BP916716
Clone id YMU001_000090_G02
Library
Length 586
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCAAAAATAAGCATCTCTCATCATAGAGGGCCAACATTAACCTACTCTCAAAACATGAAA
GACAACCTGATCCTTGTCTTGATGGCCTGTTTCTTCATGGCAGTGCTCCAAAATCAAGAC
TATCTCTTCTTTGTACGGCACTTTTCTCAAAATGCTATCCTTGCCATAAAGCATGAGATC
CTCACCTAACTACCAATGTGTAATTTCTTCCTTTTGCAACTATTCTCTGACGCCGAACTT
TTGACATGCCTTCTGGACATTGCCCTTTACTCAGAAATACTTCCACATCTTGCAATGATT
CCCTTCCTGCATACAAGGCTTCCTTGACCTTTAAAGCAGCTACCAAGGCATCCAACTTGT
TCCTAGCCAACTCATCATTTTCTTTATTCTGCTCACGAGGAACATGCTTAAACTGTATCT
TCTGGAACTCATGCAAAAGCTTCTTGATGCCATAGAACCACTTCTTCAAATTGTCTTTCT
TAACATTCCACAAACCAAGCAACTGATTCATGACTAGCAATGCATCCCCCTCTTCAATCC
AAACTCAACACACTACTTCAACCCAAGGAAAAGCGTGAGGTACTCG
■■Homology search results ■■ -
sp_hit_id P64956
Definition sp|P64956|Y2253_MYCBO Uncharacterized protein Mb2253c OS=Mycobacterium bovis
Align length 56
Score (bit) 42.0
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916716|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_G02.
(586 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P64956|Y2253_MYCBO Uncharacterized protein Mb2253c OS=Mycobac... 42 0.002
sp|P64955|Y2228_MYCTU Uncharacterized protein Rv2228c/MT2287 OS=... 42 0.002
sp|P54164|YPEP_BACSU Uncharacterized protein ypeP OS=Bacillus su... 35 0.28
sp|Q02785|PDR12_YEAST ATP-dependent permease PDR12 OS=Saccharomy... 32 1.8
sp|Q12TF2|DP2L_METBU DNA polymerase II large subunit OS=Methanoc... 32 3.1
sp|Q60584|FBXW2_MOUSE F-box/WD repeat-containing protein 2 OS=Mu... 30 8.9
sp|Q9UKT8|FBXW2_HUMAN F-box/WD repeat-containing protein 2 OS=Ho... 30 8.9
sp|Q58D00|FBXW2_BOVIN F-box/WD repeat-containing protein 2 OS=Bo... 30 8.9
sp|Q8WWZ7|ABCA5_HUMAN ATP-binding cassette sub-family A member 5... 30 8.9

>sp|P64956|Y2253_MYCBO Uncharacterized protein Mb2253c
OS=Mycobacterium bovis GN=Mb2253c PE=4 SV=1
Length = 364

Score = 42.0 bits (97), Expect = 0.002
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -1

Query: 526 DALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELARN 359
D+ LV+ Q+ G W VK +L K + + L +F++I ++ VPR +N D LA +
Sbjct: 73 DSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLAND 128


>sp|P64955|Y2228_MYCTU Uncharacterized protein Rv2228c/MT2287
OS=Mycobacterium tuberculosis GN=Rv2228c PE=4 SV=1
Length = 364

Score = 42.0 bits (97), Expect = 0.002
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -1

Query: 526 DALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELARN 359
D+ LV+ Q+ G W VK +L K + + L +F++I ++ VPR +N D LA +
Sbjct: 73 DSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLAND 128


>sp|P54164|YPEP_BACSU Uncharacterized protein ypeP OS=Bacillus
subtilis GN=ypeP PE=4 SV=1
Length = 120

Score = 35.0 bits (79), Expect = 0.28
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKI-QFKHVPREQNKENDELAR 362
GD+L+V+NQL G W + +W I+ LL + ++ + R+ N+E D LA+
Sbjct: 41 GDSLVVLNQLDGSWPCYDPSHNEWLDKIEALLESLKLTPTYETIQRKDNQEADGLAK 97


>sp|Q02785|PDR12_YEAST ATP-dependent permease PDR12 OS=Saccharomyces
cerevisiae GN=PDR12 PE=1 SV=1
Length = 1511

Score = 32.3 bits (72), Expect = 1.8
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1

Query: 493 LWNVKKD-NLKKWFYGIKKLLHEFQKIQFKHVPREQNK 383
+W++K N KKWF G +K HE F+ VP ++NK
Sbjct: 1470 VWSLKSVLNFKKWFNGPRKERHEKDTNIFQTVPGDENK 1507


>sp|Q12TF2|DP2L_METBU DNA polymerase II large subunit
OS=Methanococcoides burtonii (strain DSM 6242) GN=polC
PE=3 SV=2
Length = 1145

