BP916216 |
Clone id |
YMU001_000084_F06 |
Library |
YMU01 |
Length |
331 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000084_F06. |
Accession |
BP916216 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL801Contig1 |
Sequence |
CTGCTCAAGATGGGGTGAAGTTGTGGGATTTGCGGAAGCTTAAAAATTTTCGGTCCTTTT CACCATATGATGCCAATACACCAACTAATGCAGTGGAGTTCGATTTCAGTGGGAATTACC TTGCTATTGCTGGTTCAGATGTAAGGATTTATCAAGTATCGGGTGTTAAACAGGATTGGA ACACTATCAAGGTTTTACCCGATCTCTCAGGGACAGGCAAAGTCACCTCTGTCAGATTTG GGCCACTTGCGAAGTACGTGGCAACTGGAACTGGGGACCGAACTCTAAGAATATTTGGTG TCCCTGTTGCATCATTAGAGGCTTGATCTAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q94BR4 |
Definition |
sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana |
Align length |
101 |
Score (bit) |
132.0 |
E-value |
4.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916216|Adiantum capillus-veneris mRNA, clone: YMU001_000084_F06. (331 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS... 132 4e-31 sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS... 119 5e-27 sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=C... 71 1e-12 sp|Q9JMJ4|PRP19_RAT Pre-mRNA-processing factor 19 OS=Rattus norv... 68 1e-11 sp|Q99KP6|PRP19_MOUSE Pre-mRNA-processing factor 19 OS=Mus muscu... 68 1e-11 sp|Q9UMS4|PRP19_HUMAN Pre-mRNA-processing factor 19 OS=Homo sapi... 68 1e-11 sp|Q5ZMA2|PRP19_CHICK Pre-mRNA-processing factor 19 OS=Gallus ga... 68 1e-11 sp|Q08E38|PRP19_BOVIN Pre-mRNA-processing factor 19 OS=Bos tauru... 68 1e-11 sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus mus... 42 0.001 sp|Q9C270|PWP2_NEUCR Periodic tryptophan protein 2 homolog OS=Ne... 42 0.001 sp|Q8YRI1|YY46_ANASP Uncharacterized WD repeat-containing protei... 42 0.001 sp|Q4P9P9|NUDF_USTMA Nuclear distribution protein PAC1 OS=Ustila... 41 0.002 sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus no... 41 0.002 sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo a... 41 0.002 sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sa... 41 0.002 sp|A2RRH5|WDR27_HUMAN WD repeat-containing protein 27 OS=Homo sa... 41 0.002 sp|Q5BDU4|HIR1_EMENI Protein hir1 OS=Emericella nidulans GN=hir1... 40 0.003 sp|Q0VA16|WDR70_XENTR WD repeat-containing protein 70 OS=Xenopus... 40 0.004 sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3... 40 0.004 sp|Q8N136|WDR69_HUMAN WD repeat-containing protein 69 OS=Homo sa... 40 0.005 sp|Q5I0B9|ATG16_XENTR Autophagy-related protein 16 OS=Xenopus tr... 39 0.006 sp|Q6GPP0|WDR70_XENLA WD repeat-containing protein 70 OS=Xenopus... 39 0.008 sp|Q04225|RRB1_YEAST Ribosome assembly protein RRB1 OS=Saccharom... 39 0.008 sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melano... 39 0.011 sp|Q5BK30|WDR69_RAT WD repeat-containing protein 69 OS=Rattus no... 39 0.011 sp|Q8TC44|WD51B_HUMAN WD repeat-containing protein 51B OS=Homo s... 38 0.018 sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subun... 38 0.018 sp|Q9C1X1|PWP2_SCHPO Periodic tryptophan protein 2 homolog OS=Sc... 38 0.018 sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus t... 37 0.024 sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norv... 37 0.024
>sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PUB59 PE=2 SV=1 Length = 523
Score = 132 bits (333), Expect = 4e-31 Identities = 65/101 (64%), Positives = 79/101 (78%) Frame = +3
Query: 3 AQDGVKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDWN 182 A DGV+LWDLRKLKNFR+F DAN+ VEFD SG+YL IA SD+R++Q + VK +WN Sbjct: 415 ALDGVRLWDLRKLKNFRTFDFPDANS----VEFDHSGSYLGIAASDIRVFQAASVKAEWN 470
