BP916470
Clone id YMU001_000088_A09
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000088_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AGATGAAAAAGACATTGCTGCATTTTCAAATTTAATATGGAGCTCTGCTGGTTGGCTCCA
TCATATAAGAAGGGTTTTTGTCCCTTCACTTTTATCATTAAAGCTTGCCGGCAAGCACAA
AGATGGTGTAGCCGGAATGTGAATGCCTTATTTTGATGCGGCGTGTGTGTGTGTGTGTTA
TCCTAATTCCCTATGGAGTATCAGGTCTTGAGTTCAAGACTCGTTGGATAGGTCTTTTGA
GGTCCCTCGGGAATGTTCCTACGATGTTAAAAACTCTCTCTAGCCCCTCCCCCTGTATAG
ACCAAAGCCATAACATTGTTGGTAATGTTGTGTCCTATGACTCCTTAACTGTCTCTGTGA
ACCTCTTCTAGGTGACGTGATAGTAAGTAAGAGATGACATAAATGAGTGAAGCCCCTCTT
GACTATGTAGGATGGCATGTAGCGTAGTTATTGGCTCTGTCAATCCACTTTGGTTGTGGC
AATGTCTGTTGCACCGCTCACTTGATGGCAAGCAACTG
■■Homology search results ■■ -
sp_hit_id P83006
Definition sp|P83006|PAFA2_RAT Platelet-activating factor acetylhydrolase 2, cytoplasmic OS=Rattus norvegicus
Align length 82
Score (bit) 32.7
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916470|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A09.
(505 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P83006|PAFA2_RAT Platelet-activating factor acetylhydrolase 2... 33 0.98
sp|Q75EA2|MON1_ASHGO Vacuolar fusion protein MON1 OS=Ashbya goss... 32 1.3
sp|Q32M07|CI098_MOUSE Putative adenylate kinase-like protein C9o... 31 3.7
sp|Q7S8B6|EXO84_NEUCR Exocyst complex component EXO84 OS=Neurosp... 30 6.4
sp|Q68FP8|CI098_RAT Putative adenylate kinase-like protein C9orf... 30 6.4
sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E OS=Clostridium b... 30 6.5

>sp|P83006|PAFA2_RAT Platelet-activating factor acetylhydrolase 2,
cytoplasmic OS=Rattus norvegicus GN=Pafah2 PE=1 SV=2
Length = 390

Score = 32.7 bits (73), Expect = 0.98
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +3

Query: 138 CECLILMRRVCVCVILIPYGVSGLEFKTRWIGLLRSLG----NVPTM----LKTLSSPSP 293
CE + + R CV L Y L++ RW+GLL ++G +P KT S P
Sbjct: 46 CEQPLWIPRYEYCVGLADY----LQYNKRWVGLLFNVGIGSCRLPVSWNGPFKTKESGYP 101

Query: 294 CIDQSHNIVGNVVSYDSLTVSV 359
I SH + G VSY + + +
Sbjct: 102 LIILSHGLGGFRVSYSAFCMEL 123


>sp|Q75EA2|MON1_ASHGO Vacuolar fusion protein MON1 OS=Ashbya
gossypii GN=MON1 PE=3 SV=1
Length = 654

Score = 32.3 bits (72), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +1

Query: 43 LCWLAPSYK------KGFCPFTFIIKACRQAQRWCSRNVNALF 153
L W+ PS++ G P ++K+ R WCSRN + LF
Sbjct: 605 LSWITPSFELYLLCNNGEIPKAVVMKSARNVVGWCSRNGHKLF 647


>sp|Q32M07|CI098_MOUSE Putative adenylate kinase-like protein
C9orf98 homolog OS=Mus musculus PE=2 SV=1
Length = 479

Score = 30.8 bits (68), Expect = 3.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3

Query: 189 PYGVSGLEFKTRWIG----LLRSLGNVPTMLKTLSSPSPCID 302
P G+S +E + + ++R L + P +LKT+SS PC+D
Sbjct: 207 PEGISEIETAKKLLEYHRHIIRILPSYPKILKTISSDQPCVD 248


>sp|Q7S8B6|EXO84_NEUCR Exocyst complex component EXO84 OS=Neurospora
crassa GN=exo-84 PE=3 SV=2
Length = 683

Score = 30.0 bits (66), Expect = 6.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3

