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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916878
Clone id YMU001_000093_B03
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCTGAATGTGAGGCAGATGATGTTGAAATGGTGAGTAGCACATCAATTTGTGGGTCAGC
AGCAGGAGATCAGAAAGCCTGAGACAATGGCATGAGTTTTCCACATAATTCTCGAGCAAG
CCGAAGCCGAGAGTTTGTATTGTAGTTGGAAGACACCTATCATGTACTAGAAAGTTTTGT
GGTATATGACTATGCAGCCTGGCTTCTATGTCGCAATAGCACTGACCCGGTCGTCCAAGA
CCTATGATCAGAATTCAGTGGAATTGCACATTACAAGCTTAGCCCAACAAGCACAGATGG
AATTACATTGAGATCACTGTACAGCAATATCCGCGTCCGCAGCACCGCACCGAAGGCAAA
ATATTATCTACATTTGTCATCCATGACTTGCAGTATCAGAGCCCCTTCCATATTTTATGC
AGTGATATAATGCATGGTTGGAGCATCTCTTATCGAACAGCAATTCAACGACGCAATAGA
TGAGCTTTATCTTGTACATTCTACCTCAGTATAACCCCTTA
■■Homology search results ■■ -
sp_hit_id O35075
Definition sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3 homolog OS=Mus musculus
Align length 92
Score (bit) 31.6
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916878|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_B03.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3 ho...    32   2.4  
sp|Q09446|DNJ5_CAEEL DnaJ homolog dnj-5 OS=Caenorhabditis elegan...    31   4.0  
sp|Q31BS5|GLGA_PROM9 Glycogen synthase OS=Prochlorococcus marinu...    30   6.9  
sp|A8G3X5|GLGA_PROM2 Glycogen synthase OS=Prochlorococcus marinu...    30   6.9  
sp|A3PBY3|GLGA_PROM0 Glycogen synthase OS=Prochlorococcus marinu...    30   6.9  
sp|B0CA77|GPMI_ACAM1 2,3-bisphosphoglycerate-independent phospho...    30   9.0  
sp|Q7V275|GLGA_PROMP Glycogen synthase OS=Prochlorococcus marinu...    30   9.0  

>sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3
           homolog OS=Mus musculus GN=Dscr3 PE=2 SV=1
          Length = 297

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = +2

Query: 146 LEDTYHVLESFVVYDYAAWLLCRNSTDPVVQDL*SEFSGIAHY-----KLSPTSTDGITL 310
           L +TYH +  FV   Y   L C      + +DL      I H      KL+P+  D    
Sbjct: 105 LYETYHGV--FVNIQYT--LRCDMRRSLLAKDLTKTCEFIVHSAPQKGKLTPSPVDFTIT 160

Query: 311 RSLYSNIRVRSTAPKAKYYLHLSSMTCSIRAP 406
                N++ R++ PK     HL+S  C+I  P
Sbjct: 161 PETLQNVKERASLPKFFIRGHLNSTNCAITQP 192


>sp|Q09446|DNJ5_CAEEL DnaJ homolog dnj-5 OS=Caenorhabditis elegans
            GN=dnj-5 PE=2 SV=2
          Length = 915

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
 Frame = +2

Query: 8    CEADDVEMVSSTSICGSAAGDQKA*DNGMSFPHNSRASRSREFVL*LEDTYHVLESFVVY 187
            C+ ++     +TSI  S A   K    G+  P         +  L L  TY+     VVY
Sbjct: 754  CDCENTHFRVATSISPSQARSCKR--CGVKHPAKQNDIWVEKRHLGLTSTYYTCTDNVVY 811

Query: 188  DYAAWLLCRNSTDPVVQDL*SEFSGIAHYKLSPT-STDGITLRSLYSNIRVRSTAPKAKY 364
            D  +W  C+ S   +++++ +    + +  LSP         +S Y N    S++  A++
Sbjct: 812  DITSWATCK-SQRAMLKNMRAHTHNVQYRLLSPMFKNSDFDAQSQYYNSSYPSSSTDARF 870


>sp|Q31BS5|GLGA_PROM9 Glycogen synthase OS=Prochlorococcus marinus
           (strain MIT 9312) GN=glgA PE=3 SV=1
          Length = 483

