BP916133
Clone id YMU001_000083_E07
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATTCGCGGCCGCGAATGAATTTGTTGACTTGGTATTTCCTGTGATGTCAAATGCAAGCCC
TTATGATTCAATACCAACACAATTTACAGACACATCATTCTGAGGGCTTGTTCAAGTTTC
GCCAAGCTACATAACTACTACATTACATTGCAAGTCTCATTGCCACATTCCCTAATAGCT
TTCCACACACACACAAATCCTTCAGGAAAAGTTCTCAACATATATTCCACCCTCTGTGCG
GCTTGCTGCACAGTGGCTACAAAGAATTAAGCCATCAAAGTGTAGTGACTGATGGGTGAA
ACCACAGAAGGGTTGAGATAATATGCTTCCCGGAAGCATCCCACATCAAGCACTTCTTCC
CAATTCACAATGTTTCCTGACACGGACATTGTTCCTTTCATTAAGGTCCTCTTGAATAGC
GTTGGATCCTGTTGGTCTTTCCTTCTA
■■Homology search results ■■ -
sp_hit_id Q5FVN8
Definition sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus
Align length 51
Score (bit) 29.3
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916133|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_E07.
(431 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing p... 29 7.1
sp|O60146|YNSG_SCHPO Uncharacterized transporter C18H10.16 OS=Sc... 29 9.3

>sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing
protein 1 OS=Rattus norvegicus GN=Wdsub1 PE=2 SV=1
Length = 476

Score = 29.3 bits (64), Expect = 7.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +3

Query: 81 ILRACSSFAKLHNYYITLQVSLPHSLIAFHTHT------NPSGKVLNIYST 215
+L CS + Y ++ LPHS + FHT+ +PSG VL ST
Sbjct: 24 LLATCSLDKTIRLYSLSDFAELPHSPLKFHTYAVHCCSFSPSGHVLASCST 74


>sp|O60146|YNSG_SCHPO Uncharacterized transporter C18H10.16
OS=Schizosaccharomyces pombe GN=SPBC18H10.16 PE=1 SV=2
Length = 1050

Score = 28.9 bits (63), Expect = 9.3
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Frame = +2

Query: 140 LIATFPNSFPHTHKSFRKSSQHIFH--------PLCGLLHS 238
L P THKSFRKS +++ P C L+HS
Sbjct: 1001 LFTVLPAPLADTHKSFRKSEEYVDDLLIFMEGLPPCALIHS 1041


tr_hit_id Q6X4F5
Definition tr|Q6X4F5|Q6X4F5_EAV Glycoprotein 3 OS=Equine arteritis virus
Align length 87
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916133|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_E07.
(431 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6X4F5|Q6X4F5_EAV Glycoprotein 3 OS=Equine arteritis virus GN... 33 5.5

>tr|Q6X4F5|Q6X4F5_EAV Glycoprotein 3 OS=Equine arteritis virus
GN=ORF3 PE=4 SV=1
Length = 163

Score = 33.5 bits (75), Expect = 5.5
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2

Query: 95 FKFRQAT*LLHYIASLIATFPNSFPHTHKSFRKSSQHIFHPLCGLLH--SGYKELSHQSV 268
+++ T L+H A+LI TFP+ TH ++ C L + SG ELS V
Sbjct: 72 YEYAGVTMLVHLFANLILTFPSLVNCTHPVSVYANASCVQVACRLENSTSGLGELSFSFV 131

Query: 269 VTDG*NHRRVEIICFPEASHIKHFFPI 349
D H R +IC+ A + HF P+
Sbjct: 132 DEDLRLHIRPTLICW-FALLLVHFLPM 157