BP916407
Clone id YMU001_000087_D02
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTGGAAGAATTCGCTTTTGTACATTGGCTTGTCTTCTTCGTCGCCTGGACAAATTATGAG
GCCTACAGATATCCTTCGGCCTGCTATGTCACTTCTTCTTAGCAAGTGGAGCGGGTGCTT
CCACTTAGCCTTCACATGTTCGTTTGCGGATTGTGCAATCTGTTTTGATTGCCTATATTC
ATCTCTTTTTTCCTTTGTTGCATTGGTCAACTAGCTCTATGTATGCTCTCATGTCAAAAG
TCTTAGATTTTTTTCGTGCAAAATAAGCATGCTAAGAAAGCCTTGTGATTTCTTTCAATG
AAACAACCAGTGCTCCCCTAAGCATTTTGGAGGGTTGAATATTTTGCATGTACTTATATA
TATGTTGGTTGACACCTTACGGGCTCCGTATGATCACCAACGAGGTAGCTCAAACAGCAC
ACAGTGACAACAGTAGGCTTTTATCAGTACCAGGCCCATTGCTCCCTTCTTTTTGGACAG
AGTGGCTCACTCCAGCCGAAATAAAAGCCATCCGTGTGTGGCTTTTCCCACCTACCATTC
AAGACATAGCCTT
■■Homology search results ■■ -
sp_hit_id P55985
Definition sp|P55985|TRUD_HELPY tRNA pseudouridine synthase D OS=Helicobacter pylori
Align length 72
Score (bit) 30.0
E-value 7.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916407|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_D02.
(539 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P55985|TRUD_HELPY tRNA pseudouridine synthase D OS=Helicobact... 30 7.5
sp|Q9HGM6|YHW5_SCHPO Putative transporter C543.05c OS=Schizosacc... 30 9.8
sp|Q6T7B7|CLEC1_BITGA C-type lectin 1 OS=Bitis gabonica PE=2 SV=1 30 9.8

>sp|P55985|TRUD_HELPY tRNA pseudouridine synthase D OS=Helicobacter
pylori GN=truD PE=3 SV=1
Length = 381

Score = 30.0 bits (66), Expect = 7.5
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = +1

Query: 229 LDFFRAK*AC*ESLVISFNETTSAPLSILEG*IFCMYLY-----ICWLTPYGLRMITNEV 393
L+FF+ K +S + + + P ILEG + C Y Y L G R + EV
Sbjct: 231 LEFFKQKNLSVDSDTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEV 290

Query: 394 AQTAHSDNSRLL 429
A T D + L
Sbjct: 291 APTGLLDGKKAL 302


>sp|Q9HGM6|YHW5_SCHPO Putative transporter C543.05c
OS=Schizosaccharomyces pombe GN=SPBC543.05c PE=2 SV=1
Length = 517

Score = 29.6 bits (65), Expect = 9.8
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3

Query: 144 ICFDCLYSSLFSF-VALVN*LYVCSHVKSLRFFSCKI 251
+C+ CL+S +F F +A+ N +Y H+ FSC+I
Sbjct: 124 LCWICLWSMIFHFIIAIANGVYFVKHITK---FSCEI 157


>sp|Q6T7B7|CLEC1_BITGA C-type lectin 1 OS=Bitis gabonica PE=2 SV=1
Length = 159

Score = 29.6 bits (65), Expect = 9.8
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = +1

Query: 55 ISFGLLCHFFLASGAGAST*PSH 123
ISFGLL FF SGA ST P H
Sbjct: 7 ISFGLLVVFFFLSGAKGSTCPFH 29


tr_hit_id Q72LA9
Definition tr|Q72LA9|Q72LA9_THET2 Glycine dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Align length 78
Score (bit) 33.9
E-value 5.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916407|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_D02.
(539 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q72LA9|Q72LA9_THET2 Glycine dehydrogenase OS=Thermus thermoph... 34 5.6
tr|Q5SKW8|Q5SKW8_THET8 Glycine dehydrogenase (Decarboxylating) s... 34 5.6
tr|P96493|P96493_THETH Putative glycine dehydrogenase (Decarboxy... 34 5.6
tr|B0JYV2|B0JYV2_XENTR LOC100145118 protein OS=Xenopus tropicali... 33 7.3
tr|Q01CH8|Q01CH8_OSTTA Chromosome 03 contig 1, DNA sequence OS=O... 33 9.5
tr|B6M382|B6M382_BRAFL Putative uncharacterized protein OS=Branc... 33 9.5

