BP916255
Clone id YMU001_000085_C02
Library
Length 324
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000085_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATTGAAACATCTTGGAATGATCAGAGTGTACAAGTTCTTCACATACGGTGCCGACCCAAG
ACTTCCCTCAAGAATATCAAAATCGAGAGAGAGAGAGAGAGAGACTACAACCAAAAAATT
GCGAAGATGTGCCTCATGTGACACGGTATCAGACTCGCCTTCATGTAACATGGTATCAGT
CTCATCTTCATGAATTTGCATCGACTACCCATTGCTGCCTCTGACTGAAGCTATGGTCTC
CATGGGTTCAGATGACCCTGCACCGTCACTTCCACCGTATGTGATATCACTCATGGCCTC
AACGGGCTCCGTGCCTCGATCACT
■■Homology search results ■■ -
sp_hit_id P22265
Definition sp|P22265|TSH_DROME Protein teashirt OS=Drosophila melanogaster
Align length 30
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916255|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_C02.
(324 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P22265|TSH_DROME Protein teashirt OS=Drosophila melanogaster ... 31 2.2
sp|Q3B7U2|TAF1A_RAT TATA box-binding protein-associated factor R... 29 6.3

>sp|P22265|TSH_DROME Protein teashirt OS=Drosophila melanogaster
GN=tsh PE=1 SV=2
Length = 954

Score = 30.8 bits (68), Expect = 2.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1

Query: 324 SDRGTEPVEAMSDITYGGSDGAGSSEPMET 235
+D +P+E MSDI GG+ G G+ E M +
Sbjct: 262 NDLVVDPLEKMSDIVKGGASGMGTKEKMHS 291


>sp|Q3B7U2|TAF1A_RAT TATA box-binding protein-associated factor RNA
polymerase I subunit A OS=Rattus norvegicus GN=Taf1a
PE=2 SV=1
Length = 453

Score = 29.3 bits (64), Expect = 6.3
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Frame = +3

Query: 123 EDVPHVTRY-QTRLHVTWYQSHLH----------EFASTTHCCL 221
ED P + + +TR+H W Q H+ +FA TT CL
Sbjct: 16 EDNPETSEFSKTRMHFPWLQKHIEAVVTGGKKRKDFAQTTSACL 59


tr_hit_id Q3ZP54
Definition tr|Q3ZP54|Q3ZP54_9ABAC Lef-8 (Fragment) OS=Peridroma margaritosa nucleopolyhedrovirus
Align length 47
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916255|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_C02.
(324 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3ZP54|Q3ZP54_9ABAC Lef-8 (Fragment) OS=Peridroma margaritosa... 34 4.1

>tr|Q3ZP54|Q3ZP54_9ABAC Lef-8 (Fragment) OS=Peridroma margaritosa
nucleopolyhedrovirus PE=4 SV=1
Length = 226

Score = 33.9 bits (76), Expect = 4.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3

Query: 66 PQEYQNXXXXXXXLQPKNCEDVPHVTRYQTRLHVTWYQSHLHEFAST 206
P EY N + + PHV+ ++L +YQ+HL+ FA+T
Sbjct: 114 PYEYHNPESVLRQVSGLRVRETPHVSHLMSKLLQYYYQNHLNMFATT 160