BP916203
Clone id YMU001_000084_E04
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAATAAGGAGGTAGACTTTCATTTTTTGTGCAATTGAGACCTTCGTGCAAAAGCAAGGTC
TAATTTTTGTGGCACAAACAAAAATTTAAGCAACTATCTGTATTATGCAGCCCCCATAAA
CTAGATTCAGCAATTTGTTTTGTTCCGACTCTTGTACACAGTGTAGCTGCTATTCACTAA
CTGTAGCTCATCCTATCGCACTCTCTTGTTCACATTTTTGACAGTTCGCTTGTCTCTCAA
CTTTGTTCAATTCCTCCCAAAACAGCTTCAAGGTAGTTCTCCCTGTTCCTACAAATAATG
ATACATAAGGATGTTAATCCCTCATGTACTAAAGTCAAACCTCTGCCTCTATGTGTGTCT
GGGGGAGTAGGAAAGAAAAGAACACGCTACTGTACTCTTGCATGCAATGATCCCACAGCA
CCTTTTATATACTGAGCAACAGGCAAGTCAACCATCCTCAGCATTGTGACGTAAATCCAA
TCAAAATGCTCAG
■■Homology search results ■■ -
sp_hit_id A1JKW8
Definition sp|A1JKW8|MDTD_YERE8 Putative multidrug resistance protein mdtD OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
Align length 46
Score (bit) 30.8
E-value 3.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916203|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E04.
(493 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A1JKW8|MDTD_YERE8 Putative multidrug resistance protein mdtD ... 31 3.5
sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taur... 30 5.9
sp|B1JSD2|MDTD_YERPY Putative multidrug resistance protein mdtD ... 30 7.8
sp|Q668C4|MDTD_YERPS Putative multidrug resistance protein mdtD ... 30 7.8
sp|A4TMR4|MDTD_YERPP Putative multidrug resistance protein mdtD ... 30 7.8
sp|Q1CK62|MDTD_YERPN Putative multidrug resistance protein mdtD ... 30 7.8
sp|A9QZU7|MDTD_YERPG Putative multidrug resistance protein mdtD ... 30 7.8
sp|Q7CJL1|MDTD_YERPE Putative multidrug resistance protein mdtD ... 30 7.8
sp|B2K9M2|MDTD_YERPB Putative multidrug resistance protein mdtD ... 30 7.8
sp|Q1C5L8|MDTD_YERPA Putative multidrug resistance protein mdtD ... 30 7.8
sp|A7FG15|MDTD_YERP3 Putative multidrug resistance protein mdtD ... 30 7.8

>sp|A1JKW8|MDTD_YERE8 Putative multidrug resistance protein mdtD
OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=mdtD PE=3 SV=2
Length = 469

Score = 30.8 bits (68), Expect = 3.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G +GS+ AR+ +L F TP G G T H GL + +II
Sbjct: 259 YSLGLIGSMSARIGSGMLPFMTPVFLQIGLGFTPFHAGLMMIPMII 304


>sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos
taurus GN=SIL1 PE=2 SV=1
Length = 462

Score = 30.0 bits (66), Expect = 5.9
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3

Query: 95 SCLNFCLCHKN 63
SC NFCLCHKN
Sbjct: 24 SCFNFCLCHKN 34


>sp|B1JSD2|MDTD_YERPY Putative multidrug resistance protein mdtD
OS=Yersinia pseudotuberculosis serotype O:3 (strain
YPIII) GN=mdtD PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 7.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G VGS+ AR+ +L F TP G G + H GL + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|Q668C4|MDTD_YERPS Putative multidrug resistance protein mdtD
OS=Yersinia pseudotuberculosis GN=mdtD PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 7.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G VGS+ AR+ +L F TP G G + H GL + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|A4TMR4|MDTD_YERPP Putative multidrug resistance protein mdtD
OS=Yersinia pestis (strain Pestoides F) GN=mdtD PE=3
SV=1
Length = 465

Score = 29.6 bits (65), Expect = 7.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G VGS+ AR+ +L F TP G G + H GL + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|Q1CK62|MDTD_YERPN Putative multidrug resistance protein mdtD
OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdtD
PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 7.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G VGS+ AR+ +L F TP G G + H GL + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|A9QZU7|MDTD_YERPG Putative multidrug resistance protein mdtD
OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdtD
PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 7.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G VGS+ AR+ +L F TP G G + H GL + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|Q7CJL1|MDTD_YERPE Putative multidrug resistance protein mdtD
OS=Yersinia pestis GN=mdtD PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 7.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G VGS+ AR+ +L F TP G G + H GL + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|B2K9M2|MDTD_YERPB Putative multidrug resistance protein mdtD
OS=Yersinia pseudotuberculosis serotype IB (strain
PB1/+) GN=mdtD PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 7.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G VGS+ AR+ +L F TP G G + H GL + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|Q1C5L8|MDTD_YERPA Putative multidrug resistance protein mdtD
OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdtD
PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 7.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
Y G VGS+ AR+ +L F TP G G + H GL + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


tr_hit_id A0CEY8
Definition tr|A0CEY8|A0CEY8_PARTE Chromosome undetermined scaffold_173, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 94
Score (bit) 33.1
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916203|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E04.
(493 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0CEY8|A0CEY8_PARTE Chromosome undetermined scaffold_173, who... 33 7.1

>tr|A0CEY8|A0CEY8_PARTE Chromosome undetermined scaffold_173, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00037794001 PE=4 SV=1
Length = 1183

Score = 33.1 bits (74), Expect = 7.1
Identities = 23/94 (24%), Positives = 35/94 (37%)
Frame = +3

Query: 99 CIMQPP*TRFSNLFCSDSCTQCSCYSLTVAHPIALSCSHF*QFACLSTLFNSSQNSFKVV 278
CI Q SN DSC+Q + + C+ + T+ NS N
Sbjct: 1015 CIWQEQVNSTSNCLQMDSCSQANSIEKNCKN---FGCAFIPEALINGTVQNSQCNQMDCS 1071

Query: 279 LPVPTNNDT*GC*SLMY*SQTSASMCVWGSRKEK 380
L P +N GC L+ ++C W ++ K
Sbjct: 1072 LLNPNSNSDIGCKPLINTINKQITLCAWSTKTNK 1105