BP916427 |
Clone id |
YMU001_000087_E11 |
Library |
YMU01 |
Length |
467 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000087_E11. |
Accession |
BP916427 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTTTTTTGCTTCTTAACTGTACCATTTGAATCAACAAAGGAGACACTACCTGTGCCCTTT GCAGGGCATTCAACATTATTGCCAACCCCCACAATGACTGGTTCTTGTAGTGGCTGCATG GAACTGTATAGACTTTTCTCACTAGTCATGTGACGGGAGGCACCACTGTCTAACACCCAT GAGCAATCTGAGGTCGACTCATGAGTAGAGGAGCACAACTCTTCAATAGCTACAAATAGT TCCAGCTCTGTTTGAGCTGTGTTGGCTGACTCGTTAGCCTTGCTTCCCTTTGAAGTGCCG TTTTTCTCCTCTGCCTTCTTAATCCGACAGTCTTGAATTTTGTGGCCCTTCTTCTTGCAG TGGAAGCACTCACCCTTGAACTTCTTCTTCTTCTTATCCCCATCCTTGTCTGCTTTTTTG GAAGAATTTCCTTTGCCTTTTGCATTGGCTGTGAACGCAGTAGCACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P25601 |
Definition |
sp|P25601|YCH5_YEAST Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae |
Align length |
115 |
Score (bit) |
44.3 |
E-value |
0.0003 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q53QA4 |
Definition |
tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica |
Align length |
112 |
Score (bit) |
50.4 |
E-value |
4.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916427|Adiantum capillus-veneris mRNA, clone: YMU001_000087_E11. (467 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-co... 50 4e-05 tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-co... 50 4e-05 tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-co... 50 4e-05 tr|Q0IN60|Q0IN60_ORYSJ Os12g0503600 protein OS=Oryza sativa subs... 50 4e-05 tr|Q0E1G5|Q0E1G5_ORYSJ Os02g0450400 protein OS=Oryza sativa subs... 50 4e-05 tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa G... 50 4e-05 tr|Q4P388|Q4P388_USTMA Putative uncharacterized protein OS=Ustil... 50 6e-05 tr|Q4P110|Q4P110_USTMA Putative uncharacterized protein OS=Ustil... 50 6e-05 tr|Q4P655|Q4P655_USTMA Putative uncharacterized protein OS=Ustil... 50 7e-05 tr|Q4P352|Q4P352_USTMA Putative uncharacterized protein OS=Ustil... 50 7e-05 tr|Q4P0C5|Q4P0C5_USTMA Putative uncharacterized protein OS=Ustil... 50 7e-05 tr|Q2EPY7|Q2EPY7_USTMA Hobase OS=Ustilago maydis PE=4 SV=1 50 7e-05 tr|Q4P9M5|Q4P9M5_USTMA Putative uncharacterized protein OS=Ustil... 49 1e-04 tr|Q9ZPU5|Q9ZPU5_ARATH Putative retroelement pol polyprotein OS=... 49 1e-04 tr|Q4PES0|Q4PES0_USTMA Putative uncharacterized protein OS=Ustil... 49 1e-04 tr|Q4P6Z1|Q4P6Z1_USTMA Putative uncharacterized protein OS=Ustil... 49 1e-04 tr|Q4P5J7|Q4P5J7_USTMA Putative uncharacterized protein OS=Ustil... 49 1e-04 tr|Q4P0C6|Q4P0C6_USTMA Putative uncharacterized protein OS=Ustil... 49 1e-04 tr|Q4PE74|Q4PE74_USTMA Putative uncharacterized protein OS=Ustil... 49 2e-04 tr|Q4P6Z0|Q4P6Z0_USTMA Putative uncharacterized protein OS=Ustil... 48 2e-04 tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 48 3e-04 tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 48 3e-04 tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 48 3e-04 tr|A5CA01|A5CA01_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04 tr|Q4P584|Q4P584_USTMA Putative uncharacterized protein OS=Ustil... 48 3e-04 tr|A5BPR9|A5BPR9_VITVI Putative uncharacterized protein OS=Vitis... 47 4e-04 tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b... 47 5e-04 tr|A5CAZ2|A5CAZ2_VITVI Putative uncharacterized protein OS=Vitis... 47 5e-04 tr|A5B9M8|A5B9M8_VITVI Putative uncharacterized protein OS=Vitis... 47 5e-04 tr|A5C3F9|A5C3F9_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04
>tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g17390 PE=4 SV=1 Length = 1373
Score = 50.4 bits (119), Expect = 4e-05 Identities = 28/112 (25%), Positives = 56/112 (50%) Frame = -1
Query: 338 IQDCRIKKAEEKNGTSKGSKANESANTAQTELELFVAIEELCSSTHESTSDCSWVLDSGA 159 I +C+ +A+E+ G + SA + + + + C + H+ W+LDS Sbjct: 242 IDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDE-----WILDSAC 296
Query: 158 SRHMTSEKSLYSSMQPLQEPVIVGVGNNVECPAKGTGSVSFVDSNGTVKKQK 3 S H+ ++++ +SS +P+Q+ +V +G++ C G GSV +G + K Sbjct: 297 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 348
>tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g31920 PE=4 SV=1 Length = 1333
Score = 50.4 bits (119), Expect = 4e-05 Identities = 28/112 (25%), Positives = 56/112 (50%) Frame = -1
Query: 338 IQDCRIKKAEEKNGTSKGSKANESANTAQTELELFVAIEELCSSTHESTSDCSWVLDSGA 159 I +C+ +A+E+ G + SA + + + + C + H+ W+LDS Sbjct: 242 IDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDE-----WILDSAC 296
Query: 158 SRHMTSEKSLYSSMQPLQEPVIVGVGNNVECPAKGTGSVSFVDSNGTVKKQK 3 S H+ ++++ +SS +P+Q+ +V +G++ C G GSV +G + K Sbjct: 297 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 348
>tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g34770 PE=4 SV=1 Length = 1333
Score = 50.4 bits (119), Expect = 4e-05 Identities = 28/112 (25%), Positives = 56/112 (50%) Frame = -1
Query: 338 IQDCRIKKAEEKNGTSKGSKANESANTAQTELELFVAIEELCSSTHESTSDCSWVLDSGA 159 I +C+ +A+E+ G + SA + + + + C + H+ W+LDS Sbjct: 242 IDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDE-----WILDSAC 296
Query: 158 SRHMTSEKSLYSSMQPLQEPVIVGVGNNVECPAKGTGSVSFVDSNGTVKKQK 3 S H+ ++++ +SS +P+Q+ +V +G++ C G GSV +G + K Sbjct: 297 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 348
>tr|Q0IN60|Q0IN60_ORYSJ Os12g0503600 protein OS=Oryza sativa subsp. japonica GN=Os12g0503600 PE=4 SV=1 Length = 1345
Score = 50.4 bits (119), Expect = 4e-05 Identities = 28/112 (25%), Positives = 56/112 (50%) Frame = -1
Query: 338 IQDCRIKKAEEKNGTSKGSKANESANTAQTELELFVAIEELCSSTHESTSDCSWVLDSGA 159 I +C+ +A+E+ G + SA + + + + C + H+ W+LDS Sbjct: 246 IDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDE-----WILDSAC 300
Query: 158 SRHMTSEKSLYSSMQPLQEPVIVGVGNNVECPAKGTGSVSFVDSNGTVKKQK 3 S H+ ++++ +SS +P+Q+ +V +G++ C G GSV +G + K Sbjct: 301 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 352
>tr|Q0E1G5|Q0E1G5_ORYSJ Os02g0450400 protein OS=Oryza sativa subsp. japonica GN=Os02g0450400 PE=4 SV=1 Length = 1350
Score = 50.4 bits (119), Expect = 4e-05 Identities = 28/112 (25%), Positives = 56/112 (50%) Frame = -1
Query: 338 IQDCRIKKAEEKNGTSKGSKANESANTAQTELELFVAIEELCSSTHESTSDCSWVLDSGA 159 I +C+ +A+E+ G + SA + + + + C + H+ W+LDS Sbjct: 242 IDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDE-----WILDSAC 296
Query: 158 SRHMTSEKSLYSSMQPLQEPVIVGVGNNVECPAKGTGSVSFVDSNGTVKKQK 3 S H+ ++++ +SS +P+Q+ +V +G++ C G GSV +G + K Sbjct: 297 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 348
>tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa GN=OSIGBa0146N20.7 PE=4 SV=1 Length = 1335
Score = 50.4 bits (119), Expect = 4e-05 Identities = 28/112 (25%), Positives = 56/112 (50%) Frame = -1
Query: 338 IQDCRIKKAEEKNGTSKGSKANESANTAQTELELFVAIEELCSSTHESTSDCSWVLDSGA 159 I +C+ +A+E+ G + SA + + + + C + H+ W+LDS Sbjct: 244 IDECKKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAGHDE-----WILDSAC 298
Query: 158 SRHMTSEKSLYSSMQPLQEPVIVGVGNNVECPAKGTGSVSFVDSNGTVKKQK 3 S H+ ++++ +SS +P+Q+ +V +G++ C G GSV +G + K Sbjct: 299 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 350
>tr|Q4P388|Q4P388_USTMA Putative uncharacterized protein OS=Ustilago maydis GN=UM05425.1 PE=4 SV=1 Length = 1690
Score = 50.1 bits (118), Expect = 6e-05 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 7/112 (6%) Frame = -1
Query: 338 IQDCRIK---KAEEKNGTSKGSKANE-SANTAQTEL-ELFVAIEELCSSTHESTSDCSWV 174 ++DC ++ K +++ K K + + N AQ + E+ + + + + + +W+ Sbjct: 322 LEDCFMEGGPKHKDRTEKQKQKKTKKVTGNLAQVDSDEMNLCLHVSTPDDNVAPQNDTWI 381
Query: 173 LDSGASRHMTSEKSLYSSM--QPLQEPVIVGVGNNVECPAKGTGSVSFVDSN 24 +DSGASRHMT +K+L+S+ P+QE V V +N P G G+V V SN Sbjct: 382 IDSGASRHMTGDKTLFSTYGPSPVQE---VFVADNRGVPVAGMGNVRLVMSN 430
>tr|Q4P110|Q4P110_USTMA Putative uncharacterized protein OS=Ustilago maydis GN=UM06203.1 PE=4 SV=1 Length = 1431
Score = 50.1 bits (118), Expect = 6e-05 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 7/112 (6%) Frame = -1
Query: 338 IQDCRIK---KAEEKNGTSKGSKANE-SANTAQTEL-ELFVAIEELCSSTHESTSDCSWV 174 ++DC ++ K +++ K K + + N AQ + E+ + + + + + +W+ Sbjct: 236 LEDCFMEGGPKHKDRTEKQKQKKTKKVTGNLAQVDSDEMNLCLHVSTPDDNVAPQNDTWI 295
Query: 173 LDSGASRHMTSEKSLYSSM--QPLQEPVIVGVGNNVECPAKGTGSVSFVDSN 24 +DSGASRHMT +K+L+S+ P+QE V V +N P G G+V V SN Sbjct: 296 IDSGASRHMTGDKTLFSTYGPSPVQE---VFVADNRGVPVAGMGNVRLVMSN 344
>tr|Q4P655|Q4P655_USTMA Putative uncharacterized protein OS=Ustilago maydis GN=UM04408.1 PE=4 SV=1 Length = 1834
Score = 49.7 bits (117), Expect = 7e-05 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 13/118 (11%) Frame = -1
Query: 338 IQDCRIK---KAEEKNGTSKGSKANE-SANTAQTELELFVAIEELCSSTHESTSDCS--- 180 ++DC ++ K +++ K K + + N AQ + + E+ H ST D + Sbjct: 270 LEDCFMEGGPKHKDRTEKQKQKKTKKVTGNLAQVDSD------EMNLCLHVSTPDDNVAP 323
Query: 179 ----WVLDSGASRHMTSEKSLYSSM--QPLQEPVIVGVGNNVECPAKGTGSVSFVDSN 24 W++DSGASRHMT +K+L+S+ P+QE V V +N P G G+V V SN Sbjct: 324 QNETWIIDSGASRHMTGDKTLFSTYGPSPVQE---VFVADNRGVPVAGMGNVRLVMSN 378
>tr|Q4P352|Q4P352_USTMA Putative uncharacterized protein OS=Ustilago maydis GN=UM05461.1 PE=4 SV=1 Length = 906
Score = 49.7 bits (117), Expect = 7e-05 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 13/118 (11%) Frame = -1
Query: 338 IQDCRIK---KAEEKNGTSKGSKANE-SANTAQTELELFVAIEELCSSTHESTSDCS--- 180 ++DC ++ K +++ K K + + N AQ + + E+ H ST D + Sbjct: 270 LEDCFMEGGPKHKDRTEKQKQKKTKKVTGNLAQVDSD------EMNLCLHVSTPDDNVAP 323
Query: 179 ----WVLDSGASRHMTSEKSLYSSM--QPLQEPVIVGVGNNVECPAKGTGSVSFVDSN 24 W++DSGASRHMT +K+L+S+ P+QE V V +N P G G+V V SN Sbjct: 324 QNETWIIDSGASRHMTGDKTLFSTYGPSPVQE---VFVADNRGVPVAGMGNVRLVMSN 378
|