BP916668 |
Clone id |
YMU001_000090_B12 |
Library |
YMU01 |
Length |
565 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000090_B12. |
Accession |
BP916668 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTCGTCCCCCATCCAAACTGATGCATAGACTGGATCTTCACACAAGCAAGCAGCAAGTCC ACCTCAGTCTCTACACACAAGCAATCAGTTGCAGCACCACAAACAGTAAAATGTATCAAA GCATACTTAAGAATAGGGGTGAACATAACATGCAGCCACATCATCCATGCACTCACATCA CGCAGGGCCTCTGAAGATGTCTCCCAAGCCAACCCACGCACAAACAGCTTCCGATGGGCA GGATCCTTGCTTGCAACTTCCCTAATATCATCTGCAATCGCAGGGTATTGAAAACCTCTG CACGGTACCAACATCAAGCATGACCAGTCAAAGGCACATACTCTATTCAAAACCTCCCAT GCAAGCAGTAACAAAATCAAACACTGGCACCCCCTTCCCAAAACAATATCAATGTTTGCT TATCCTGACGATGACACTGTCTCCAAGCTTTACAAAGGGTTGGGAGCTAAACAACTGAAA ATCCTCAGGTAAAAATCGGTTAACTACCAAGATAAAACAACAAAAGTACAGATGTCGAAG AACCTTATAAATACGGCTAAGAACG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q08473 |
Definition |
sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster |
Align length |
19 |
Score (bit) |
31.6 |
E-value |
2.8 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S9U5 |
Definition |
tr|A9S9U5|A9S9U5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
40 |
Score (bit) |
69.3 |
E-value |
1.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916668|Adiantum capillus-veneris mRNA, clone: YMU001_000090_B12. (565 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S9U5|A9S9U5_PHYPA Predicted protein (Fragment) OS=Physcomit... 69 1e-10 tr|A9NUP9|A9NUP9_PICSI Putative uncharacterized protein OS=Picea... 68 3e-10 tr|A7PVU6|A7PVU6_VITVI Chromosome chr8 scaffold_34, whole genome... 61 4e-08 tr|A5BGN9|A5BGN9_VITVI Putative uncharacterized protein OS=Vitis... 61 4e-08 tr|A9NVQ7|A9NVQ7_PICSI Putative uncharacterized protein OS=Picea... 57 7e-07 tr|Q2V9B8|Q2V9B8_SOLTU RNA-binding protein AKIP1-like OS=Solanum... 52 3e-05 tr|A7PG82|A7PG82_VITVI Chromosome chr6 scaffold_15, whole genome... 51 5e-05 tr|A5B1I9|A5B1I9_VITVI Putative uncharacterized protein OS=Vitis... 51 5e-05 tr|A9SEJ6|A9SEJ6_PHYPA Predicted protein (Fragment) OS=Physcomit... 49 2e-04 tr|A9TVT0|A9TVT0_PHYPA Predicted protein (Fragment) OS=Physcomit... 47 5e-04 tr|Q9LES2|Q9LES2_ARATH Putative uncharacterized protein T8M16_19... 47 7e-04 tr|Q94B29|Q94B29_ARATH Putative uncharacterized protein T8M16_19... 47 7e-04 tr|Q5ZDX8|Q5ZDX8_ORYSJ Heterogeneous nuclear ribonucleoprotein A... 47 0.001 tr|B6TV58|B6TV58_MAIZE Heterogeneous nuclear ribonucleoprotein A... 47 0.001 tr|A7Q9Y0|A7Q9Y0_VITVI Chromosome chr8 scaffold_68, whole genome... 45 0.002 tr|A5BZL6|A5BZL6_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002 tr|B8LRC5|B8LRC5_PICSI Putative uncharacterized protein OS=Picea... 43 0.010 tr|A9NL61|A9NL61_PICSI Putative uncharacterized protein OS=Picea... 43 0.010 tr|A5ADJ5|A5ADJ5_VITVI Putative uncharacterized protein (Chromos... 43 0.010 tr|Q8LLE6|Q8LLE6_VICFA RNA-binding protein AKIP1 OS=Vicia faba P... 42 0.018 tr|Q2PEU9|Q2PEU9_TRIPR Putative uncharacterized protein (Fragmen... 42 0.018 tr|Q2PET5|Q2PET5_TRIPR Putative uncharacterized protein (Fragmen... 42 0.018 tr|Q2HUH7|Q2HUH7_MEDTR RNA-binding region RNP-1 (RNA recognition... 42 0.018 tr|A7PL41|A7PL41_VITVI Chromosome chr7 scaffold_20, whole genome... 41 0.051 tr|A5BLC5|A5BLC5_VITVI Putative uncharacterized protein OS=Vitis... 41 0.051 tr|O80678|O80678_ARATH Putative RNA-binding protein (At2g41060/T... 40 0.067 tr|B6TJJ4|B6TJJ4_MAIZE RNA binding protein OS=Zea mays PE=2 SV=1 40 0.088 tr|B4FQC3|B4FQC3_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.088 tr|B4FLV1|B4FLV1_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.088 tr|B6SXV2|B6SXV2_MAIZE RNA-binding protein AKIP1 OS=Zea mays PE=... 39 0.19
