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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915909
Clone id YMU001_000079_D04
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGAATGACATTCAAGCTTCTTGAGCGGCCTGTGGCCAATGCTGCAGCCATTTCAGCTGC
AGCTTCAGCAGATTCCCATTCAGCTTCTGCAATCTCAGCTACCCTGGCAGCTTCCTCAGC
TGCTGCTGCAGCTACCTCTGCATCAGCCACTGCTTGCGCAGCTATCATAGCTACCTCATT
GGCAGCCATGTTTTGGAATTTCACAGCCATCTCTTCACTTGCTTGACAATCCAAGTGTGC
TCTCTTTTTAACAGCACCTCCTTGGACACCTTGCTGTTTATGACTTTCGTCCAGCAGGCC
AAGATCCCGTGTCATGCTATAATGTCGCCTCATCTTAATAAGCTTTCCCTGCTGTATTAA
AAGCTTAAGCTTTGCCGCAAGCAGTCTTCTGAAGTTGGATGGAACAGGATAATGACTCTC
TAAATAGCTTGCAATCCGTCCCTTACTGCCTCCGTTTGTATCTTGAAGGTTCAAAATTGC
TTCTAAGATCAAATGATCAAATCTGGC
■■Homology search results ■■ -
sp_hit_id Q6L6Q6
Definition sp|Q6L6Q6|LYS_CRAGI Lysozyme OS=Crassostrea gigas
Align length 29
Score (bit) 30.4
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915909|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_D04.
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6L6Q6|LYS_CRAGI Lysozyme OS=Crassostrea gigas GN=lysoz PE=2 ...    30   5.0  
sp|Q9UV33|H1_ASCIM Histone H1 OS=Ascobolus immersus PE=3 SV=1          30   6.6  
sp|P34551|SRX10_CAEEL Serpentine receptor class XA 10 OS=Caenorh...    30   8.6  

>sp|Q6L6Q6|LYS_CRAGI Lysozyme OS=Crassostrea gigas GN=lysoz PE=2
           SV=1
          Length = 137

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 103 PG-SFLSCCCSYLCISHCLRSYHSYLIGS 186
           PG SF +C   Y C S+C+R+Y    IGS
Sbjct: 67  PGTSFKACANDYTCASNCVRAYMKRYIGS 95


>sp|Q9UV33|H1_ASCIM Histone H1 OS=Ascobolus immersus PE=3 SV=1
          Length = 213

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 501 FDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNF 391
           +  ++ +AI  L++ NG S+  I  +++S++ V  NF
Sbjct: 30  YKEMLTKAITELKERNGSSRQAIKKFIQSNFKVKDNF 66


>sp|P34551|SRX10_CAEEL Serpentine receptor class XA 10
           OS=Caenorhabditis elegans GN=srxa-10 PE=2 SV=2
          Length = 319

