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NBDC - LSDB Archive
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BP915974
Clone id YMU001_000081_C07
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGACTAAATACATGCACTTGCATACATCAGTGAAAACAAAAAAATGCTTAGTGTTAGAGC
AACTATGGACTACATCCCTCTTAAATACCAGTAAAACATTTACTGCGAGACATGCATTTC
CAGGAATTGCTCATGGCACTCCGTTACTATTGGCACACACAAAGACTACGTAATGAAAAA
TTGTCACCCTCACACATATAATCGAAAAGGGTATGAAACTTTTCCAAGGTGTTAAAAATA
TCAATGGCCATATACTATCCATTCTCTCCATGGCATTCTTTGAAGTGAAGCCTTGATTTC
TATGCTTCCAAGCGCTGCAGCACTTTGCTTAGCGAAGGCATCACATCGTAAGCAAGATAA
GTTCTTCTCAAATCCAAGATTGCATCAACAATAATAAGCATTGAGGTAAACCCGATAGAA
TCTCCATGATGAAGATGGCGAAACTGATTGTCGACAAGGGTAGAAGTAATGACAAGAAGA
CT
■■Homology search results ■■ -
sp_hit_id P92472
Definition sp|P92472|CYB_BRALA Cytochrome b OS=Branchiostoma lanceolatum
Align length 68
Score (bit) 30.4
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915974|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_C07.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P92472|CYB_BRALA Cytochrome b OS=Branchiostoma lanceolatum GN...    30   4.4  
sp|O47431|CYB_BRAFL Cytochrome b OS=Branchiostoma floridae GN=MT...    30   4.4  
sp|P20255|PA2A_PSEAU Phospholipase A2 isozyme PA-12A OS=Pseudech...    30   5.7  
sp|P04056|PA21B_PSEAU Phospholipase A2 isozyme PA-11 OS=Pseudech...    29   9.8  
sp|Q48QZ2|FTHS2_STRPM Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|A2RGS2|FTHS2_STRPG Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|Q1J4C0|FTHS2_STRPF Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|Q1JEK4|FTHS2_STRPD Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|Q1JJK1|FTHS2_STRPC Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|Q1J9F2|FTHS2_STRPB Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|Q8NZ49|FTHS2_STRP8 Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|Q5X9K7|FTHS2_STRP6 Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|Q8K5L8|FTHS2_STRP3 Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  
sp|Q99XR2|FTHS2_STRP1 Formate--tetrahydrofolate ligase 2 OS=Stre...    29   9.8  

>sp|P92472|CYB_BRALA Cytochrome b OS=Branchiostoma lanceolatum
           GN=MT-CYB PE=2 SV=2
          Length = 380

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -2

Query: 235 LTPWKSFIPFSIICVRVTIFH--YVVFVCANSNGVP*AIPGNACLAVNVLLVFKRDVVHS 62
           LT  +++IP + +   V I    Y +F  A    +P  + G   LA++++++F    VHS
Sbjct: 251 LTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIVVLFFMPFVHS 310

Query: 61  CSNTKHFF 38
              T H F
Sbjct: 311 SRQTSHNF 318


>sp|O47431|CYB_BRAFL Cytochrome b OS=Branchiostoma floridae
           GN=MT-CYB PE=3 SV=1
          Length = 380

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -2

Query: 235 LTPWKSFIPFSIICVRVTIFH--YVVFVCANSNGVP*AIPGNACLAVNVLLVFKRDVVHS 62
           LT  +++IP + +   V I    Y +F  A    +P  + G   LA++++++F    VHS
Sbjct: 251 LTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIVVLFFMPFVHS 310

Query: 61  CSNTKHFF 38
              T H F
Sbjct: 311 SRQTSHNF 318


>sp|P20255|PA2A_PSEAU Phospholipase A2 isozyme PA-12A OS=Pseudechis
           australis PE=1 SV=1
          Length = 118

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +2

Query: 128 CSWHSVTIGTHKDYVMKNC--HPHTYNRKGYE-TFPRC*KYQWPYT--IHSLHGIL*SEA 292
           C W     GT  D + + C  H + Y + G +  FP+   Y W  T  + + +     ++
Sbjct: 29  CGWGGS--GTPVDELDRCCQVHDNCYEQAGKKGCFPKLTLYSWKCTGNVPTCNSKTGCKS 86

Query: 293 LISMLPSAAALCLAKASHRKQD 358
            +    +AAA C AKA ++K++
Sbjct: 87  FVCACDAAAAKCFAKAPYKKEN 108


>sp|P04056|PA21B_PSEAU Phospholipase A2 isozyme PA-11 OS=Pseudechis
           australis PE=1 SV=1
          Length = 118

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +2

Query: 128 CSWHSVTIGTHKDYVMKNC--HPHTYNRKGYE-TFPRC*KYQWPYT--IHSLHGIL*SEA 292
           C W     GT  D + + C  H + Y + G +  FP+   Y W  T  + + +     ++
Sbjct: 29  CGWGGS--GTPVDELDRCCQVHDNCYEQAGKKGCFPKLTLYSWKCTGNVPTCNSKPGCKS 86

