BP916703
Clone id YMU001_000090_F01
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTAAGACACAAAAACTACATTAAAACCAACTACTGTACTTGGAAGGAGTCAAAACACAAA
TACTGGTCTTGGTCCGCAGTCTTGACCGTGTCATACAAATATTCTGTAAACCATCCATAC
TACCGCATCCGCTAGATCCACAGTCGACGACGACGAGAAAAGGAATGTTCATTGGTATAA
CTGAACCAAGACTTCAAGTCCAAATGTTTCCAAGGGCAAAATTACATGGCATCTATTCCT
GTGAAAGAGTTCACCATGAAGTTGTTCAATTAGACATGAGATCACCATAGTTCCGCATGA
GAATGATTCCTCCCCCAAACATTGCAAGAGCCTTCAGCAGCCTCATGTTGGCGGCAAATT
TTTCGTCGTTTCCAAACTCGGTCGCTACTAGTTGCTTCAACTTCTGCACCATGCTGGGTT
GCGCCATAGCCACAACACAGACCTTTAG
■■Homology search results ■■ -
sp_hit_id Q9SD80
Definition sp|Q9SD80|TOM5_ARATH Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana
Align length 45
Score (bit) 57.0
E-value 4.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916703|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_F01.
(448 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9SD80|TOM5_ARATH Mitochondrial import receptor subunit TOM5 ... 57 4e-08
sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 1... 31 2.8
sp|P06300|PDYN_RAT Beta-neoendorphin-dynorphin OS=Rattus norvegi... 30 3.5
sp|P18146|EGR1_HUMAN Early growth response protein 1 OS=Homo sap... 30 4.6

>sp|Q9SD80|TOM5_ARATH Mitochondrial import receptor subunit TOM5
homolog OS=Arabidopsis thaliana GN=TOM5 PE=1 SV=3
Length = 54

Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/45 (53%), Positives = 37/45 (82%)
Frame = -1

Query: 409 VQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLM 275
++K+K L +E +++K+A NM+LL+AL MF GG++LMR+YGDLM
Sbjct: 8 IEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLM 52


>sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13
OS=Homo sapiens GN=ABCA13 PE=2 SV=2
Length = 5058

Score = 30.8 bits (68), Expect = 2.8
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Frame = -2

Query: 273 LIEQLHGELFHRNRCHVILPLETFGLEVLVQLYQ*TFLFSSSSTVDLADAVVWMV----- 109
++ + G H N V L L FG+ V++ Y + FS ++T L ++V+M+
Sbjct: 3634 IVLKTSGIFAHSNTFIVFLFLLDFGMSVVMLSYLLSAFFSQANTAALCTSLVYMISFLPY 3693

Query: 108 YRIFV*HGQDCGPRPVFVF*LLPSTVVGFNVVFVS 4
+ V H Q F+ LL +T G V F++
Sbjct: 3694 IVLLVLHNQLSFVNQTFLC-LLSTTAFGQGVFFIT 3727


>sp|P06300|PDYN_RAT Beta-neoendorphin-dynorphin OS=Rattus norvegicus
GN=Pdyn PE=1 SV=2
Length = 248

Score = 30.4 bits (67), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3

Query: 330 AFSSLMLAANFSSFPNSVATSCFNFCTMLGCAIAT 434
A+S LMLAA P+ VA C + C++ CA+ T
Sbjct: 2 AWSRLMLAACLLVIPSEVAADCLSLCSL--CAVRT 34


>sp|P18146|EGR1_HUMAN Early growth response protein 1 OS=Homo
sapiens GN=EGR1 PE=2 SV=1
Length = 543

Score = 30.0 bits (66), Expect = 4.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3

Query: 309 PPPNIARAFSSLMLA--ANFSSFPNSVATSCFNFCTMLGCAIAT 434
P P++A +SS+ A A SSFP+S T+ F+ T L AT
Sbjct: 491 PSPSVATTYSSVPPAFPAQVSSFPSSAVTNSFSASTGLSDMTAT 534


tr_hit_id Q6IDR6
Definition tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana
Align length 45
Score (bit) 57.0
E-value 5.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916703|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_F01.
(448 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana PE=4 SV=1 57 5e-07
tr|B6SPH3|B6SPH3_MAIZE Putative uncharacterized protein OS=Zea m... 54 4e-06
tr|A9NJT9|A9NJT9_PICSI Putative uncharacterized protein OS=Picea... 54 4e-06
tr|A8HV84|A8HV84_CHLRE Translocase of mitochondrial membrane OS=... 47 5e-04
tr|A7QI05|A7QI05_VITVI Chromosome chr17 scaffold_101, whole geno... 43 0.009
tr|Q2QN85|Q2QN85_ORYSJ cDNA clone:001-021-F10, full insert seque... 42 0.012
tr|A2ZLY7|A2ZLY7_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.012
tr|Q60HI1|Q60HI1_EPTBU Novel ITAM-containing IgSF receptor OS=Ep... 40 0.075
tr|A9TRT7|A9TRT7_PHYPA Predicted protein (Fragment) OS=Physcomit... 35 1.4
tr|B6TQS4|B6TQS4_MAIZE Putative uncharacterized protein OS=Zea m... 35 2.5
tr|Q4Q1S4|Q4Q1S4_LEIMA Putative uncharacterized protein OS=Leish... 34 4.1
tr|A4IDC1|A4IDC1_LEIIN Putative uncharacterized protein OS=Leish... 34 4.1
tr|A4HP12|A4HP12_LEIBR Putative uncharacterized protein OS=Leish... 34 4.1
tr|A8NLJ2|A8NLJ2_COPC7 Predicted protein OS=Coprinopsis cinerea ... 33 7.2

>tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana PE=4 SV=1
Length = 54

Score = 57.0 bits (136), Expect = 5e-07
Identities = 24/45 (53%), Positives = 37/45 (82%)
Frame = -1

Query: 409 VQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLM 275
++K+K L +E +++K+A NM+LL+AL MF GG++LMR+YGDLM
Sbjct: 8 IEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLM 52


>tr|B6SPH3|B6SPH3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 53

Score = 53.9 bits (128), Expect = 4e-06
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = -1

Query: 427 MAQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 272
MA S V+KLK L ++ ++E++A N +LLKA +F G I LMRN+GDLM+
Sbjct: 1 MAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMA 52


>tr|A9NJT9|A9NJT9_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 54

Score = 53.9 bits (128), Expect = 4e-06
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = -1

Query: 412 MVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 272
+++KLKQ + ++EK+AANMRLL+A +F G I LMRN+G+LM+
Sbjct: 7 VIEKLKQTWNAQVQDEEKWAANMRLLRAAGLFAGSIFLMRNFGELMA 53


>tr|A8HV84|A8HV84_CHLRE Translocase of mitochondrial membrane
OS=Chlamydomonas reinhardtii GN=TOM5 PE=4 SV=1
Length = 54

Score = 47.0 bits (110), Expect = 5e-04
Identities = 18/51 (35%), Positives = 34/51 (66%)
Frame = -1

Query: 427 MAQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLM 275
MA ++ ++ + E+ N+ KF AN+RLL+ +A+FGG + + RN+G+ +
Sbjct: 1 MASNDLLTSAQKWLREEYTNEAKFGANLRLLRGIAIFGGAVFVFRNFGEAL 51


>tr|A7QI05|A7QI05_VITVI Chromosome chr17 scaffold_101, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00000043001
PE=4 SV=1
Length = 54

Score = 42.7 bits (99), Expect = 0.009
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = -1

Query: 409 VQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 272
+ +K + ++EK+A NM+LL+A +F G I LMRN+G+ M+
Sbjct: 8 LDNIKAFWNAQIHDEEKWALNMKLLRAAGLFAGSIFLMRNFGEYMA 53


>tr|Q2QN85|Q2QN85_ORYSJ cDNA clone:001-021-F10, full insert sequence
OS=Oryza sativa subsp. japonica GN=LOC_Os12g38650 PE=4
SV=1
Length = 54

Score = 42.4 bits (98), Expect = 0.012
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = -1

Query: 424 AQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 272
A + V+K+K L ++ ++E +A N +L+KA +F I +MRN+GDLM+
Sbjct: 3 AAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMA 53


>tr|A2ZLY7|A2ZLY7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_38840 PE=4 SV=1
Length = 54

Score = 42.4 bits (98), Expect = 0.012
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = -1

Query: 424 AQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 272
A + V+K+K L ++ ++E +A N +L+KA +F I +MRN+GDLM+
Sbjct: 3 AAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMA 53


>tr|Q60HI1|Q60HI1_EPTBU Novel ITAM-containing IgSF receptor
OS=Eptatretus burgeri GN=NICIR PE=2 SV=1
Length = 347

Score = 39.7 bits (91), Expect = 0.075
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Frame = +3

Query: 45 GVKTQILVLVRSLDRVIQIFCKPSILPHP----LDPQSTTTRKGMFIGITEPRLQVQMFP 212
GV+ +++ L +S++ I++ CK + P P LDP ST + M TE +LQ+++ P
Sbjct: 167 GVQPKLIFLKQSINGTIELTCKATGFPLPNLDLLDPNSTKLKGMMKNNSTEVQLQIKL-P 225

Query: 213 RAKLHGIYSC--ERVHHE 260
+ G Y+C +H E
Sbjct: 226 ELAIDGKYTCLGRNIHGE 243


>tr|A9TRT7|A9TRT7_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_96308 PE=4 SV=1
Length = 169

Score = 35.4 bits (80), Expect = 1.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3

Query: 156 RKGMFIGITEPRLQVQMFPRAKLHGIYSCER 248
+ GMF + EPR++ P K+HG SCER
Sbjct: 80 KNGMFAQLLEPRVETNRDPENKIHGTMSCER 110


>tr|B6TQS4|B6TQS4_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 58

Score = 34.7 bits (78), Expect = 2.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -1

Query: 403 KLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 272
KL + ++ ++ +A N +L KAL +F G I+ MR GD+++
Sbjct: 14 KLTVFLYSQLYDERNWAKNKKLAKALGVFAGSILFMRTCGDMVA 57