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +1

Query: 175 LIGSHVLEFHSHLF--TCLTIQVC-SLFNSTSLDTLLFMTFVQQAKIPCHAIM 324
           +I + +  F+  ++  T L ++V   LF + SLD  L  T+ + A++PCH  +
Sbjct: 224 MIQAFITAFYLSVYELTSLVLRVVPELFGNLSLDGKLAFTYFRLAQVPCHVFL 276
tr_hit_id A9T749
Definition tr|A9T749|A9T749_PHYPA Single myb histone protein OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 50.4
E-value 5.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915909|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_D04.
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T749|A9T749_PHYPA Single myb histone protein OS=Physcomitre...    50   5e-05
tr|A7QL84|A7QL84_VITVI Chromosome chr3 scaffold_117, whole genom...    47   4e-04
tr|A7R475|A7R475_VITVI Chromosome undetermined scaffold_623, who...    46   0.001
tr|Q8LA70|Q8LA70_ARATH DNA-binding protein PcMYB1, putative OS=A...    45   0.003
tr|B6TMI8|B6TMI8_MAIZE Single myb histone 1 OS=Zea mays PE=2 SV=1      44   0.003
tr|Q9LPL9|Q9LPL9_ARATH F2J10.16 protein OS=Arabidopsis thaliana ...    44   0.005
tr|Q8VX39|Q8VX39_ARATH Telomere repeat binding factor 1 OS=Arabi...    44   0.005
tr|Q8VWK4|Q8VWK4_ARATH Telomere repeat binding factor 1 (MYB tra...    44   0.005
tr|Q6WS85|Q6WS85_MAIZE Single myb histone 1 (Putative uncharacte...    44   0.006
tr|B8LR63|B8LR63_PICSI Putative uncharacterized protein OS=Picea...    43   0.010
tr|Q1EMR6|Q1EMR6_PLAMJ Myb transcription factor (Fragment) OS=Pl...    42   0.022
tr|Q2LMD5|Q2LMD5_MALDO MYBR6 OS=Malus domestica PE=2 SV=1              41   0.029
tr|Q9LNQ2|Q9LNQ2_ARATH F1L3.23 OS=Arabidopsis thaliana PE=4 SV=1       41   0.038
tr|Q8S270|Q8S270_ORYSJ Putative single myb histone 6 (Putative u...    41   0.038
tr|Q8GWZ5|Q8GWZ5_ARATH Putative myb-related DNA-binding protein ...    41   0.038
tr|Q5NKH9|Q5NKH9_ORYSJ MYB19 protein (Fragment) OS=Oryza sativa ...    41   0.038
tr|Q0JLM2|Q0JLM2_ORYSJ Os01g0589300 protein OS=Oryza sativa subs...    41   0.038
tr|A2WRZ9|A2WRZ9_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.038
tr|Q6WLH3|Q6WLH3_MAIZE Single myb histone 5 (Putative uncharacte...    39   0.15 
tr|B6TCK5|B6TCK5_MAIZE Single myb histone 6 OS=Zea mays PE=2 SV=1      39   0.15 
tr|A7PE46|A7PE46_VITVI Chromosome chr11 scaffold_13, whole genom...    39   0.15 
tr|Q6WLH1|Q6WLH1_MAIZE Single myb histone 6 OS=Zea mays GN=Smh6 ...    39   0.19 
tr|Q67YM4|Q67YM4_ARATH Putative uncharacterized protein At1g5426...    38   0.25 
tr|B4FT40|B4FT40_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.42 
tr|Q9CAI8|Q9CAI8_ARATH Putative DNA-binding protein; 27830-29933...    37   0.72 
tr|Q761Y7|Q761Y7_ORYSJ BRI1-KD interacting protein 127 (Fragment...    36   1.2  
tr|Q2QM89|Q2QM89_ORYSJ Os12g0613300 protein OS=Oryza sativa subs...    36   1.2  
tr|B8BMZ7|B8BMZ7_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.2  
tr|A5CB69|A5CB69_VITVI Putative uncharacterized protein OS=Vitis...    36   1.2  
tr|A3CJE3|A3CJE3_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.2  

>tr|A9T749|A9T749_PHYPA Single myb histone protein OS=Physcomitrella
           patens subsp. patens GN=SMH1501 PE=4 SV=1
          Length = 345

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = -1

Query: 507 ARFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRRXXXXXXXXXXXXXXXXKMR 328
           +R+D ++ EA++ L++T G S   IASY+E  + VPSNFRR                K+R
Sbjct: 119 SRYDDMVFEAVMGLKETYGSSNASIASYIEERHAVPSNFRRLLTTKLKELALAGKLVKVR 178

Query: 327 RHYSM 313
           ++Y M
Sbjct: 179 QNYKM 183


>tr|A7QL84|A7QL84_VITVI Chromosome chr3 scaffold_117, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001485001
           PE=4 SV=1
          Length = 307

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = -1

Query: 507 ARFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRR 385
           +R D+LILEAI NL++  G +K  IA+Y+E  Y  P NF+R
Sbjct: 122 SRLDNLILEAITNLKEPGGSNKTTIATYIEDQYRAPPNFKR 162


>tr|A7R475|A7R475_VITVI Chromosome undetermined scaffold_623, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004199001 PE=4 SV=1
          Length = 295

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -1

Query: 504 RFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRR 385
           R D  ILEAI NL+D +G +K  IA Y+E HY  P NF++
Sbjct: 122 RLDSHILEAITNLKDPSGSNKTAIAMYIEEHYLAPPNFKK 161


>tr|Q8LA70|Q8LA70_ARATH DNA-binding protein PcMYB1, putative
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 300

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = -1

Query: 504 RFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRRXXXXXXXXXXXXXXXXKMRR 325
           R D LI+EAI  L++  G +K  I +Y+E  Y  P +F+R                K++R
Sbjct: 120 RLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKR 179

Query: 324 HYSMTRDLGLLDESHKQQGVQGG 256
            Y +     L     K  GV GG
Sbjct: 180 KYRIPNSTSLSSHRRKGLGVFGG 202


>tr|B6TMI8|B6TMI8_MAIZE Single myb histone 1 OS=Zea mays PE=2 SV=1
          Length = 299

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = -1

Query: 507 ARFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRR 385
           AR D LILEAI  L++ +G SK  IA+Y+E  Y  P++F+R
Sbjct: 126 ARLDDLILEAIRKLKEPSGSSKAAIAAYIEDQYWPPADFQR 166


>tr|Q9LPL9|Q9LPL9_ARATH F2J10.16 protein OS=Arabidopsis thaliana
           GN=F2J10.16 PE=4 SV=1
          Length = 318

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = -1

Query: 504 RFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRRXXXXXXXXXXXXXXXXKMRR 325
           R D LI+EAI  L++  G +K  I +Y+E  Y  P +F+R                K++R
Sbjct: 120 RLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKR 179

Query: 324 HYSMTRDLGLLDESHKQQGVQGG 256
            Y +     L     K  GV GG
Sbjct: 180 KYRIPNSTPLSSHRRKGLGVFGG 202


>tr|Q8VX39|Q8VX39_ARATH Telomere repeat binding factor 1
           OS=Arabidopsis thaliana GN=TRB1 PE=2 SV=1
          Length = 300

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = -1

Query: 504 RFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRRXXXXXXXXXXXXXXXXKMRR 325
           R D LI+EAI  L++  G +K  I +Y+E  Y  P +F+R                K++R
Sbjct: 120 RLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKR 179

Query: 324 HYSMTRDLGLLDESHKQQGVQGG 256
            Y +     L     K  GV GG
Sbjct: 180 KYRIPNSTPLSSHRRKGLGVFGG 202


>tr|Q8VWK4|Q8VWK4_ARATH Telomere repeat binding factor 1 (MYB
           transcription factor) (At1g49950) (Putative
           uncharacterized protein At1g49950; F2J10.16)
           OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1
          Length = 300

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = -1

Query: 504 RFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRRXXXXXXXXXXXXXXXXKMRR 325
           R D LI+EAI  L++  G +K  I +Y+E  Y  P +F+R                K++R
Sbjct: 120 RLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKR 179

Query: 324 HYSMTRDLGLLDESHKQQGVQGG 256
            Y +     L     K  GV GG
Sbjct: 180 KYRIPNSTPLSSHRRKGLGVFGG 202


>tr|Q6WS85|Q6WS85_MAIZE Single myb histone 1 (Putative
           uncharacterized protein) OS=Zea mays GN=Smh1 PE=2 SV=1
          Length = 299

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = -1

Query: 507 ARFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRR 385
           AR D LILEAI  L++ +G SK  IA+Y+E  Y  P++F+R
Sbjct: 126 ARLDDLILEAIRKLKEPSGPSKAAIAAYIEDQYWPPADFQR 166


>tr|B8LR63|B8LR63_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 298

 Score = 42.7 bits (99), Expect = 0.010
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = -1

Query: 507 ARFDHLILEAILNLQDTNGGSKGRIASYLESHYPVPSNFRR 385
           +R D LIL+A+  L++ NG +K  IA+Y+E +   P NFRR
Sbjct: 123 SRLDKLILDAVSTLKEPNGSNKSAIATYIEENQYPPPNFRR 163