Score = 31.6 bits (70), Expect = 3.1
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Frame = -2

Query: 216 QKEEITHW*LGEDLMLYGKDSILRKVPYKEEIVLILEHC-----------HEETGHQDKD 70
+KEE+ + E++MLY + + L+ P +EEI LI+E+C E GH++ +
Sbjct: 178 RKEEVERYI--EEIMLYKRVASLQYTPSEEEIRLIVENCPICIDGEPTEAEEVEGHRNLE 235

Query: 69 QVVFHVLRVG 40
++ + +R G
Sbjct: 236 RIDTNRVRGG 245


>sp|Q60584|FBXW2_MOUSE F-box/WD repeat-containing protein 2 OS=Mus
musculus GN=Fbxw2 PE=2 SV=1
Length = 422

Score = 30.0 bits (66), Expect = 8.9
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +1

Query: 61 DNLILVLMACFFMAVLQNQDYLFFV------RHFSQNAILAIKHEILT*LPM-CNFFLLQ 219
DN+ + ++ + + D+L + RH S N +K + L LP+ +F+LL+
Sbjct: 11 DNISVTFLSLMDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLK 70

Query: 220 LFSDAELLTCLL 255
LLTC L
Sbjct: 71 WLDPQTLLTCCL 82


>sp|Q9UKT8|FBXW2_HUMAN F-box/WD repeat-containing protein 2 OS=Homo
sapiens GN=FBXW2 PE=1 SV=2
Length = 454

Score = 30.0 bits (66), Expect = 8.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1

Query: 133 VRHFSQNAILAIKHEILT*LPM-CNFFLLQLFSDAELLTCLLDIALYSEIL 282
+RH S N +K + L LP+ +F+LL+ LLTC L +++++
Sbjct: 41 LRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVI 91


>sp|Q58D00|FBXW2_BOVIN F-box/WD repeat-containing protein 2 OS=Bos
taurus GN=FBXW2 PE=2 SV=1
Length = 454

Score = 30.0 bits (66), Expect = 8.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1

Query: 133 VRHFSQNAILAIKHEILT*LPM-CNFFLLQLFSDAELLTCLLDIALYSEIL 282
+RH S N +K + L LP+ +F+LL+ LLTC L +++++
Sbjct: 41 LRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVI 91


>sp|Q8WWZ7|ABCA5_HUMAN ATP-binding cassette sub-family A member 5
OS=Homo sapiens GN=ABCA5 PE=2 SV=2
Length = 1642

Score = 30.0 bits (66), Expect = 8.9
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Frame = +1

Query: 70 ILVLMACFFMAVLQNQDYLFFVRHFSQNAILAIK--------------HEILT*LPMCNF 207
+L+L+ FF Q ++F V H +NA++ IK H+ T L + N
Sbjct: 865 VLLLLLIFFTV----QIFMFLVHHSFKNAVVPIKLVPDLYFLKPGDKPHKYKTSLLLQNS 920

Query: 208 F------LLQLFSDAELLTCLLDIALYSEILPHLAMIPFLHT 315
L+ F+ ++ +++ + Y + PH A + +H+
Sbjct: 921 ADSDISDLISFFTSQNIMVTMINDSDYVSVAPHSAALNVMHS 962