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +1

Query: 259 WNCTLQA*PNKHRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFH------ILC 420
           WNC      + H W+   I V  +  P+      I + F IH+L+YQ P+         C
Sbjct: 117 WNCWKPQVLHCHDWHTGMIPVWMHQDPE------ISTVFTIHNLKYQGPWRWKLEKMTWC 170

Query: 421 SDIMHG 438
              MHG
Sbjct: 171 PWYMHG 176


>sp|A8G3X5|GLGA_PROM2 Glycogen synthase OS=Prochlorococcus marinus
           (strain MIT 9215) GN=glgA PE=3 SV=1
          Length = 485

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +1

Query: 259 WNCTLQA*PNKHRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFH------ILC 420
           WNC      + H W+   I V  +  P+      I + F IH+L+YQ P+         C
Sbjct: 117 WNCWKPQVLHCHDWHTGMIPVWMHQDPE------ISTVFTIHNLKYQGPWRWKLEKMTWC 170

Query: 421 SDIMHG 438
              MHG
Sbjct: 171 PWYMHG 176


>sp|A3PBY3|GLGA_PROM0 Glycogen synthase OS=Prochlorococcus marinus
           (strain MIT 9301) GN=glgA PE=3 SV=1
          Length = 483

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +1

Query: 259 WNCTLQA*PNKHRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFH------ILC 420
           WNC      + H W+   I V  +  P+      I + F IH+L+YQ P+         C
Sbjct: 117 WNCWKPQVLHCHDWHTGMIPVWMHQDPE------ISTVFTIHNLKYQGPWRWKLEKMTWC 170

Query: 421 SDIMHG 438
              MHG
Sbjct: 171 PWYMHG 176


>sp|B0CA77|GPMI_ACAM1 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Acaryochloris marina (strain
           MBIC 11017) GN=gpmI PE=3 SV=1
          Length = 534

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 219 ALTRSSKTYDQNSVELHITSLAQQAQMELH*DHCTAISASAAPHRRQNIIYIC 377
           AL +  K   Q S +LH+  L  +  +  H DH  A+   A  H   NI  +C
Sbjct: 99  ALDKVCKQVSQASTKLHLIGLCSKGGVHAHSDHLLALLKLAKEH---NISQVC 148


>sp|Q7V275|GLGA_PROMP Glycogen synthase OS=Prochlorococcus marinus
           subsp. pastoris (strain CCMP1378 / MED4) GN=glgA PE=3
           SV=1
          Length = 483

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +1

Query: 259 WNCTLQA*PNKHRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFH------ILC 420
           WNC      + H W+   I V  +  P+      + + F IH+L+YQ P+         C
Sbjct: 117 WNCWKPQVLHCHDWHTGMIPVWMHQDPE------VSTVFTIHNLKYQGPWRWKLEKMTWC 170

