BP916178
Clone id YMU001_000084_C02
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAGAGCTACCTGGCTGTGCATACCCAACAAGAGTTTGTACCTGTATCGCTTGCCCTGTCC
AACCATATCCCCTACTCACAGGAGCCTGAAATCCGATATCATCATGGAGTAGCACTTCCT
GAAGTCCCTGCATCTAAGCTTTGAGGTCCGTCAATGATTTTAGACTTTTCTTGCAATGCG
TGTCGCAAAGCAAAAATAGTAGCGTCTCTATCCGCAATCGCGCTCTCTACAACACGCAGA
GAGCCCTGCATAGTTGCGTATGTAGCGGAGTGGCATTGGTGTGTAGCAGCCGACAGCTCT
GCTCCAAGCTCAATGGTAGCAATGACCTGCCTGGACTCCTGCTCTTCTCCTCTCTCTTTA
ATGACAACCTATTCAAGAGATTAGGCTTTGGGAGATATGCGACCAACTGGTTCTATTCAT
TTGCTTGTTTGTTATCTTTTTTAGCATGATGACCTTTGCATCTTGTGTAATATCCGAAAT
T
■■Homology search results ■■ -
sp_hit_id Q1QGE2
Definition sp|Q1QGE2|RS20_NITHX 30S ribosomal protein S20 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
Align length 30
Score (bit) 30.8
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916178|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_C02.
(481 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q1QGE2|RS20_NITHX 30S ribosomal protein S20 OS=Nitrobacter ha... 31 3.3
sp|Q9I2Q2|METH_PSEAE Methionine synthase OS=Pseudomonas aerugino... 30 5.6
sp|Q3SMV1|RS20_NITWN 30S ribosomal protein S20 OS=Nitrobacter wi... 30 7.4
sp|Q9ZEM5|LIFO2_BURCE Lipase chaperone OS=Burkholderia cepacia G... 29 9.6

>sp|Q1QGE2|RS20_NITHX 30S ribosomal protein S20 OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=rpsT PE=3 SV=1
Length = 88

Score = 30.8 bits (68), Expect = 3.3
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = -3

Query: 251 MQGSLRVVESAIA--DRDATIFALRHALQE 168
M+GS+R+VE AIA DRDA I A++ A E
Sbjct: 28 MRGSVRIVEEAIAKGDRDAAIQAMKRAEPE 57


>sp|Q9I2Q2|METH_PSEAE Methionine synthase OS=Pseudomonas aeruginosa
GN=metH PE=3 SV=1
Length = 1234

Score = 30.0 bits (66), Expect = 5.6
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -3

Query: 230 VESAIADRDATIFALRHALQEKSKIIDG 147
+ S + DR A + AL+HAL+E+ I+DG
Sbjct: 1 MSSPLTDRSARLQALQHALRERILILDG 28


>sp|Q3SMV1|RS20_NITWN 30S ribosomal protein S20 OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsT PE=3
SV=1
Length = 88

Score = 29.6 bits (65), Expect = 7.4
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = -3

Query: 251 MQGSLRVVESAIA--DRDATIFALRHALQE 168
M+G++R+VE AIA DRDA I A++ A E
Sbjct: 28 MRGTVRIVEEAIAKGDRDAAIQAMKRAEPE 57


>sp|Q9ZEM5|LIFO2_BURCE Lipase chaperone OS=Burkholderia cepacia
GN=lifO PE=3 SV=1
Length = 344

Score = 29.3 bits (64), Expect = 9.6
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = -3

Query: 362 IKERGEEQESRQVIATIELGAELSA---------ATHQCHSATYATMQGSLRVVESAIAD 210
+++ G ++ + T LG E +A A+ Q A YAT + + + D
Sbjct: 252 LQKSGATPDAMRAQLTQTLGPEAAARVAQMQQDDASWQSRYADYATQRAEIESAGLSPQD 311

Query: 209 RDATIFALRHALQEKSKIIDGPQSLDAGTSGSA 111
RDA I ALR K SLD G +GSA
Sbjct: 312 RDAQIAALRQRTFTKPGEAVRAASLDRG-AGSA 343


tr_hit_id A4RVV7
Definition tr|A4RVV7|A4RVV7_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901)
Align length 79
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916178|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_C02.
(481 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4RVV7|A4RVV7_OSTLU Predicted protein OS=Ostreococcus lucimar... 35 2.4
tr|B5J7V0|B5J7V0_9RHOB Site-specific recombinase, phage integras... 34 4.1
tr|Q6ES34|Q6ES34_ORYSJ Os09g0413600 protein OS=Oryza sativa subs... 33 9.2
tr|A8IEW8|A8IEW8_CHLRE Predicted protein (Fragment) OS=Chlamydom... 33 9.2
tr|B7P812|B7P812_IXOSC Angiomotin, putative OS=Ixodes scapularis... 33 9.2

>tr|A4RVV7|A4RVV7_OSTLU Predicted protein OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_31113 PE=4 SV=1
Length = 1345

Score = 34.7 bits (78), Expect = 2.4
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = -3

