BP915917 |
Clone id |
YMU001_000079_E01 |
Library |
YMU01 |
Length |
288 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000079_E01. |
Accession |
BP915917 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGTTTCGTGCTCTGTGGTCCGTGCGAGATCTCGGCATGGATTTGGTGTGTGGAAAACGCT ACTCCGTGGTGGGAATGACCCGTCTCATGGGTTGGGGTTTAACCTCCCTTCTGGCCCGTT TGTTCACGGCAGGTGCTGATGCTCTTTGTGGACAGGCTGATGGTGCTACGCTCCCCATAA AAGCCTGGGTTCGGATCTTCAGTTCGTCTCTCTGATGCGAGGTGATGGAGCTTGCATGAT CCCCCCTTATGTGATTGCTACTGGTATGTGTGTAAACCCTTTTTTGTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5ZMJ9 |
Definition |
sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1 OS=Gallus gallus |
Align length |
62 |
Score (bit) |
31.2 |
E-value |
1.7 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915917|Adiantum capillus-veneris mRNA, clone: YMU001_000079_E01. (288 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein ... 31 1.7 sp|Q68DN1|CB016_HUMAN Uncharacterized protein C2orf16 OS=Homo sa... 31 2.2 sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus ... 30 4.8 sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein ... 30 4.8 sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein ... 30 4.8 sp|Q4R834|SIRT2_MACFA NAD-dependent deacetylase sirtuin-2 OS=Mac... 29 6.3 sp|A1U7J3|MNME_MARAV tRNA modification GTPase mnmE OS=Marinobact... 29 6.3 sp|Q6DE84|MAFB_XENLA Transcription factor MafB OS=Xenopus laevis... 26 7.8 sp|P23246|SFPQ_HUMAN Splicing factor, proline- and glutamine-ric... 29 8.2 sp|P36625|REC7_SCHPO Meiotic recombination protein rec7 OS=Schiz... 29 8.3 sp|Q9Y613|FHOD1_HUMAN FH1/FH2 domain-containing protein 1 OS=Hom... 29 8.3 sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l... 25 9.9
>sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1 Length = 888
Score = 31.2 bits (69), Expect = 1.7 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = -3
Query: 172 SVAPSACPQRASAPAVNKRARREVKPQPMRRVIPTTE*RFP-----HTKSMPRSRTDHRA 8 + +P P+R ++P+ + R P P +R P + R P H K P SR++ Sbjct: 607 TASPPPPPKRRASPSPQSKRRVSHSPPPKQRSSPAAKRRSPSISSKHRKGSPPSRSNRET 666
Query: 7 RN 2 R+ Sbjct: 667 RS 668
>sp|Q68DN1|CB016_HUMAN Uncharacterized protein C2orf16 OS=Homo sapiens GN=C2orf16 PE=1 SV=2 Length = 1984
Score = 30.8 bits (68), Expect = 2.2 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -2
Query: 287 TKKGLHTYQ*QSHKGGSCKLHHLASERRTEDPN 189 +++GLH+ +SH+G S + HH SER P+ Sbjct: 1626 SERGLHSPSQRSHRGPSQRRHHSPSERSHRSPS 1658
>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus radiodurans GN=tilS PE=3 SV=2 Length = 582
Score = 29.6 bits (65), Expect = 4.8 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +1
Query: 82 VSWVGV*PPFWPVCSRQVLMLFVDRL 159 V WVGV PP W V +R+ L L D L Sbjct: 379 VQWVGVQPPLWAVGARESLGLPADPL 404
>sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein 1 OS=Pongo abelii GN=SRRM1 PE=2 SV=1 Length = 917
Score = 29.6 bits (65), Expect = 4.8 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = -3