Query: 183 TIKVLPDLSGTGKVTSVRFGPLAKYVATGTGDRTLRIFGVP 305 IK LPDLSGTGK TSV+FG +KY+A G+ DR LRIFG+P Sbjct: 471 PIKTLPDLSGTGKATSVKFGLDSKYIAVGSMDRNLRIFGLP 511
>sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PUB60 PE=2 SV=2 Length = 565
Score = 119 bits (298), Expect = 5e-27 Identities = 58/93 (62%), Positives = 72/93 (77%) Frame = +3
Query: 3 AQDGVKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDWN 182 A+DGV+LWDLRKL+NF+SF DAN+ VEFD SG+YL IA SD+++YQ + VK +WN Sbjct: 414 AEDGVRLWDLRKLRNFKSFLSADANS----VEFDPSGSYLGIAASDIKVYQTASVKAEWN 469
Query: 183 TIKVLPDLSGTGKVTSVRFGPLAKYVATGTGDR 281 IK LPDLSGTGK T V+FG A+YVA G+ DR Sbjct: 470 LIKTLPDLSGTGKATCVKFGSDAQYVAVGSMDR 502
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2 Length = 492
Score = 71.2 bits (173), Expect = 1e-12 Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 1/99 (1%) Frame = +3
Query: 3 AQDG-VKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDW 179 ++DG VKLWDLRKLKN ++F+ + P N++ FD +G +L I G V++ V + W Sbjct: 399 SEDGEVKLWDLRKLKNLKTFA-NEEKQPINSLSFDMTGTFLGIGGQKVQVLHV----KSW 453
Query: 180 NTIKVLPDLSGTGKVTSVRFGPLAKYVATGTGDRTLRIF 296 + + L D S G VT VRFG A+ + T + D++LR+F Sbjct: 454 SEVVSLSDHS--GPVTGVRFGENARSLVTCSLDKSLRVF 490
>sp|Q9JMJ4|PRP19_RAT Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2 Length = 504
Score = 68.2 bits (165), Expect = 1e-11 Identities = 39/96 (40%), Positives = 58/96 (60%) Frame = +3
Query: 15 VKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDWNTIKV 194 VKLWDLRKLKNF++ D N ++ FD SG YLA+ G+DV+IY + + W ++ Sbjct: 416 VKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT--EI 468
Query: 195 LPDLSGTGKVTSVRFGPLAKYVATGTGDRTLRIFGV 302 L +G T V FG AK++A+ DR+L+ + + Sbjct: 469 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504
Score = 34.3 bits (77), Expect = 0.20 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +3
Query: 114 NYLAIAGSDVRIYQVSGVKQDWNTIKVLPDLSG-TGKVTSVRFGPLAKYVATGTGDRTLR 290 N + G+D + V D +T ++L L G T KVTSV F P + V + + D T+R Sbjct: 235 NKILTGGADKNV-----VVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIR 289
Query: 291 IFGVPVAS 314 I+ VP S Sbjct: 290 IWSVPNTS 297
>sp|Q99KP6|PRP19_MOUSE Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1 Length = 504
Score = 68.2 bits (165), Expect = 1e-11 Identities = 39/96 (40%), Positives = 58/96 (60%) Frame = +3
Query: 15 VKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDWNTIKV 194 VKLWDLRKLKNF++ D N ++ FD SG YLA+ G+DV+IY + + W ++ Sbjct: 416 VKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT--EI 468
Query: 195 LPDLSGTGKVTSVRFGPLAKYVATGTGDRTLRIFGV 302 L +G T V FG AK++A+ DR+L+ + + Sbjct: 469 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504
Score = 34.3 bits (77), Expect = 0.20 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +3
Query: 114 NYLAIAGSDVRIYQVSGVKQDWNTIKVLPDLSG-TGKVTSVRFGPLAKYVATGTGDRTLR 290 N + G+D + V D +T ++L L G T KVTSV F P + V + + D T+R Sbjct: 235 NKILTGGADKNV-----VVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIR 289
Query: 291 IFGVPVAS 314 I+ VP S Sbjct: 290 IWSVPNTS 297
>sp|Q9UMS4|PRP19_HUMAN Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1 Length = 504
Score = 68.2 bits (165), Expect = 1e-11 Identities = 39/96 (40%), Positives = 58/96 (60%) Frame = +3
Query: 15 VKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDWNTIKV 194 VKLWDLRKLKNF++ D N ++ FD SG YLA+ G+DV+IY + + W ++ Sbjct: 416 VKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT--EI 468
