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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915979
Clone id YMU001_000081_D03
Library
Length 267
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATCAGTCTGTTGTGACACTGTTCCAAACAGACTAACAGTATTACTTGCATCTGTCCAAA
GCTCAAAAGGCCAGCGAGTCTTGAGACCTTTTAACATGTCAGACAATGGGGCAACATTAT
GCAAAGTTTTGAATATGCGAACTATATGTCTGATACAATCCAACAAATGAATGCACATCA
TATGCAATCTCAAGCATAGATCACTTTCTTACAACACTCGTCTTTGTTGAGTCTAAACGA
ATACCATCAGGAGAGATGATATAGCCC
■■Homology search results ■■ -
sp_hit_id P10401
Definition sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster
Align length 49
Score (bit) 35.8
E-value 0.069
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915979|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_D03.
         (267 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra...    36   0.069
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra...    33   0.45 
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra...    30   2.9  
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra...    30   5.0  
sp|O94370|YG04_SCHPO Uncharacterized mitochondrial carrier C1604...    29   8.5  
sp|Q07864|DPOE1_HUMAN DNA polymerase epsilon catalytic subunit A...    29   8.5  

>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
           transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1035

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           G+I+S DG + D  K   +++    +  Y V SF+GL   Y   I++FA
Sbjct: 387 GFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFA 435


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
           transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1058

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           G++++PDGI+ +  K   ++K  +     ++ +F+GL   Y   I NFA
Sbjct: 412 GHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
           transposon opus OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1003

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           GYI++ DGI+ D  K   + +        ++  F+G+   Y   IQ++A
Sbjct: 328 GYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYA 376


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
           transposon 297 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1059

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           G+I++PDGI+ +  K   +    +     ++ +F+GL   Y   I N+A
Sbjct: 411 GHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYA 459


>sp|O94370|YG04_SCHPO Uncharacterized mitochondrial carrier C1604.04
           OS=Schizosaccharomyces pombe GN=SPBC1604.04 PE=2 SV=1
          Length = 314

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 260 IISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA*C 114
           ++SP G+ L ST + V+       I + V + V   QT+ S+ ++F  C
Sbjct: 185 VLSPLGLALSSTLSGVIAGAGSKAIMFPVDTVVKTLQTFPSNYKSFKDC 233


>sp|Q07864|DPOE1_HUMAN DNA polymerase epsilon catalytic subunit A
            OS=Homo sapiens GN=POLE PE=1 SV=5
          Length = 2286

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 160  DCIRHIVRIFKTLHNVAPLSDMLKGLKTRWPFELWTDASNTVSLFGTVSQQ 8
            D I ++  I  ++H+      +       W F LW D SN   + G VS +
Sbjct: 1882 DAIAYVEYITSSIHSKETFHSLTISFSRCWEFLLWMDPSNYGGIKGKVSSR 1932
tr_hit_id A5B9Y2
Definition tr|A5B9Y2|A5B9Y2_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 49
Score (bit) 40.4
E-value 0.044
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915979|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_D03.
         (267 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B9Y2|A5B9Y2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.044
tr|A5AGW4|A5AGW4_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|B8MI88|B8MI88_9EURO Retrotransposon polyprotein, putative OS=...    38   0.22 
tr|Q53M39|Q53M39_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   0.64 
tr|Q53JK4|Q53JK4_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   0.64 
tr|Q2R2N6|Q2R2N6_ORYSJ Retrotransposon protein, putative, unclas...    37   0.64 
tr|A8NZB3|A8NZB3_COPC7 Putative uncharacterized protein OS=Copri...    37   0.64 
tr|Q94I07|Q94I07_ORYSA Putative retroelement OS=Oryza sativa GN=...    36   1.1  
tr|Q7XRT3|Q7XRT3_ORYSJ OSJNBa0042F21.10 protein OS=Oryza sativa ...    36   1.1  
tr|Q7XRN3|Q7XRN3_ORYSJ OSJNBa0024J22.19 protein OS=Oryza sativa ...    36   1.1  
tr|Q7XRJ2|Q7XRJ2_ORYSJ OSJNBa0042D13.18 protein OS=Oryza sativa ...    36   1.1  
tr|Q7XR16|Q7XR16_ORYSJ OSJNBb0022F23.14 protein OS=Oryza sativa ...    36   1.1  
tr|Q7XG23|Q7XG23_ORYSJ Retrotransposon protein, putative, Ty3-gy...    36   1.1  
tr|Q6UUN7|Q6UUN7_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    36   1.1  
tr|Q6UUM9|Q6UUM9_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    36   1.1  
tr|Q53MW9|Q53MW9_ORYSJ Retrotransposon protein, putative, Ty3-gy...    36   1.1  
tr|Q53L74|Q53L74_ORYSJ Retrotransposon protein, putative, Ty3-gy...    36   1.1  
tr|Q53JB7|Q53JB7_ORYSJ Retrotransposon gag protein, putative OS=...    36   1.1  
tr|Q53J66|Q53J66_ORYSJ Retrotransposon protein, putative, Ty3-gy...    36   1.1  
tr|Q01KW5|Q01KW5_ORYSA H0211A12.9 protein OS=Oryza sativa GN=H02...    36   1.1  
tr|A4GMN5|A4GMN5_9POAL Gag-pol polyprotein (Fragment) OS=Panicum...    36   1.1  
tr|Q0GA04|Q0GA04_DROME Pol protein OS=Drosophila melanogaster PE...    36   1.1  
tr|Q0GA01|Q0GA01_DROME Pol protein OS=Drosophila melanogaster PE...    36   1.1  
tr|O44384|O44384_DROME Prgag-pol OS=Drosophila melanogaster GN=p...    36   1.1  
tr|A5YVH7|A5YVH7_DROME Pol protein (Fragment) OS=Drosophila mela...    36   1.1  
tr|Q8SA87|Q8SA87_MAIZE Putative polyprotein OS=Zea mays GN=Z195D...    35   1.4  
tr|Q7XPJ7|Q7XPJ7_ORYSJ OSJNBa0087O24.13 protein OS=Oryza sativa ...    35   1.4  
tr|Q2QTF6|Q2QTF6_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   1.4  
tr|A5APK7|A5APK7_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A4GMN4|A4GMN4_9POAL Gag-pol polyprotein (Fragment) OS=Panicum...    35   1.4  

