BP915954
Clone id YMU001_000081_A01
Library
Length 337
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CGGGGGAGTGCGTATTGATGTATGCTTTATGTGGTTCAAAGACTGATTCACTTTGATTGT
CAGCATAGTCGTGTCGGCTTATCGGTACAAGTGAAGTTATATTTTGCCTTCGCAAAAAAT
TTCGTGCGTTCATAGATTCCTCAAGCTCCCCATTCATTTTTGTGAAAAGATGTGCATTGC
TATATGCGTATCGGCTGTGATGTATGATATCTGTGGTTTGACCTGCTCTAGCCTGGCTAT
CACAGGTCTTTGACAGTTTACAGGTTTGTAGATGACAGGCATTTGGCAAATTATGGTTTT
GCAGCAGTTCACAAATGTGGAAAGTTTATACATATAG
■■Homology search results ■■ -
sp_hit_id A0ZZ25
Definition sp|A0ZZ25|RPOC2_GOSBA DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense
Align length 79
Score (bit) 33.9
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915954|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_A01.
(337 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A0ZZ25|RPOC2_GOSBA DNA-directed RNA polymerase subunit beta''... 34 0.26
sp|Q2L8Z5|RPOC2_GOSHI DNA-directed RNA polymerase subunit beta''... 33 0.34
sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta''... 32 0.99
sp|A4GYP8|RPOC2_POPTR DNA-directed RNA polymerase subunit beta''... 32 0.99
sp|Q14FG7|RPOC2_POPAL DNA-directed RNA polymerase subunit beta''... 32 0.99
sp|B1NWE0|RPOC2_MANES DNA-directed RNA polymerase subunit beta''... 31 1.7
sp|Q06H07|RPOC2_DRIGR DNA-directed RNA polymerase subunit beta''... 31 2.2
sp|Q87DY3|ISPF_XYLFT 2-C-methyl-D-erythritol 2,4-cyclodiphosphat... 31 2.2
sp|Q9PDT5|ISPF_XYLFA 2-C-methyl-D-erythritol 2,4-cyclodiphosphat... 31 2.2
sp|A6MMB2|RPOC2_CHLSC DNA-directed RNA polymerase subunit beta''... 30 2.9
sp|Q09G56|RPOC2_PLAOC DNA-directed RNA polymerase subunit beta''... 30 3.8
sp|Q7YJY0|RPOC2_CALFG DNA-directed RNA polymerase subunit beta''... 30 3.8
sp|P36062|AVT3_YEAST Vacuolar amino acid transporter 3 OS=Saccha... 30 3.8
sp|A8SE78|RPOC2_CERDE DNA-directed RNA polymerase subunit beta''... 30 4.9
sp|Q926Q4|RNPA_LISIN Ribonuclease P protein component OS=Listeri... 30 4.9
sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus... 30 4.9
sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 OS=Homo sapiens GN... 29 6.4
sp|Q9C0D7|ZC12C_HUMAN Zinc finger CCCH domain-containing protein... 29 6.4
sp|P12227|RPOC2_PEA DNA-directed RNA polymerase subunit beta'' (... 29 6.4
sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA polymerase subunit beta''... 29 6.4
sp|Q9P6U7|PSB2_NEUCR Probable proteasome subunit beta type-2 OS=... 29 6.4
sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae GN=PNS1 PE=... 29 6.4
sp|Q0G9M9|RPOC2_LIRTU DNA-directed RNA polymerase subunit beta''... 29 8.4

>sp|A0ZZ25|RPOC2_GOSBA DNA-directed RNA polymerase subunit beta''
OS=Gossypium barbadense GN=rpoC2 PE=3 SV=1
Length = 1391

Score = 33.9 bits (76), Expect = 0.26
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H Y YSN HL K + S + F S+VP S H
Sbjct: 443 DSEGEMHWSTDVYHSPEYTYSNVHLLPKTSHLWILSGGSYKF-------SVVPFSLHKDQ 495

Query: 61 DNQSESVFEPHKAYINTHS 5
D + + YI+ S
Sbjct: 496 DQINIHYLSAERRYISRFS 514


>sp|Q2L8Z5|RPOC2_GOSHI DNA-directed RNA polymerase subunit beta''
OS=Gossypium hirsutum GN=rpoC2 PE=3 SV=1
Length = 1393

Score = 33.5 bits (75), Expect = 0.34
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H + YSN HL K + S + F S+VP S H
Sbjct: 443 DSEGEMHWSTDVYHSPEFTYSNVHLLPKTSHLWILSGGSYKF-------SVVPFSLHKDQ 495

Query: 61 DNQSESVFEPHKAYINTHS 5
D S + YI+ S
Sbjct: 496 DQISIHYLSAERRYISRFS 514


>sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta''
OS=Vitis vinifera GN=rpoC2 PE=3 SV=1
Length = 1394