>tr|Q72LA9|Q72LA9_THET2 Glycine dehydrogenase OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=TT_C0150 PE=4 SV=1
Length = 438

Score = 33.9 bits (76), Expect = 5.6
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1

Query: 283 NETTSAPLSILEG*IFCMYLYICWLTPYGLRMITNEVAQTAHSDNSRLLSVPG--PLLPS 456
N TT+A L+ L G +Y+ L P GLR + + + AH ++ LL VPG P P
Sbjct: 318 NITTNAQLTALMG-----AMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK 372

Query: 457 -FWTEW--LTPAEIKAIR 501
F+ E+ P + +A+R
Sbjct: 373 PFFNEFALALPKDPEAVR 390


>tr|Q5SKW8|Q5SKW8_THET8 Glycine dehydrogenase (Decarboxylating)
subunit 1 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0525 PE=1 SV=1
Length = 438

Score = 33.9 bits (76), Expect = 5.6
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1

Query: 283 NETTSAPLSILEG*IFCMYLYICWLTPYGLRMITNEVAQTAHSDNSRLLSVPG--PLLPS 456
N TT+A L+ L G +Y+ L P GLR + + + AH ++ LL VPG P P
Sbjct: 318 NITTNAQLTALMG-----AMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK 372

Query: 457 -FWTEW--LTPAEIKAIR 501
F+ E+ P + +A+R
Sbjct: 373 PFFNEFALALPKDPEAVR 390


>tr|P96493|P96493_THETH Putative glycine dehydrogenase
(Decarboxylating) subunit 1 (Fragment) OS=Thermus
thermophilus GN=yqhj PE=4 SV=1
Length = 333

Score = 33.9 bits (76), Expect = 5.6
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1

Query: 283 NETTSAPLSILEG*IFCMYLYICWLTPYGLRMITNEVAQTAHSDNSRLLSVPG--PLLPS 456
N TT+A L+ L G +Y+ L P GLR + + + AH ++ LL VPG P P
Sbjct: 213 NITTNAQLTALMG-----AMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK 267

Query: 457 -FWTEW--LTPAEIKAIR 501
F+ E+ P + +A+R
Sbjct: 268 PFFNEFALALPKDPEAVR 285


>tr|B0JYV2|B0JYV2_XENTR LOC100145118 protein OS=Xenopus tropicalis
GN=LOC100145118 PE=2 SV=1
Length = 562

Score = 33.5 bits (75), Expect = 7.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2

Query: 181 KEKRDEYRQSKQIAQSANEHVKAKWKHPLHLLRRSDIAGRR 59
K+ + YR SK I+ S NEH + K HLL R + R
Sbjct: 494 KDSKSGYRDSKLISGSKNEHKMSSKKEDQHLLNRKSVKSSR 534


>tr|Q01CH8|Q01CH8_OSTTA Chromosome 03 contig 1, DNA sequence
OS=Ostreococcus tauri GN=Ot03g03240 PE=4 SV=1
Length = 162

Score = 33.1 bits (74), Expect = 9.5
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +1

Query: 361 PYGLRMITNEVAQTAHSDNSRLLSV 435
PYG IT VA AHSDNSR S+
Sbjct: 24 PYGTEYITAHVASAAHSDNSRPFSI 48


>tr|B6M382|B6M382_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_77675 PE=4 SV=1
Length = 350

Score = 33.1 bits (74), Expect = 9.5
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3

Query: 69 AMSLLLSKWSGCFHLAFTCSFADCAICFDCLYSSLFSF----VALVN*LYVCSHVKSLRF 236
A+SLL S + L F+CS A +I F C +++F A V+ L+ C
Sbjct: 268 AVSLLFSCSAAAVSLLFSCSTAAVSILFSCSAAAVFLLFSCSTAAVSILFSCFAADVSIL 327

Query: 237 FSCKISMLRKPCD 275
FSC + + C+
Sbjct: 328 FSCSTAAVSTRCN 340