>tr|A9S9U5|A9S9U5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_44443 PE=4 SV=1 Length = 210
Score = 69.3 bits (168), Expect = 1e-10 Identities = 31/40 (77%), Positives = 36/40 (90%) Frame = -3
Query: 296 GFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRD 177 G +PA+ADDIR++ASKDP HRKLFVRGLAWETSS ALR+ Sbjct: 32 GSLFPAVADDIRDIASKDPVHRKLFVRGLAWETSSMALRE 71
>tr|A9NUP9|A9NUP9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 365
Score = 68.2 bits (165), Expect = 3e-10 Identities = 31/40 (77%), Positives = 36/40 (90%) Frame = -3
Query: 296 GFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRD 177 G YPAIA++I++VASKDPAHRKLFVRGLAWETSS+ L D Sbjct: 48 GSSYPAIAEEIKDVASKDPAHRKLFVRGLAWETSSQTLCD 87
>tr|A7PVU6|A7PVU6_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025362001 PE=4 SV=1 Length = 907
Score = 61.2 bits (147), Expect = 4e-08 Identities = 27/38 (71%), Positives = 32/38 (84%) Frame = -3
Query: 296 GFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEAL 183 G QYP+IA++I+ VAS DP HRKLFVRGLAW T+SE L Sbjct: 44 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETL 81
>tr|A5BGN9|A5BGN9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031367 PE=4 SV=1 Length = 294
Score = 61.2 bits (147), Expect = 4e-08 Identities = 27/38 (71%), Positives = 32/38 (84%) Frame = -3
Query: 296 GFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEAL 183 G QYP+IA++I+ VAS DP HRKLFVRGLAW T+SE L Sbjct: 44 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETL 81
>tr|A9NVQ7|A9NVQ7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 442
Score = 57.0 bits (136), Expect = 7e-07 Identities = 24/37 (64%), Positives = 31/37 (83%) Frame = -3
Query: 284 PAIADDIREVASKDPAHRKLFVRGLAWETSSEALRDV 174 P + + IR++A KDPAHRK+FVRGL WET+SEAL+ V Sbjct: 74 PQLLESIRKLADKDPAHRKIFVRGLGWETTSEALKSV 110
>tr|Q2V9B8|Q2V9B8_SOLTU RNA-binding protein AKIP1-like OS=Solanum tuberosum PE=2 SV=1 Length = 498
Score = 51.6 bits (122), Expect = 3e-05 Identities = 21/41 (51%), Positives = 31/41 (75%) Frame = -3
Query: 290 QYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRDVSA 168 +YP ++I+++A KDPAHRK+FV GL W+T++E L V A Sbjct: 140 KYPDFKENIQKLADKDPAHRKIFVHGLGWDTTAETLTSVFA 180
>tr|A7PG82|A7PG82_VITVI Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017427001 PE=4 SV=1 Length = 516
Score = 50.8 bits (120), Expect = 5e-05 Identities = 20/39 (51%), Positives = 27/39 (69%) Frame = -3
Query: 290 QYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRDV 174 +YP D +R +A DPAHRK+FV GL W+T++E L V Sbjct: 176 KYPDFVDSVRRLADADPAHRKIFVHGLGWDTTAETLTSV 214
>tr|A5B1I9|A5B1I9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037734 PE=4 SV=1 Length = 478
Score = 50.8 bits (120), Expect = 5e-05 Identities = 20/39 (51%), Positives = 27/39 (69%) Frame = -3
Query: 290 QYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRDV 174 +YP D +R +A DPAHRK+FV GL W+T++E L V Sbjct: 138 KYPDFVDSVRRLADADPAHRKIFVHGLGWDTTAETLTSV 176
>tr|A9SEJ6|A9SEJ6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_44234 PE=4 SV=1 Length = 242
Score = 48.9 bits (115), Expect = 2e-04 Identities = 19/35 (54%), Positives = 28/35 (80%) Frame = -3
Query: 278 IADDIREVASKDPAHRKLFVRGLAWETSSEALRDV 174 + +IR++A KDP HRK+FVRGL W+T++E L+ V Sbjct: 50 VLHEIRKLADKDPGHRKIFVRGLGWDTTTETLKTV 84
>tr|A9TVT0|A9TVT0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_8989 PE=4 SV=1 Length = 84
Score = 47.4 bits (111), Expect = 5e-04 Identities = 21/24 (87%), Positives = 22/24 (91%) Frame = -3
Query: 248 KDPAHRKLFVRGLAWETSSEALRD 177 KDP HRKLFVRGLAWETSS ALR+ Sbjct: 1 KDPVHRKLFVRGLAWETSSVALRE 24
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