tr_hit_id Q0J3F9
Definition tr|Q0J3F9|Q0J3F9_ORYSJ Os09g0119300 protein OS=Oryza sativa subsp. japonica
Align length 56
Score (bit) 48.9
E-value 3.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916716|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_G02.
(586 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0J3F9|Q0J3F9_ORYSJ Os09g0119300 protein OS=Oryza sativa subs... 49 3e-06
tr|Q22C81|Q22C81_TETTH RNase H family protein OS=Tetrahymena the... 54 6e-06
tr|Q7XNI8|Q7XNI8_ORYSJ OSJNBb0032D24.5 protein OS=Oryza sativa s... 45 4e-05
tr|Q7XSL0|Q7XSL0_ORYSJ OSJNBa0059D20.1 protein (OSJNBb0013J13.19... 50 9e-05
tr|Q2QWF9|Q2QWF9_ORYSJ Retrotransposon protein, putative, unclas... 50 9e-05
tr|Q0DBR6|Q0DBR6_ORYSJ Os06g0536800 protein OS=Oryza sativa subs... 50 9e-05
tr|A5AFC7|A5AFC7_VITVI Putative uncharacterized protein OS=Vitis... 50 9e-05
tr|Q94I24|Q94I24_ORYSA Putative retroelement OS=Oryza sativa GN=... 50 1e-04
tr|Q6UUK4|Q6UUK4_ORYSJ Putative reverse transcriptase OS=Oryza s... 50 1e-04
tr|Q33A41|Q33A41_ORYSJ Retrotransposon protein, putative, unclas... 50 1e-04
tr|A5AHS1|A5AHS1_VITVI Putative uncharacterized protein OS=Vitis... 50 1e-04
tr|Q7XW55|Q7XW55_ORYSJ OSJNBb0096E05.7 protein OS=Oryza sativa s... 49 2e-04
tr|Q0JLZ7|Q0JLZ7_ORYSJ Os01g0554100 protein (Fragment) OS=Oryza ... 49 2e-04
tr|Q94I69|Q94I69_ORYSJ Putative retroelement OS=Oryza sativa sub... 49 3e-04
tr|Q53RL5|Q53RL5_ORYSJ RNase H, putative (Retrotransposon protei... 49 3e-04
tr|Q01MY6|Q01MY6_ORYSA OSIGBa0160I04.5 protein OS=Oryza sativa G... 49 3e-04
tr|A5CB98|A5CB98_VITVI Putative uncharacterized protein OS=Vitis... 49 3e-04
tr|A5C8C3|A5C8C3_VITVI Putative uncharacterized protein OS=Vitis... 49 3e-04
tr|A5ACX9|A5ACX9_VITVI Putative uncharacterized protein OS=Vitis... 49 3e-04
tr|Q7X7F1|Q7X7F1_ORYSA OSJNBb0068N06.2 protein (OSJNBa0029L02.24... 48 4e-04
tr|Q53Q00|Q53Q00_ORYSJ Retrotransposon protein, putative, unclas... 48 4e-04
tr|Q2R0G5|Q2R0G5_ORYSJ Retrotransposon protein, putative, unclas... 48 4e-04
tr|Q2QT03|Q2QT03_ORYSJ Retrotransposon protein, putative, unclas... 48 4e-04
tr|A5AH94|A5AH94_VITVI Putative uncharacterized protein OS=Vitis... 48 4e-04
tr|Q94LN5|Q94LN5_ORYSJ Putative retroelement pol polyprotein (Re... 48 5e-04
tr|Q5R1K6|Q5R1K6_ORYSJ Retrotransposon protein, putative, unclas... 48 5e-04
tr|Q10I05|Q10I05_ORYSJ Retrotransposon protein, putative, unclas... 48 5e-04
tr|A5B248|A5B248_VITVI Putative uncharacterized protein OS=Vitis... 48 5e-04
tr|A5B1R6|A5B1R6_VITVI Putative uncharacterized protein OS=Vitis... 48 5e-04
tr|Q75HC9|Q75HC9_ORYSJ Retrotransposon protein, putative, unclas... 47 6e-04

>tr|Q0J3F9|Q0J3F9_ORYSJ Os09g0119300 protein OS=Oryza sativa subsp.
japonica GN=Os09g0119300 PE=4 SV=1
Length = 2312

Score = 48.9 bits (115), Expect(2) = 3e-06
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELAR 362
GD+LLV++QL G + K D L + +L+ EFQ + KHV REQN E ++LA+
Sbjct: 1860 GDSLLVISQLAGEYECKNDTLMVYNEKCLELMKEFQLVTLKHVSREQNLEANDLAQ 1915



Score = 25.4 bits (54), Expect(2) = 3e-06
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -2

Query: 255 QKACQKFGVRE*LQKEEITHW*LGEDLMLYGKDSILRKVPYKEEIVLILEHCHEET--GH 82
Q AC+K L+ + + + L ++L + +L K ++ + HE H
Sbjct: 1952 QSACRK------LRYKALKYTLLDDELYYRMINGVLLKCLSADQAKFAIGEVHEGICGTH 2005

Query: 81 QDKDQVVFHVLRVG*CWPSMMRDAY 7
Q ++ + + R G WP+M+ D +
Sbjct: 2006 QSAHKMKWLLRRAGYFWPTMLEDCF 2030


>tr|Q22C81|Q22C81_TETTH RNase H family protein OS=Tetrahymena
thermophila SB210 GN=TTHERM_01075590 PE=4 SV=1
Length = 693

Score = 53.9 bits (128), Expect = 6e-06
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELA 365
GD+ L++ Q+ G +N DN+KK++ K L +FQ+ F HV REQNKE D L+
Sbjct: 629 GDSQLIIYQMTGKYNCSNDNIKKYYELCKMLQSKFQQTSFNHVYREQNKEADHLS 683


>tr|Q7XNI8|Q7XNI8_ORYSJ OSJNBb0032D24.5 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0032D24.5 PE=4 SV=1
Length = 1355

Score = 45.4 bits (106), Expect(2) = 4e-05
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELAR 362
GD+LLV++QL G + K D L + ++L+ F+ + KHV REQN E ++LA+
Sbjct: 1010 GDSLLVISQLAGEYECKNDTLIVYNEKCRELMKGFRLVTLKHVSREQNVEANDLAQ 1065