Query: 308 ALVYTGGGARESF*HRRNIPEGPQKT 231
A++ GGG ESF +R PE P+KT
Sbjct: 365 AIMVRGGGQNESFIYRTEKPEDPEKT 390


>sp|Q68FP8|CI098_RAT Putative adenylate kinase-like protein C9orf98
homolog OS=Rattus norvegicus PE=2 SV=1
Length = 479

Score = 30.0 bits (66), Expect = 6.4
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +3

Query: 180 ILIPYGVSGLEFKTRWIG----LLRSLGNVPTMLKTLSSPSPCID 302
++ P G+S ++ + + ++R L + P +LKT+SS PC+D
Sbjct: 204 LIQPEGISEIDTAKKLLEYHRHIIRILPSYPKILKTISSDQPCVD 248


>sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E OS=Clostridium
botulinum PE=1 SV=2
Length = 1251

Score = 30.0 bits (66), Expect = 6.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1

Query: 502 SERCNRHCHNQSGLTEPITTLHAILHSQEGLHSFMSSLTYYHVT*KR 362
S R N +C N+ +T +H ++HS GL+ T Y +T K+
Sbjct: 191 SFRFNDNCMNEFIQDPALTLMHELIHSLHGLYGAKGITTKYTITQKQ 237


tr_hit_id A6AYY0
Definition tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport systems inner membrane component OS=Vibrio parahaemolyticus AQ3810
Align length 53
Score (bit) 33.9
E-value 4.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916470|Adiantum capillus-veneris mRNA, clone:
YMU001_000088_A09.
(505 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport syste... 34 4.5
tr|Q87Q13|Q87Q13_VIBPA Putative permease of ABC transporter OS=V... 33 7.6
tr|Q6W205|Q6W205_RHISN Spermidine/putrescine transport system pe... 33 9.9
tr|Q1VDQ2|Q1VDQ2_VIBAL Putative permease of ABC transporter OS=V... 33 9.9
tr|A7K0C8|A7K0C8_9VIBR ABC-type spermidine/putrescine transport ... 33 9.9

>tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport systems
inner membrane component OS=Vibrio parahaemolyticus
AQ3810 GN=A79_6211 PE=3 SV=1
Length = 426

Score = 33.9 bits (76), Expect = 4.5
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3

Query: 177 VILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
V+L+P+ S L T WI LL++ G + +L S I HN G VVS
Sbjct: 246 VVLLPFWTSLLVRTTSWIVLLQNQGVINDLLMWSGLTSERIQMIHNTFGTVVS 298


>tr|Q87Q13|Q87Q13_VIBPA Putative permease of ABC transporter
OS=Vibrio parahaemolyticus GN=VP1337 PE=3 SV=1
Length = 426

Score = 33.1 bits (74), Expect = 7.6
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3

Query: 177 VILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
V+L+P+ S L T WI LL++ G + +L S I HN G VVS
Sbjct: 246 VVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGLTSERIQMIHNTFGTVVS 298


>tr|Q6W205|Q6W205_RHISN Spermidine/putrescine transport system
permease protein potB OS=Rhizobium sp. (strain NGR234)
GN=potB PE=3 SV=1
Length = 420

Score = 32.7 bits (73), Expect = 9.9
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3

Query: 162 RVCVCVILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
R + ++L+P+ S L T W+ LL+S G V ++L L S ++ HN VG +++
Sbjct: 235 RWLLMLVLLPFWTSLLVRTTAWLVLLQSNGVVNSLLSWLGLISQPLELVHNRVGVLIA 292


>tr|Q1VDQ2|Q1VDQ2_VIBAL Putative permease of ABC transporter
OS=Vibrio alginolyticus 12G01 GN=V12G01_19277 PE=3 SV=1
Length = 426

Score = 32.7 bits (73), Expect = 9.9
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3

Query: 177 VILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
++L+P+ S L T WI LL++ G + +L S I HN G VVS
Sbjct: 246 IVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGFTSERIQMIHNTFGTVVS 298


>tr|A7K0C8|A7K0C8_9VIBR ABC-type spermidine/putrescine transport
system, permease component I OS=Vibrio sp. Ex25
GN=VEx25_1079 PE=3 SV=1
Length = 426

Score = 32.7 bits (73), Expect = 9.9
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3

Query: 177 VILIPYGVSGLEFKTRWIGLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 335
++L+P+ S L T WI LL++ G + +L S I HN G VVS
Sbjct: 246 IVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGFTSERIQMIHNTFGTVVS 298