BP916193
Clone id YMU001_000084_D05
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTTAAAAGTGATGATGCAGTGGATGATGAGACTGAAGCCTCAGGTAAGAGAAGCCGACAA
GGGGCGAAGCCAAAGAAGGATGCTATGGTCTCTGGGGCTGGCCGAGCGTAGAGGAAAGCT
CCAAGGATTTGATTGTTCCAACTCTTGTATCTTCTAGAAGCGGTAAATGTGGATGCTGGA
TTCTTCAAGGTGATGTTGGTGATGATGGAGAGCTTGGGCAGTAGTGTAAATGCTGGCCTA
GAAGAAATGCCCAGAATGATACATGTCTTGCATAAGAGGGAAGTGGTGGCTCCATTTGGC
CACCAGTGTAAGGTATTTGATGTATTCCTTATGTTGTTTTCATATATCCAAGATGGAGGA
GACTTGTGTATACTCATTATGCCCTCAAATCTTTAGGGGGAGGGGCTGTTAATGTCCTTT
TGTAAGATGTAC
■■Homology search results ■■ -
sp_hit_id Q54ML4
Definition sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog OS=Dictyostelium discoideum
Align length 60
Score (bit) 32.0
E-value 0.99
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916193|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D05.
(418 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog O... 32 0.99
sp|P46947|CWC26_YEAST Pre-mRNA-splicing factor CWC26 OS=Saccharo... 31 2.2
sp|Q12884|SEPR_HUMAN Seprase OS=Homo sapiens GN=FAP PE=1 SV=4 30 3.8
sp|Q42396|CDPKC_ARATH Calcium-dependent protein kinase 12 OS=Ara... 30 4.9
sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles g... 29 6.4
sp|Q5UR32|YR556_MIMIV Uncharacterized protein R556 OS=Acanthamoe... 29 8.4
sp|Q2J2E9|UGPC_RHOP2 sn-glycerol-3-phosphate import ATP-binding ... 29 8.4
sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondr... 29 8.4
sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 1 OS=Arab... 27 9.0

>sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog
OS=Dictyostelium discoideum GN=heatr1 PE=3 SV=1
Length = 2237

Score = 32.0 bits (71), Expect = 0.99
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2

Query: 8 DDETEASGKRSRQGAKPKKDAMVSGAGRA*RKAPRI*LFQLLYLLEAVNVDAGFFKVMLV 187
DDE S KPKK +V+G ++ + P I LL+ + VN A K + V
Sbjct: 1929 DDEENGSDDEESDEDKPKKKKLVNGKSKSTKTQPEISKDNLLFFYKIVNSLASNLKTIFV 1988


>sp|P46947|CWC26_YEAST Pre-mRNA-splicing factor CWC26
OS=Saccharomyces cerevisiae GN=BUD13 PE=1 SV=1
Length = 266

Score = 30.8 bits (68), Expect = 2.2
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = -2

Query: 186 TNITLKNPASTFTASRRYKSWNNQILGAFLYARPAPE 76
+++T+++PA TFT + ++ +LG LY +PAPE
Sbjct: 186 SSLTIEDPAITFTHDKE-RTVKTSLLGRKLYDKPAPE 221


>sp|Q12884|SEPR_HUMAN Seprase OS=Homo sapiens GN=FAP PE=1 SV=4
Length = 760

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2

Query: 417 YILQKDINSPSP*RFEGIMS-IHKSPPSWIYENNIRNTSNTLHWWPNG 277
Y+ Q+ + P F G + I P W+YE + T L W PNG
Sbjct: 171 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLPTKYALWWSPNG 218


>sp|Q42396|CDPKC_ARATH Calcium-dependent protein kinase 12
OS=Arabidopsis thaliana GN=CPK12 PE=1 SV=1
Length = 490

Score = 29.6 bits (65), Expect = 4.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = +1

Query: 85 WPSVEESSKDLIVPTLVSSRSGK-------CGCWILQGDVGDDGEL 201
WPS+ ES+KDLI L S+ + C WI+ V D L
Sbjct: 246 WPSISESAKDLIKKMLESNPKKRLTAHQVLCHPWIVDDKVAPDKPL 291


>sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles
gambiae GN=nkd PE=2 SV=1
Length = 886

Score = 29.3 bits (64), Expect = 6.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2

Query: 276 ATTSLLCKTCIILGISSRPAFTLLPKLSIITNITLKNPASTFTASRRYK 130
+T +L+C C+ G P TLLP LS + + + P++ T + K
Sbjct: 457 STAALICHDCVDGGA---PTTTLLPPLSTLETVVIPAPSAGVTGRAKRK 502


>sp|Q5UR32|YR556_MIMIV Uncharacterized protein R556 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R556 PE=4 SV=1
Length = 293

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2

Query: 345 PPSWIYENNIRNTSNTLHWWPNGATTSLLCKTCII 241
P +W YE N +N LH+ + L C CII
Sbjct: 110 PNNWYYEKT--NNTNVLHYIESHMINQLFCTICII 142


>sp|Q2J2E9|UGPC_RHOP2 sn-glycerol-3-phosphate import ATP-binding
protein ugpC OS=Rhodopseudomonas palustris (strain HaA2)
GN=ugpC PE=3 SV=1
Length = 364

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2

Query: 99 LYARPAPETIASFFGFAPCRLLLPEA 22
+YARPA +ASF G P L+L +A
Sbjct: 222 VYARPATTFVASFIGAPPMNLMLLDA 247


>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial
OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1
Length = 582

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1

Query: 73 GLWGWPSVEESSKDLIVPTLVSSRSGKCGCWILQGDVGDDGELG 204
G G+P ++ + K+L+ +S+R + C L D+G D +G
Sbjct: 431 GRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMG 474


>sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 1
OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1
Length = 610

Score = 26.6 bits (57), Expect(2) = 9.0
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +1

Query: 85 WPSVEESSKDLIVPTLV-------SSRSGKCGCWILQGDVGDDGEL 201
WPS+ ES+KDL+ LV ++ C W+ V D L
Sbjct: 374 WPSISESAKDLVRKMLVRDPKKRLTAHQVLCHPWVQVDGVAPDKPL 419



Score = 20.8 bits (42), Expect(2) = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2

Query: 185 VMMESLGSSVNAGLEEMPRMI 247
V+ ESL AGL+EM MI
Sbjct: 443 VIAESLSEEEIAGLKEMFNMI 463


tr_hit_id Q2YCH0
Definition tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)
Align length 47
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916193|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D05.
(418 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis OS=Nitros... 35 2.4

>tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis
OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
11849) GN=Nmul_A0243 PE=4 SV=1
Length = 463

Score = 34.7 bits (78), Expect = 2.4
Identities = 21/47 (44%), Positives = 25/47 (53%)
Frame = -2

Query: 237 GISSRPAFTLLPKLSIITNITLKNPASTFTASRRYKSWNNQILGAFL 97
GIS R A T L LS+ TNIT NPAS + K N ++ FL
Sbjct: 359 GISQRSALTRLESLSVQTNITPLNPASVPSEPSSPKLLLNTLISIFL 405