Score = 25.0 bits (53), Expect(2) = 4e-05
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -2

Query: 255 QKACQKFGVRE*LQKEEITHW*LGEDLMLYGKDSILRKVPYKEEIVLILEHCHEET--GH 82
Q A QK L+ + + + L ++L D +L K + + + HEE H
Sbjct: 1102 QSASQK------LRYKALKYTLLDDELYYRTIDGVLLKCLSADRAKVPIGKVHEEICGTH 1155

Query: 81 QDKDQVVFHVLRVG*CWPSMMRDAY 7
Q ++ + + RVG WP ++ D +
Sbjct: 1156 QSARKMKWLLRRVGYFWPIVLEDCF 1180


>tr|Q7XSL0|Q7XSL0_ORYSJ OSJNBa0059D20.1 protein (OSJNBb0013J13.19
protein) OS=Oryza sativa subsp. japonica
GN=OSJNBa0059D20.1 PE=4 SV=2
Length = 1557

Score = 50.1 bits (118), Expect = 9e-05
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELAR 362
GD+LLV+NQL G + K D L + ++L+ EF+ + KHV REQN E ++LA+
Sbjct: 1155 GDSLLVINQLAGEYECKNDTLMVYNEKCQELMKEFRLVTLKHVSREQNIEANDLAQ 1210


>tr|Q2QWF9|Q2QWF9_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os12g09480 PE=4 SV=1
Length = 1645

Score = 50.1 bits (118), Expect = 9e-05
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELAR 362
GD+LLV++QL G + K D L + +KL++EF+ + KH+ REQN E ++LA+
Sbjct: 1227 GDSLLVISQLAGEYKCKDDTLIIYHRKCQKLMNEFRLVTLKHISREQNMEANDLAQ 1282


>tr|Q0DBR6|Q0DBR6_ORYSJ Os06g0536800 protein OS=Oryza sativa subsp.
japonica GN=Os06g0536800 PE=4 SV=1
Length = 1335

Score = 50.1 bits (118), Expect = 9e-05
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELAR 362
GD+LLV++QL G ++ K D L + ++L+ F+ + KHVPREQN E +LAR
Sbjct: 1157 GDSLLVISQLAGEYDCKNDVLMVYNEKCRELMDSFRLVTLKHVPREQNVEAKDLAR 1212


>tr|A5AFC7|A5AFC7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_000409 PE=4 SV=1
Length = 1717

Score = 50.1 bits (118), Expect = 9e-05
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -2

Query: 177 LMLYGKDSILRKVPYKEEIVLILEHCHEET--GHQDKDQVVFHVLRVG*CWPSMMRDAY 7
L Y D I+RK ++E IL HCHE T GH + VL+ G CWPS+ +DA+
Sbjct: 1070 LFKYYADQIIRKCILEQEQQRILSHCHESTCGGHFASQKTTMKVLQSGFCWPSLFKDAH 1128


>tr|Q94I24|Q94I24_ORYSA Putative retroelement OS=Oryza sativa
GN=OSJNBa0034E23.1 PE=4 SV=1
Length = 1175

Score = 49.7 bits (117), Expect = 1e-04
Identities = 24/56 (42%), Positives = 39/56 (69%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELAR 362
GD+LLV++QL+G + KKD L + ++L+ EF+ + +HV REQN E ++LA+
Sbjct: 1084 GDSLLVISQLVGEYECKKDTLVVYNEKCRELMKEFRLVTLRHVSREQNIEANDLAQ 1139


>tr|Q6UUK4|Q6UUK4_ORYSJ Putative reverse transcriptase OS=Oryza sativa
subsp. japonica GN=OSJNBa0017M13.18 PE=4 SV=1
Length = 1351

Score = 49.7 bits (117), Expect = 1e-04
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELAR 362
GD+LLV++QL+G + K D L + ++L+ EF+ + KHV REQN E ++LA+
Sbjct: 1007 GDSLLVVSQLVGEYECKNDTLMVYNEKCQELMKEFRLVTLKHVSREQNVEANDLAK 1062


>tr|Q33A41|Q33A41_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os10g16390 PE=4 SV=1
Length = 949

Score = 49.7 bits (117), Expect = 1e-04
Identities = 24/56 (42%), Positives = 39/56 (69%)
Frame = -1

Query: 529 GDALLVMNQLLGLWNVKKDNLKKWFYGIKKLLHEFQKIQFKHVPREQNKENDELAR 362
GD+LLV++QL+G + KKD L + ++L+ EF+ + +HV REQN E ++LA+
Sbjct: 858 GDSLLVISQLVGEYECKKDTLVVYNEKCRELMKEFRLVTLRHVSREQNIEANDLAQ 913