Query: 195 LPDLSGTGKVTSVRFGPLAKYVATGTGDRTLRIFGV 302 L +G T V FG AK++A+ DR+L+ + + Sbjct: 469 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504
Score = 33.5 bits (75), Expect = 0.34 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +3
Query: 114 NYLAIAGSDVRIYQVSGVKQDWNTIKVLPDLSG-TGKVTSVRFGPLAKYVATGTGDRTLR 290 N + G+D + V D ++ ++L L G T KVTSV F P V + + D T+R Sbjct: 235 NKILTGGADKNV-----VVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIR 289
Query: 291 IFGVPVAS 314 I+ VP AS Sbjct: 290 IWSVPNAS 297
>sp|Q5ZMA2|PRP19_CHICK Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1 Length = 505
Score = 68.2 bits (165), Expect = 1e-11 Identities = 39/96 (40%), Positives = 58/96 (60%) Frame = +3
Query: 15 VKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDWNTIKV 194 VKLWDLRKLKNF++ D N ++ FD SG YLA+ G+DV+IY + + W ++ Sbjct: 417 VKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT--EI 469
Query: 195 LPDLSGTGKVTSVRFGPLAKYVATGTGDRTLRIFGV 302 L +G T V FG AK++A+ DR+L+ + + Sbjct: 470 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 505
Score = 31.6 bits (70), Expect = 1.3 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3
Query: 174 DWNTIKVLPDLSG-TGKVTSVRFGPLAKYVATGTGDRTLRIFGVPVAS 314 D ++ ++L L G + KVTSV F P V + + D T+RI+ VP AS Sbjct: 251 DKSSEQILATLKGHSKKVTSVVFHPSQDLVFSASPDATIRIWSVPNAS 298
>sp|Q08E38|PRP19_BOVIN Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1 Length = 504
Score = 68.2 bits (165), Expect = 1e-11 Identities = 39/96 (40%), Positives = 58/96 (60%) Frame = +3
Query: 15 VKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDWNTIKV 194 VKLWDLRKLKNF++ D N ++ FD SG YLA+ G+DV+IY + + W ++ Sbjct: 416 VKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT--EI 468
Query: 195 LPDLSGTGKVTSVRFGPLAKYVATGTGDRTLRIFGV 302 L +G T V FG AK++A+ DR+L+ + + Sbjct: 469 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504
Score = 34.3 bits (77), Expect = 0.20 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +3
Query: 114 NYLAIAGSDVRIYQVSGVKQDWNTIKVLPDLSG-TGKVTSVRFGPLAKYVATGTGDRTLR 290 N + G+D + V D ++ ++L L G T KVTSV F P + V + + D T+R Sbjct: 235 NKILTGGADKNV-----VVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIR 289
Query: 291 IFGVPVAS 314 I+ VP AS Sbjct: 290 IWSVPNAS 297
>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1 Length = 328
Score = 42.0 bits (97), Expect = 0.001 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 5/101 (4%) Frame = +3
Query: 9 DGVKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGSDVRIYQVSGVKQDWNT- 185 + VK+W+++ K ++ S + + P +AV F+ +G+ L ++GS G+ + W+ Sbjct: 145 ESVKIWEVKTGKCLKTLSAH--SDPISAVNFNCNGS-LIVSGS------YDGLCRIWDAA 195
Query: 186 ----IKVLPDLSGTGKVTSVRFGPLAKYVATGTGDRTLRIF 296 ++ L D G V+ V+F P KY+ T T D TL+++ Sbjct: 196 SGQCLRTLAD-EGNPPVSFVKFSPNGKYILTATLDNTLKLW 235
>sp|Q9C270|PWP2_NEUCR Periodic tryptophan protein 2 homolog OS=Neurospora crassa GN=B18D24.40 PE=3 SV=1 Length = 899
Score = 42.0 bits (97), Expect = 0.001 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Frame = +3
Query: 15 VKLWDLRKLKNFRSFSPYDANTPTNAVEFDFSGNYLAIAGS----DVRIYQVSGVKQDWN 182 ++ WDL + +NFR+F+ + + + D SG +A AGS D+ I+ V Sbjct: 405 IRAWDLIRYRNFRTFTAPE-RLSFSCMAVDPSGEIVA-AGSVDSFDIHIWSVQ------- 455
Query: 183 TIKVLPDLSG-TGKVTSVRFGPLAKYVATGTGDRTLRIFGV 302 T ++L LSG G V+S+ F P + +G+ DRT RI+ + Sbjct: 456 TGQLLDRLSGHEGPVSSLAFAPNGGLLVSGSWDRTARIWSI 496
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKG4 |
Definition |
tr|A9RKG4|A9RKG4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
107 |
Score (bit) |
175.0 |
E-value |
9.0e-43 |
Report |
|