Query: 421 SDIMHG 438
              MHG
Sbjct: 171 PWYMHG 176
tr_hit_id A0SQS7
Definition tr|A0SQS7|A0SQS7_9CARY Maturase K (Fragment) OS=Schiedea aprokremnos
Align length 60
Score (bit) 35.4
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916878|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_B03.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0SQS7|A0SQS7_9CARY Maturase K (Fragment) OS=Schiedea aprokre...    35   1.7  
tr|A0SQV1|A0SQV1_9CARY Maturase K (Fragment) OS=Schiedea vertici...    35   2.9  
tr|A0SQV0|A0SQV0_9CARY Maturase K (Fragment) OS=Schiedea trinerv...    35   2.9  
tr|A0SQU9|A0SQU9_9CARY Maturase K (Fragment) OS=Schiedea stellar...    35   2.9  
tr|A0SQU8|A0SQU8_9CARY Maturase K (Fragment) OS=Schiedea spergul...    35   2.9  
tr|A0SQU6|A0SQU6_9CARY Maturase K (Fragment) OS=Schiedea salicar...    35   2.9  
tr|A0SQU5|A0SQU5_9CARY Maturase K (Fragment) OS=Schiedea perlman...    35   2.9  
tr|A0SQU4|A0SQU4_9CARY Maturase K (Fragment) OS=Schiedea pentand...    35   2.9  
tr|A0SQU3|A0SQU3_9CARY Maturase K (Fragment) OS=Schiedea obovata...    35   2.9  
tr|A0SQU2|A0SQU2_9CARY Maturase K (Fragment) OS=Schiedea nuttall...    35   2.9  
tr|A0SQU1|A0SQU1_9CARY Maturase K (Fragment) OS=Schiedea menzies...    35   2.9  
tr|A0SQU0|A0SQU0_9CARY Maturase K (Fragment) OS=Schiedea membran...    35   2.9  
tr|A0SQT9|A0SQT9_9CARY Maturase K (Fragment) OS=Schiedea mannii ...    35   2.9  
tr|A0SQT7|A0SQT7_9CARY Maturase K (Fragment) OS=Schiedea ligustr...    35   2.9  
tr|A0SQT6|A0SQT6_9CARY Maturase K (Fragment) OS=Schiedea laui GN...    35   2.9  
tr|A0SQT5|A0SQT5_9CARY Maturase K (Fragment) OS=Schiedea kealiae...    35   2.9  
tr|A0SQT4|A0SQT4_9CARY Maturase K (Fragment) OS=Schiedea kauaien...    35   2.9  
tr|A0SQT3|A0SQT3_9CARY Maturase K (Fragment) OS=Schiedea kaalae ...    35   2.9  
tr|A0SQT2|A0SQT2_9CARY Maturase K (Fragment) OS=Schiedea jacobii...    35   2.9  
tr|A0SQT1|A0SQT1_9CARY Maturase K (Fragment) OS=Schiedea hookeri...    35   2.9  
tr|A0SQT0|A0SQT0_9CARY Maturase K (Fragment) OS=Schiedea helleri...    35   2.9  
tr|A0SQS9|A0SQS9_9CARY Maturase K (Fragment) OS=Schiedea haleaka...    35   2.9  
tr|A0SQS8|A0SQS8_9CARY Maturase K (Fragment) OS=Schiedea globosa...    35   2.9  
tr|A0SQS6|A0SQS6_9CARY Maturase K (Fragment) OS=Schiedea adamant...    35   2.9  
tr|Q94BA1|Q94BA1_9CARY Maturase K (Fragment) OS=Saponaria ocymoi...    34   3.8  
tr|Q29V28|Q29V28_9CARY Maturase K (Fragment) OS=Minuartia larici...    34   5.0  
tr|Q29V09|Q29V09_9CARY Maturase K (Fragment) OS=Lychnis flos-jov...    33   6.5  
tr|A0SQV2|A0SQV2_9CARY Maturase K (Fragment) OS=Schiedea viscosa...    33   6.5  

>tr|A0SQS7|A0SQS7_9CARY Maturase K (Fragment) OS=Schiedea
           aprokremnos GN=matK PE=3 SV=1
          Length = 356

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I+ +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIISKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQV1|A0SQV1_9CARY Maturase K (Fragment) OS=Schiedea
           verticillata GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQV0|A0SQV0_9CARY Maturase K (Fragment) OS=Schiedea trinervis
           GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQU9|A0SQU9_9CARY Maturase K (Fragment) OS=Schiedea
           stellarioides GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQU8|A0SQU8_9CARY Maturase K (Fragment) OS=Schiedea spergulina
           GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQU6|A0SQU6_9CARY Maturase K (Fragment) OS=Schiedea salicaria
           GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQU5|A0SQU5_9CARY Maturase K (Fragment) OS=Schiedea perlmannii
           GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQU4|A0SQU4_9CARY Maturase K (Fragment) OS=Schiedea pentandra
           GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQU3|A0SQU3_9CARY Maturase K (Fragment) OS=Schiedea obovata
           GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98


>tr|A0SQU2|A0SQU2_9CARY Maturase K (Fragment) OS=Schiedea nuttallii
           GN=matK PE=3 SV=1
          Length = 359

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 292 HRWNYIEITVQQYPRPQHRTEGKILSTFVIHDLQYQSPFHILCSDIMHGWSISYRTAIQR 471
           H WN + I  +     + R +   L  +  H  +Y+S F  LC    H  S SYR  ++R
Sbjct: 39  HNWNTLIIPKKDISSFRKRNQRFFLFLYNFHVCEYESIFVFLCKQSFHLRSTSYRVLLER 98