Score = 32.0 bits (71), Expect = 0.99
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H + Y N HL K + S + F S+VP S H
Sbjct: 447 DSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGGSCRF-------SIVPFSIHKDQ 499

Query: 61 DNQSESVFEPHKAYINTHS 5
D S + YI+ S
Sbjct: 500 DQMSVRSLSVERRYISNPS 518


>sp|A4GYP8|RPOC2_POPTR DNA-directed RNA polymerase subunit beta''
OS=Populus trichocarpa GN=rpoC2 PE=3 SV=1
Length = 1390

Score = 32.0 bits (71), Expect = 0.99
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H S + YSN HL K + S + +S+VP S H
Sbjct: 443 DSEGEMHWSTDVYHASEFTYSNVHLLPKTSHLWILSGGSCR-------SSIVPFSLHKDQ 495

Query: 61 DNQSESVFEPHKAYINTHS 5
D + + YI+ S
Sbjct: 496 DQINVHSLSVERGYISNPS 514


>sp|Q14FG7|RPOC2_POPAL DNA-directed RNA polymerase subunit beta''
OS=Populus alba GN=rpoC2 PE=3 SV=1
Length = 1390

Score = 32.0 bits (71), Expect = 0.99
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H S + YSN HL K + S + +S+VP S H
Sbjct: 443 DSEGEMHWSTDVYHASEFTYSNVHLLPKTSHLWILSGGSCR-------SSIVPFSLHKDQ 495

Query: 61 DNQSESVFEPHKAYINTHS 5
D + + YI+ S
Sbjct: 496 DQINVHSLSVERGYISNPS 514


>sp|B1NWE0|RPOC2_MANES DNA-directed RNA polymerase subunit beta''
OS=Manihot esculenta GN=rpoC2 PE=3 SV=1
Length = 1393

Score = 31.2 bits (69), Expect = 1.7
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H + YSN HL K + S ++ +S+VP S H
Sbjct: 447 DSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGSSCR-------SSIVPFSLHKDQ 499

Query: 61 DNQSESVFEPHKAYINTHS 5
D + + YI++ S
Sbjct: 500 DQMNVHSLSVKRRYISSPS 518


>sp|Q06H07|RPOC2_DRIGR DNA-directed RNA polymerase subunit beta''
OS=Drimys granadensis GN=rpoC2 PE=3 SV=1
Length = 1381

Score = 30.8 bits (68), Expect = 2.2
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H Y Y N HL K + S R +SLVP S H
Sbjct: 448 DSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGPRR-------SSLVPFSLHKDQ 500

Query: 61 DNQS 50
D +
Sbjct: 501 DQMN 504


>sp|Q87DY3|ISPF_XYLFT 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC
700964) GN=ispF PE=3 SV=1
Length = 176

Score = 30.8 bits (68), Expect = 2.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2

Query: 309 NCCKTIICQMPVIYKPVNCQRPVIARLEQVKPQISYITADT 187
N T IC+ P I VN R IARL +V+P+ + A T
Sbjct: 107 NVDATAICESPKIAPYVNAMREGIARLLEVQPECVSVKATT 147


>sp|Q9PDT5|ISPF_XYLFA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase OS=Xylella fastidiosa GN=ispF PE=3 SV=1
Length = 176

Score = 30.8 bits (68), Expect = 2.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2

Query: 309 NCCKTIICQMPVIYKPVNCQRPVIARLEQVKPQISYITADT 187
N T IC+ P I VN R IARL +V+P+ + A T
Sbjct: 107 NVDATAICESPKIAPYVNAMREGIARLLEVQPECVSVKATT 147


>sp|A6MMB2|RPOC2_CHLSC DNA-directed RNA polymerase subunit beta''
OS=Chloranthus spicatus GN=rpoC2 PE=3 SV=1
Length = 1389

Score = 30.4 bits (67), Expect = 2.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTK 158
DS+ +TD+ H S Y Y N HL K
Sbjct: 442 DSEGEMHWSTDVYHASEYTYGNVHLLPK 469


tr_hit_id A6L9K3
Definition tr|A6L9K3|A6L9K3_PARD8 Anthranilate synthase component I OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
Align length 39
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915954|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_A01.
(337 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6L9K3|A6L9K3_PARD8 Anthranilate synthase component I OS=Para... 35 1.9
tr|B4PUD6|B4PUD6_DROYA GE10741 OS=Drosophila yakuba GN=GE10741 P... 34 3.2
tr|O82318|O82318_ARATH Putative receptor-like protein kinase OS=... 33 5.5
tr|Q117R0|Q117R0_TRIEI TPR repeat OS=Trichodesmium erythraeum (s... 33 7.2
tr|A9XW92|A9XW92_9ROSI DNA-directed RNA polymerase (Fragment) OS... 33 7.2
tr|A9XW99|A9XW99_9ROSI DNA-directed RNA polymerase (Fragment) OS... 33 9.3
tr|A9XW46|A9XW46_9ROSI DNA-directed RNA polymerase (Fragment) OS... 33 9.3
tr|A1XK18|A1XK18_9MAGN RNA polymerase beta chain (Fragment) OS=S... 33 9.3