Query: 293 LISMLPSAAALCLAKASHRKQD 358
            +    +AAA C AKA ++K++
Sbjct: 87  FVCACDAAAAKCFAKAPYKKEN 108


>sp|Q48QZ2|FTHS2_STRPM Formate--tetrahydrofolate ligase 2
           OS=Streptococcus pyogenes serotype M28 GN=fhs2 PE=3 SV=1
          Length = 557

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 470 ITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDV 342
           + + L+DN   H+HHG+S+G  S  I    ++D+    L + V
Sbjct: 140 LLAALIDN---HIHHGNSLGIDSRRITWKRVVDMNDRQLRHIV 179


>sp|A2RGS2|FTHS2_STRPG Formate--tetrahydrofolate ligase 2
           OS=Streptococcus pyogenes serotype M5 (strain Manfredo)
           GN=fhs2 PE=3 SV=1
          Length = 557

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 470 ITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDV 342
           + + L+DN   H+HHG+S+G  S  I    ++D+    L + V
Sbjct: 140 LLAALIDN---HIHHGNSLGIDSRRITWKRVVDMNDRQLRHIV 179


>sp|Q1J4C0|FTHS2_STRPF Formate--tetrahydrofolate ligase 2
           OS=Streptococcus pyogenes serotype M4 (strain MGAS10750)
           GN=fhs2 PE=3 SV=1
          Length = 557

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 470 ITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDV 342
           + + L+DN   H+HHG+S+G  S  I    ++D+    L + V
Sbjct: 140 LLAALIDN---HIHHGNSLGIDSRRITWKRVVDMNDRQLRHIV 179


>sp|Q1JEK4|FTHS2_STRPD Formate--tetrahydrofolate ligase 2
           OS=Streptococcus pyogenes serotype M2 (strain MGAS10270)
           GN=fhs2 PE=3 SV=1
          Length = 557

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 470 ITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDV 342
           + + L+DN   H+HHG+S+G  S  I    ++D+    L + V
Sbjct: 140 LLAALIDN---HIHHGNSLGIDSRRITWKRVVDMNDRQLRHIV 179


>sp|Q1JJK1|FTHS2_STRPC Formate--tetrahydrofolate ligase 2
           OS=Streptococcus pyogenes serotype M12 (strain MGAS9429)
           GN=fhs2 PE=3 SV=1
          Length = 557

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 470 ITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDV 342
           + + L+DN   H+HHG+S+G  S  I    ++D+    L + V
Sbjct: 140 LLAALIDN---HIHHGNSLGIDSRRITWKRVVDMNDRQLRHIV 179


>sp|Q1J9F2|FTHS2_STRPB Formate--tetrahydrofolate ligase 2
           OS=Streptococcus pyogenes serotype M12 (strain MGAS2096)
           GN=fhs2 PE=3 SV=1
          Length = 557

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 470 ITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDV 342
           + + L+DN   H+HHG+S+G  S  I    ++D+    L + V
Sbjct: 140 LLAALIDN---HIHHGNSLGIDSRRITWKRVVDMNDRQLRHIV 179
tr_hit_id A3B3T0
Definition tr|A3B3T0|A3B3T0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 69
Score (bit) 70.9
E-value 3.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915974|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_C07.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3B3T0|A3B3T0_ORYSJ Putative uncharacterized protein OS=Oryza...    71   3e-11
tr|Q0DIE1|Q0DIE1_ORYSJ Os05g0397700 protein OS=Oryza sativa subs...    69   1e-10
tr|A2Y4E5|A2Y4E5_ORYSI Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|B6U7Q0|B6U7Q0_MAIZE Preprotein translocase secY subunit OS=Ze...    69   2e-10
tr|B4FP23|B4FP23_MAIZE Putative uncharacterized protein OS=Zea m...    69   2e-10
tr|Q9SIQ4|Q9SIQ4_ARATH Putative preprotein translocase SECY prot...    67   4e-10
tr|A7PU98|A7PU98_VITVI Chromosome chr7 scaffold_31, whole genome...    66   7e-10
tr|A5C2B5|A5C2B5_VITVI Putative uncharacterized protein OS=Vitis...    66   7e-10
tr|A4S1P5|A4S1P5_OSTLU IISP family transporter: preprotein trans...    38   0.28 
tr|B0IWP5|B0IWP5_RHILT CDP-alcohol phosphatidyltransferase OS=Rh...    35   1.8  
tr|Q012Z3|Q012Z3_OSTTA Preprotein translocase SecY subunit (ISS)...    35   2.4  
tr|B6AJN4|B6AJN4_9CRYT Putative uncharacterized protein OS=Crypt...    33   7.0  
tr|B4JFF3|B4JFF3_DROGR GH19309 OS=Drosophila grimshawi GN=GH1930...    33   7.0  

>tr|A3B3T0|A3B3T0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017702 PE=3 SV=1
          Length = 825

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 38/69 (55%), Positives = 51/69 (73%)
 Frame = -1

Query: 482 SLLVITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQRLEA 303
           SLL  +S L+D   R ++ G SIGFTS+LIIV +I++LRR+Y AY+VMP+LSKVL+R E 
Sbjct: 500 SLLATSSLLLDRYLRQINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPALSKVLRRYE- 558