Query: 359 KERGEEQESRQVIATIELGAELSAATHQCHSATYATMQGSLRVVESAIADRDATIFALRH 180
K + EQ +AT EL AEL++ + + + A Q V A ++ +A + + R
Sbjct: 775 KSKALEQAQASSVATSELEAELASTRSELEAKSKALEQAQASSV--ATSELEAELASTRS 832

Query: 179 ALQEKSKIIDGPQSLDAGT 123
L+ KSK ++ Q+L + T
Sbjct: 833 ELEAKSKALEQAQALSSET 851



Score = 34.3 bits (77), Expect = 3.2
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = -3

Query: 359 KERGEEQESRQVIATIELGAELSAATHQCHSATYATMQGSLRVVESAIADRDATIFALRH 180
K + EQ +AT EL AEL++ + + + A Q V A ++ +A + + R
Sbjct: 403 KSKALEQAQASSVATSELEAELASTRSELEAKSKALEQAQASSV--ATSELEAELASTRS 460

Query: 179 ALQEKSKIIDGPQSLDAGTS 120
L+ KSK ++ Q+ TS
Sbjct: 461 ELEAKSKALEQAQASSVATS 480



Score = 34.3 bits (77), Expect = 3.2
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = -3

Query: 359 KERGEEQESRQVIATIELGAELSAATHQCHSATYATMQGSLRVVESAIADRDATIFALRH 180
K + EQ +AT EL AEL++ + + + A Q V A ++ +A + + R
Sbjct: 527 KSKALEQAQASSVATSELEAELASTRSELEAKSKALEQAQASSV--ATSELEAELASTRS 584

Query: 179 ALQEKSKIIDGPQSLDAGTS 120
L+ KSK ++ Q+ TS
Sbjct: 585 ELEAKSKALEQAQASSVATS 604



Score = 34.3 bits (77), Expect = 3.2
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = -3

Query: 359 KERGEEQESRQVIATIELGAELSAATHQCHSATYATMQGSLRVVESAIADRDATIFALRH 180
K + EQ +AT EL AEL++ + + + A Q V A ++ +A + + R
Sbjct: 713 KSKALEQAQASSVATSELEAELASTRSELEAKSKALEQAQASSV--ATSELEAELASTRS 770

Query: 179 ALQEKSKIIDGPQSLDAGTS 120
L+ KSK ++ Q+ TS
Sbjct: 771 ELEAKSKALEQAQASSVATS 790


>tr|B5J7V0|B5J7V0_9RHOB Site-specific recombinase, phage integrase
family protein OS=Octadecabacter antarcticus 307
GN=OA307_1642 PE=4 SV=1
Length = 448

Score = 33.9 bits (76), Expect = 4.1
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -2

Query: 129 RDFRKCYSMMISDFRLL*VGDMVGQGKRYRYKLLLGMHS 13
RD+R +S +SD+ L +G + GQ RY LLG HS
Sbjct: 145 RDYRVTFSSCLSDWEHLPLGQLNGQMVATRYSKLLGQHS 183


>tr|Q6ES34|Q6ES34_ORYSJ Os09g0413600 protein OS=Oryza sativa subsp.
japonica GN=P0643D11.22-1 PE=4 SV=1
Length = 1136

Score = 32.7 bits (73), Expect = 9.2
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Frame = -3

Query: 368 VVIKERGEEQESRQVIATIELGAELSAATHQCHSATYATMQG--------SLRVVESAIA 213
VV++E EE++SR+V+ + + TH T +G ++RV ES +
Sbjct: 194 VVMEEEEEEEQSREVVEAAAAAPMIVSTTHNYRFLTERDFRGFVKEPEAITVRVQESFVP 253

Query: 212 DRDATIFALRHALQ-EKSKIIDG 147
+ A+ A Q E+ +++DG
Sbjct: 254 SPELEAVAVAAAAQPEERRVVDG 276


>tr|A8IEW8|A8IEW8_CHLRE Predicted protein (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_143981 PE=4
SV=1
Length = 290

Score = 32.7 bits (73), Expect = 9.2
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -3

Query: 353 RGEEQESRQVIATIE---LGAELSAATHQCHSATYATMQGSLRVVESAIADRDATIFALR 183
R E E + +I +E LGA +A +H SA A M+ + + S +DRD + +LR
Sbjct: 51 RATESERQLLIVQVERLELGARRAAESHS--SALSAEMERRDQELGSIRSDRDEQVGSLR 108

Query: 182 HALQEKSKIIDGPQS 138
L E ++ +DG ++
Sbjct: 109 RRLGETAEQLDGARA 123


>tr|B7P812|B7P812_IXOSC Angiomotin, putative OS=Ixodes scapularis
GN=IscW_ISCW016798 PE=4 SV=1
Length = 535

Score = 32.7 bits (73), Expect = 9.2
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -3

Query: 341 QESRQVIATIELGA-----ELSAATHQCHSATYATMQGSLRVVESAIADRDATIFALRHA 177
QES ++IA + +L AA +C A +G L+ +ES +A++DA I L+
Sbjct: 361 QESEKLIAQVRSEKLKQMDDLYAAQRKC-----AEQEGKLKDLESRLAEKDAMIRVLQQH 415

Query: 176 LQEKSKII 153
QEK ++
Sbjct: 416 SQEKDAVL 423