BP916753
Clone id YMU001_000091_B12
Library
Length 393
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GACCCTATATAATTTTCCGTATAGAATCTGTACAAGTGAACCACCAGCTGCCCACTTTGC
AACAAGGTTACACATTTCAACTACATGGCATGTAGGCTCCTTAACTTCCCTTCGATATAA
TTTGAGATAGAGATTGACTTGAATGCTAGGCTTGAACCACCGGCACTAACAGCCTCCATC
ATTGAATCATTGTACAATGCATGTGGCAAACAGAATGCCTTCTCTGACCTCTTGCCAATA
ACAAAGAACACTAAGACAGCAACAAGTAAGATACACGACTTTGTAGTCTCATCAAGGTTG
TCTACCACACTCCTTTCACTAATATGTGTTCCCAATAAGGACACTACAGCATCTATGGCT
TCTACAAGCTTCTCTTTAAGTAGCATGTATACC
■■Homology search results ■■ -
sp_hit_id P03304
Definition sp|P03304|POLG_EMCV Genome polyprotein OS=Encephalomyocarditis virus
Align length 55
Score (bit) 30.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916753|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_B12.
(393 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P03304|POLG_EMCV Genome polyprotein OS=Encephalomyocarditis v... 30 3.7
sp|P25302|SWI4_YEAST Regulatory protein SWI4 OS=Saccharomyces ce... 29 8.3

>sp|P03304|POLG_EMCV Genome polyprotein OS=Encephalomyocarditis
virus PE=3 SV=1
Length = 2290

Score = 30.0 bits (66), Expect = 3.7
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1

Query: 103 NFPSI*FEIEIDLNARL---EPPALTASIIESLYNACGKQNAFSDLLPITKNTKT 258
NF S ++ IDL+A +PP L SI ESL G NAFS++LP+ + T
Sbjct: 90 NFYSNQYQNSIDLSANAAGSDPPRLR-SIFESL---SGAVNAFSNMLPLLADQNT 140


>sp|P25302|SWI4_YEAST Regulatory protein SWI4 OS=Saccharomyces
cerevisiae GN=SWI4 PE=1 SV=2
Length = 1093

Score = 28.9 bits (63), Expect = 8.3
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1

Query: 82 YMACRLLNFPSI*FEIEIDLNA----RLEPPALTASIIESLYNACGKQNAFSDLLPITK 246
+ A + N P I I ++ NA +L +T SI YN C K+NAF +++ I K
Sbjct: 526 HWATAMANIPLIKMLITLNANALQCNKLGFNCITKSIF---YNNCYKENAFDEIISILK 581


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916753|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_B12.
(393 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******