Query: 302 *KSRLHFKE 276
                HFK+
Sbjct: 559 --EEGHFKK 565


>tr|Q0DIE1|Q0DIE1_ORYSJ Os05g0397700 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0397700 PE=3 SV=1
          Length = 542

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 35/60 (58%), Positives = 47/60 (78%)
 Frame = -1

Query: 482 SLLVITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQRLEA 303
           SLL  +S L+D   R ++ G SIGFTS+LIIV +I++LRR+Y AY+VMP+LSKVL+R  A
Sbjct: 483 SLLATSSLLLDRYLRQINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPALSKVLRRYGA 542


>tr|A2Y4E5|A2Y4E5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19872 PE=3 SV=1
          Length = 518

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 35/60 (58%), Positives = 47/60 (78%)
 Frame = -1

Query: 482 SLLVITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQRLEA 303
           SLL  +S L+D   R ++ G SIGFTS+LIIV +I++LRR+Y AY+VMP+LSKVL+R  A
Sbjct: 459 SLLATSSLLLDRYLRQINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPALSKVLRRYGA 518


>tr|B6U7Q0|B6U7Q0_MAIZE Preprotein translocase secY subunit OS=Zea
           mays PE=2 SV=1
          Length = 524

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 35/60 (58%), Positives = 47/60 (78%)
 Frame = -1

Query: 482 SLLVITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQRLEA 303
           SLL  +S L+D   R ++ G SIGFTS+LIIV +I++LRR+Y AY+VMP+LSKVL+R  A
Sbjct: 465 SLLATSSLLLDRYLRQINEGLSIGFTSVLIIVGSIIELRRSYQAYNVMPALSKVLRRYGA 524


>tr|B4FP23|B4FP23_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 280

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 35/60 (58%), Positives = 47/60 (78%)
 Frame = -1

Query: 482 SLLVITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQRLEA 303
           SLL  +S L+D   R ++ G SIGFTS+LIIV +I++LRR+Y AY+VMP+LSKVL+R  A
Sbjct: 221 SLLATSSLLLDRYLRQINEGLSIGFTSVLIIVGSIIELRRSYQAYNVMPALSKVLRRYGA 280


>tr|Q9SIQ4|Q9SIQ4_ARATH Putative preprotein translocase SECY protein
           OS=Arabidopsis thaliana GN=At2g31530 PE=3 SV=1
          Length = 556

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 33/57 (57%), Positives = 45/57 (78%)
 Frame = -1

Query: 482 SLLVITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQR 312
           S L   ST++D+  R ++ G SIGFTS+LIIV +I++LRR+Y AY+VMPSLSK L+R
Sbjct: 497 SFLATASTVLDHYLRSINQGFSIGFTSVLIIVGSIIELRRSYHAYNVMPSLSKALKR 553


>tr|A7PU98|A7PU98_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023712001
           PE=3 SV=1
          Length = 451

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 32/57 (56%), Positives = 44/57 (77%)
 Frame = -1

Query: 482 SLLVITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQR 312
           S L   ST++D+  R ++ G SIGFTS+LIIV +I++LRR+Y AY+VMP LSK L+R
Sbjct: 392 SFLATMSTILDHYLRRINQGFSIGFTSVLIIVGSIIELRRSYQAYNVMPDLSKALRR 448


>tr|A5C2B5|A5C2B5_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_011897 PE=3 SV=1
          Length = 1622

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 32/57 (56%), Positives = 44/57 (77%)
 Frame = -1

Query: 482  SLLVITSTLVDNQFRHLHHGDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQR 312
            S L   ST++D+  R ++ G SIGFTS+LIIV +I++LRR+Y AY+VMP LSK L+R
Sbjct: 1344 SFLATMSTILDHYLRRINQGFSIGFTSVLIIVGSIIELRRSYQAYNVMPDLSKALRR 1400


>tr|A4S1P5|A4S1P5_OSTLU IISP family transporter: preprotein
           translocase SecY subunit OS=Ostreococcus lucimarinus
           (strain CCE9901) GN=OSTLU_33175 PE=3 SV=1
          Length = 421

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -1

Query: 425 GDSIGFTSMLIIVDAILDLRRTYLAYDVMPSLSKVLQRL 309
           G SIG TSMLI+V  ++ ++R   A   MP + +VLQ +
Sbjct: 383 GQSIGLTSMLIVVSTVIAVKRQIQAMSQMPKMDEVLQTM 421


>tr|B0IWP5|B0IWP5_RHILT CDP-alcohol phosphatidyltransferase
           OS=Rhizobium leguminosarum bv. trifolii WSM1325
           GN=RlegDRAFT_3413 PE=3 SV=1
          Length = 192

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -2

Query: 256 SIWPLIFLTPWKSFIPFSIICVRVTIFHYVVFV 158
           ++WPL+++T W++FIP +   V ++    V+F+
Sbjct: 139 ALWPLLYITGWEAFIPLAATVVGLSRLEQVIFI 171