>tr|A5B9Y2|A5B9Y2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017100 PE=4 SV=1
          Length = 587

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           GYI+S +GI++D +K   +R   M +   +V SF GL   Y   I+NF+
Sbjct: 167 GYIVSAEGIKVDDSKVKAIRSWPMPKTVGEVRSFHGLASFYRRFIKNFS 215


>tr|A5AGW4|A5AGW4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016361 PE=4 SV=1
          Length = 1043

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA-*CCPIV*HVK 90
           G+++S +GI +D TK   V K    +  ++V SF+GL   Y   ++NF+   CP+    +
Sbjct: 425 GHMVSQEGISVDPTKVEAVTKWERPKNVFEVRSFLGLAGYYRRFVENFSRIACPM---TR 481

Query: 89  RSQDSLAF*ALDRCK 45
            +   + F   DRC+
Sbjct: 482 LTXKGVNFDWNDRCE 496


>tr|B8MI88|B8MI88_9EURO Retrotransposon polyprotein, putative
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_040520 PE=4
           SV=1
          Length = 754

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           G+I++P+GI++D +K   V K +M    Y V SF+G    Y   I+ ++
Sbjct: 350 GFIVTPEGIKVDPSKIDAVVKWTMPTTVYRVQSFLGFCNFYRKFIEAYS 398


>tr|Q53M39|Q53M39_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           sub-class OS=Oryza sativa subsp. japonica PE=4 SV=1
          Length = 1222

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           GY+++P GI +D +K   +R   + +    V SF+GL   Y   +++F+
Sbjct: 741 GYVVTPQGIEVDESKIEAIRSWPVPQTITQVRSFLGLAGFYRRFVKDFS 789


>tr|Q53JK4|Q53JK4_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g14330 PE=4 SV=1
          Length = 1182

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           GY+++P GI +D +K   +R   + +    V SF+GL   Y   +++F+
Sbjct: 741 GYVVTPQGIEVDESKIEAIRSWPVPQTITQVRSFLGLAGFYRRFVKDFS 789


>tr|Q2R2N6|Q2R2N6_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g35200 PE=4 SV=1
          Length = 1369

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNF 123
           G+IISP+G+  DS K +VV+   +     ++ SF+GL   Y   ++N+
Sbjct: 739 GHIISPNGVSTDSDKIAVVQSWPVPSSVKELRSFLGLAGYYRKFVRNY 786


>tr|A8NZB3|A8NZB3_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_12747 PE=4 SV=1
          Length = 741

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           GYI+SP G+ + + KT  ++    L    D+ SF+G    Y   I N++
Sbjct: 398 GYILSPAGLTMSADKTKTIQDWPELRSVKDIQSFLGFANFYRRFIHNYS 446


>tr|Q94I07|Q94I07_ORYSA Putative retroelement OS=Oryza sativa
            GN=OSJNBa0034E23.18 PE=4 SV=1
          Length = 2447

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 266  GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
            GY+++P GI +D  K   ++     +    V SF+GL   Y   +Q+F+
Sbjct: 918  GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFS 966


>tr|Q7XRT3|Q7XRT3_ORYSJ OSJNBa0042F21.10 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0042F21.10 PE=4 SV=2
          Length = 2388

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           GY+++P GI +D  K   ++     +    V SF+GL   Y   +Q+F+
Sbjct: 754 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFS 802


>tr|Q7XRN3|Q7XRN3_ORYSJ OSJNBa0024J22.19 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0024J22.19 PE=4 SV=2
          Length = 1667

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 266 GYIISPDGIRLDSTKTSVVRK*SMLEIAYDVHSFVGLYQTYSSHIQNFA 120
           GY+++P GI +D  K   ++     +    V SF+GL   Y   +Q+F+
Sbjct: 841 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFS 889