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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915943
Clone id YMU001_000079_G09
Library
Length 414
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATTGGTGGAGCAAATGTGATTACACGATCATGTGAGCCCAGATGCCACACAACCCAAAA
ATTTGAGCAAATTTCATCATGCATCTCTAATGCAGCACAAAAGGAGCATCTTTAAGCCAC
CCACTTCATCGGAGACCCTAACAGCATGTGAGGTTGCCTGATTCACTTTCTCGACTGTCA
AATGCTTGCTGTCTGGAAAAACCACGTCCAAAGAAAGGTTTCAAAACTGTAGCACATGGT
TGCAGAGAGATTCCAGACGCAAGTTCAAGAACAAAGCTTCATGCCATCCTTTCTAGTAAA
AAATTTGCACAGTCAATAACTTGGCTTGCTGACTGAGCTTTACCTTGCCATACCATGTTG
GTCCTTGCTCATAATTCCAGTAGTTAAAGAAGCTGACTCAGCACAGTTTCCAAC
■■Homology search results ■■ -
sp_hit_id A1EC95
Definition sp|A1EC95|HEAT6_RAT HEAT repeat-containing protein 6 OS=Rattus norvegicus
Align length 34
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915943|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_G09.
         (414 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1EC95|HEAT6_RAT HEAT repeat-containing protein 6 OS=Rattus n...    31   1.7  
sp|Q5R5R2|HEAT6_PONAB HEAT repeat-containing protein 6 OS=Pongo ...    31   1.7  
sp|Q6AI08|HEAT6_HUMAN HEAT repeat-containing protein 6 OS=Homo s...    31   1.7  
sp|Q19196|DPOE2_CAEEL Probable DNA polymerase epsilon subunit 2 ...    31   2.2  
sp|P17149|UL70_HCMVA Probable primase OS=Human cytomegalovirus (...    29   8.4  

>sp|A1EC95|HEAT6_RAT HEAT repeat-containing protein 6 OS=Rattus
           norvegicus GN=Heatr6 PE=2 SV=1
          Length = 1252

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 176 CQMLAVWKNHVQRKVSKL*HMVAERFQTQVQEQS 277
           CQ++ + +NH+  KVS+L H +  R Q  V EQ+
Sbjct: 154 CQLVPLNQNHLVSKVSQLIHRLLNRLQVIVDEQN 187


>sp|Q5R5R2|HEAT6_PONAB HEAT repeat-containing protein 6 OS=Pongo
           abelii GN=HEATR6 PE=2 SV=1
          Length = 1181

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 176 CQMLAVWKNHVQRKVSKL*HMVAERFQTQVQEQ--SFMPSFLVKNLH 310
           C+++ + +NH+  KVS+L H +  R Q  V EQ   F+ ++ +  +H
Sbjct: 83  CRLVPLNQNHLVSKVSQLIHHLLNRLQVIVDEQRLDFLLAYTISAIH 129


>sp|Q6AI08|HEAT6_HUMAN HEAT repeat-containing protein 6 OS=Homo
           sapiens GN=HEATR6 PE=1 SV=1
          Length = 1181

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 176 CQMLAVWKNHVQRKVSKL*HMVAERFQTQVQEQ--SFMPSFLVKNLH 310
           C+++ + +NH+  KVS+L H +  R Q  V EQ   F+ ++ +  +H
Sbjct: 83  CRLVPLNQNHLVSKVSQLIHHLLNRLQVIVDEQHLDFLLAYTISAIH 129


>sp|Q19196|DPOE2_CAEEL Probable DNA polymerase epsilon subunit 2
           OS=Caenorhabditis elegans GN=F08B4.5 PE=2 SV=2
          Length = 534

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +3

Query: 57  KNLSKFHHASLMQHKRSIFKPPTSSETLTACEVA*FTFSTVKCLLSGKTTSKERFQNCST 236
           K  +KFHHA   +H  +IF+    +  LT  EVA      +  + S + T KE   N   
Sbjct: 196 KEDTKFHHALFHEHSIAIFEGTFENSVLTVNEVA------MVPVESAEVTRKELSSN-EN 248

Query: 237 WLQRDSRRKFK 269
           W   D +  F+
Sbjct: 249 WFGGDDKIAFR 259


>sp|P17149|UL70_HCMVA Probable primase OS=Human cytomegalovirus
           (strain AD169) GN=UL70 PE=3 SV=2
          Length = 946

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 57  KNLSKFHHASLMQHKRSIFKPPTS 128
           K+L  FHHA++++H   +F  PTS
Sbjct: 119 KHLVYFHHAAVLRHLNQVFLCPTS 142
tr_hit_id B6K9W5
Definition tr|B6K9W5|B6K9W5_TOXGO Helicase, putative OS=Toxoplasma gondii ME49
Align length 38
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915943|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_G09.
         (414 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6K9W5|B6K9W5_TOXGO Helicase, putative OS=Toxoplasma gondii M...    33   9.2  

>tr|B6K9W5|B6K9W5_TOXGO Helicase, putative OS=Toxoplasma gondii ME49
           GN=TGME49_116750 PE=4 SV=1
          Length = 741

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 154 LPDSLSRLSNACCLEKPRPKKGFKTVAHGCREIPDASS 267
           LP    RLSN  C+  P  + G +  +H CRE P   S
Sbjct: 243 LPTPAGRLSNCRCMRSPTRRVGLRLRSHICREEPRGES 280