>tr|A6L9K3|A6L9K3_PARD8 Anthranilate synthase component I
OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=BDI_0591 PE=4 SV=1
Length = 467

Score = 35.0 bits (79), Expect = 1.9
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1

Query: 214 TDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNI 98
TDI HH+R AY F ++G+L +++ R F+ R N+
Sbjct: 388 TDIEHHNRGAYGGCIGFIGLDGDLNQAITIRTFVSRGNV 426


>tr|B4PUD6|B4PUD6_DROYA GE10741 OS=Drosophila yakuba GN=GE10741 PE=4
SV=1
Length = 1524

Score = 34.3 bits (77), Expect = 3.2
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1

Query: 178 NAHLFTKM--NGELEESMNARNFLRRQNITSLVPISRHDYADNQSESVFEPHKAYINTHS 5
N H+ K+ N E+ S+NA+N L N+ P+S Y D S+ P+ Y NT+S
Sbjct: 570 NRHMKQKLPDNFEIRNSLNAQNDL---NLDYFKPVSSQKYLDFGSKQKINPYLTYPNTNS 626


>tr|O82318|O82318_ARATH Putative receptor-like protein kinase
OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
Length = 960

Score = 33.5 bits (75), Expect = 5.5
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = -1

Query: 274 HLQTCKLSKTCDSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNI 98
HL T K S + + +G ++ +RY+YSN H+ T ++ ++ S++ R + N+
Sbjct: 860 HLLTGKCSSS-NEDIESGVNGSLVKWARYSYSNCHIDTWIDSSIDTSVHQREIVHVMNL 917


>tr|Q117R0|Q117R0_TRIEI TPR repeat OS=Trichodesmium erythraeum
(strain IMS101) GN=Tery_0856 PE=4 SV=1
Length = 213

Score = 33.1 bits (74), Expect = 7.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1

Query: 259 KLSKTCDSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARN 119
K K C+ R G DI H AY A + K L++S+N+ N
Sbjct: 117 KAVKACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLNSDN 163


>tr|A9XW92|A9XW92_9ROSI DNA-directed RNA polymerase (Fragment)
OS=Leonia glycycarpa GN=rpoC2 PE=3 SV=1
Length = 1274

Score = 33.1 bits (74), Expect = 7.2
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H + YSN HL K + S + +S++P+S H
Sbjct: 414 DSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCR-------SSIIPLSLHKDQ 466

Query: 61 DNQSESVFEPHKAYINTHS 5
D + K+YI++ S
Sbjct: 467 DQMNIHSLSVEKSYISSPS 485


>tr|A9XW99|A9XW99_9ROSI DNA-directed RNA polymerase (Fragment)
OS=Neurada procumbens GN=rpoC2 PE=3 SV=1
Length = 1265

Score = 32.7 bits (73), Expect = 9.3
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H + YSN HL K + S + F S+VP S H
Sbjct: 413 DSEGEMHWSTDVYHSPEFTYSNVHLLPKTSHLWILSGGSCKF-------SIVPFSLHKDQ 465

Query: 61 DNQSESVFEPHKAYINTHS 5
D + + + YI++ S
Sbjct: 466 DQLNINSLSVERRYISSLS 484


>tr|A9XW46|A9XW46_9ROSI DNA-directed RNA polymerase (Fragment)
OS=Aphloia theiformis GN=rpoC2 PE=3 SV=1
Length = 1273

Score = 32.7 bits (73), Expect = 9.3
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
DS+ +TD+ H ++AYSN HL K + S + +S VP S H
Sbjct: 412 DSEGEMHWSTDVYHAPKFAYSNVHLLPKTSHLWILSGGSCR-------SSAVPFSPHKDQ 464

Query: 61 DNQSESVFEPHKAYINTHS 5
D S + YI++ S
Sbjct: 465 DQMSIHSISVERRYISSLS 483


>tr|A1XK18|A1XK18_9MAGN RNA polymerase beta chain (Fragment)
OS=Sargentodoxa cuneata GN=rpoC2 PE=4 SV=1
Length = 861

Score = 32.7 bits (73), Expect = 9.3
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -1

Query: 217 TTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYADNQSESVF 38
+TD+ H + Y Y N HL K + S N +S+VP H D + +
Sbjct: 6 STDVYHATEYTYGNVHLLPKTSHLWILSGNPYR-------SSIVPFLLHKDQDQMNVNSL 58

Query: 37 EPHKAYINTHS 5
P + YI+ S
Sbjct: 59 SPERRYISNPS 69