Query: 172 SVAPSACPQRASAPAVNKRARREVKPQPMRRVIPTTE*RFP-----HTKSMPRSRTDHRA 8 + +P P+R ++P+ + R P P +R P T+ R P H K SR+ A Sbjct: 628 TASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREA 687
Query: 7 RN 2 R+ Sbjct: 688 RS 689
>sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2 Length = 904
Score = 29.6 bits (65), Expect = 4.8 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = -3
Query: 172 SVAPSACPQRASAPAVNKRARREVKPQPMRRVIPTTE*RFP-----HTKSMPRSRTDHRA 8 + +P P+R ++P+ + R P P +R P T+ R P H K SR+ A Sbjct: 614 TASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREA 673
Query: 7 RN 2 R+ Sbjct: 674 RS 675
>sp|Q4R834|SIRT2_MACFA NAD-dependent deacetylase sirtuin-2 OS=Macaca fascicularis GN=SIRT2 PE=2 SV=1 Length = 389
Score = 29.3 bits (64), Expect = 6.3 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = -1
Query: 153 VHKEHQHLP*TNGPEGRLNPNP*DGSFPPRSSVFHTPNPCRDLARTTEHE 4 V +EH + +G E PNP + P +S P P +D ARTTE E Sbjct: 345 VRREHASIDAQSGAEA---PNPSTSASPRKS-----PPPAQDEARTTERE 386
>sp|A1U7J3|MNME_MARAV tRNA modification GTPase mnmE OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=mnmE PE=3 SV=1 Length = 456
Score = 29.3 bits (64), Expect = 6.3 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +3
Query: 72 GMTRLMGWGLTSLLARLFTAGADALCGQADGATLPIKAWVRIFSS 206 G T+L G+G LLA A DAL G+ G P + +IFSS Sbjct: 408 GQTQLEGYGAGELLAEDLRAAQDAL-GEITGHLTPDELLGKIFSS 451
>sp|Q6DE84|MAFB_XENLA Transcription factor MafB OS=Xenopus laevis GN=mafb PE=2 SV=1 Length = 313
Score = 25.8 bits (55), Expect(2) = 7.8 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = -1
Query: 174 GA*HHQPVHKEHQHLP*TNGPEG 106 G HH P H +HQH + P G Sbjct: 152 GLPHHHPHHHQHQHHQTSPSPSG 174
Score = 21.9 bits (45), Expect(2) = 7.8 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = -2
Query: 89 HETGHSHHGVAFSTHQIHAEISHGPQS 9 H+T S G + S+ Q+H + H S Sbjct: 166 HQTSPSPSGSSSSSQQLHHQQQHSSSS 192
>sp|P23246|SFPQ_HUMAN Splicing factor, proline- and glutamine-rich OS=Homo sapiens GN=SFPQ PE=1 SV=2 Length = 707
Score = 28.9 bits (63), Expect = 8.2 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -1
Query: 192 EPRLLWGA*HHQPVHKEHQHLP*TNGPEGR 103 EPR G HH P H++H P GP GR Sbjct: 240 EPR--GGRQHHPPYHQQHHQGPPPGGPGGR 267
>sp|P36625|REC7_SCHPO Meiotic recombination protein rec7 OS=Schizosaccharomyces pombe GN=rec7 PE=2 SV=2 Length = 339
Score = 28.9 bits (63), Expect = 8.3 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 8/90 (8%) Frame = -3
Query: 262 SSNHIRGDHASSITSHQRDELKIRTQAFMGSVA--------PSACPQRASAPAVNKRARR 107 SS+ + + S S+ EL + A+ S A PS P +A + Sbjct: 123 SSSEKKQFNNSQSQSNNSQELSLMNNAYNKSSAQQPNLLLQPSYIPMTQTATTAVNNSTN 182
Query: 106 EVKPQPMRRVIPTTE*RFPHTKSMPRSRTD 17 V P P++ V+P E F +T + R R D Sbjct: 183 YVNPAPLQHVMPNAE-IFSNTPPLKRFRGD 211
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2HIE2 |
Definition |
tr|Q2HIE2|Q2HIE2_CHAGB Putative uncharacterized protein OS=Chaetomium globosum |
Align length |
25 |
Score (bit) |
38.1 |
E-value |
0.22 |
Report |
|