BP915885
Clone id YMU001_000079_A12
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GCAGAGCTAAGAGAAAGCACAAAGGAAGCCTTAGAATGGGAGCAGAGGGTCTTCAAATCT
ATGACCATTCAGGCGCGAGTGGCTTCAGTCCTCTCTCCCATATCCATTGGTGAAATATGA
GGCAGGAACAATAAACAAGCGAATCAGAGAAGAGCCAACTGTCCCTCTCTACAATGCAGA
CACCTCGAGGCCTTAGGGAGAGTGGCCTATACGTAGTGATTTTGGTTCATAGACCTTAGG
GAGAGTGGCCTATAGGTATTAGTAGGGTCTCCTTCAAGTTCTATGGTGTTTCGAAAGTGT
TTGATGGGTGTTCGGCTCTAACAAGCGTTGTAGGAAGTTTCCTCTTTTGCACTCTTGAAG
GCTGTGACTTAGACAATTGGTAGAGACCTCTGTAGGAATTAGTTAGGAGTCGGTCAAGTG
TAGGTTGGCACCTTATGCTTGCTTCCACGCGCCAGCGGGTCGAGCTTCGTCCTTAGCTGA
CATTACTTGTCAGGTGAGTTCTCGCTGTGCTGACGTCCGTCA
■■Homology search results ■■ -
sp_hit_id Q6MAS0
Definition sp|Q6MAS0|RL36_PARUW 50S ribosomal protein L36 OS=Protochlamydia amoebophila (strain UWE25)
Align length 40
Score (bit) 30.4
E-value 5.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915885|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A12.
(522 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6MAS0|RL36_PARUW 50S ribosomal protein L36 OS=Protochlamydia... 30 5.3

>sp|Q6MAS0|RL36_PARUW 50S ribosomal protein L36 OS=Protochlamydia
amoebophila (strain UWE25) GN=rpmJ PE=3 SV=1
Length = 45

Score = 30.4 bits (67), Expect = 5.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3

Query: 451 RVEASIRCQPTLDRLLTNSYRGLYQLSKSQPSRVQKRKLP 332
+V+ASI+ P+ +L LY ++K P+R Q++K P
Sbjct: 2 KVKASIKADPSKGDILVRRSGRLYVINKKDPNRKQRQKGP 41


tr_hit_id Q4SCG6
Definition tr|Q4SCG6|Q4SCG6_TETNG Chromosome undetermined SCAF14653, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 46
Score (bit) 34.3
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915885|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A12.
(522 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4SCG6|Q4SCG6_TETNG Chromosome undetermined SCAF14653, whole ... 34 3.8
tr|Q9XGZ7|Q9XGZ7_ARATH T1N24.19 protein OS=Arabidopsis thaliana ... 33 8.5
tr|Q1PDT4|Q1PDT4_ARATH Putative uncharacterized protein OS=Arabi... 33 8.5
tr|A0MFI0|A0MFI0_ARATH Putative uncharacterized protein (Fragmen... 33 8.5

>tr|Q4SCG6|Q4SCG6_TETNG Chromosome undetermined SCAF14653, whole
genome shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00020500001 PE=4 SV=1
Length = 2351

Score = 34.3 bits (77), Expect = 3.8
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3

Query: 246 WPIGISRVSFKFYGVSKVFDG----CSALTSVVGSFLFCTLEGCDL 371
W G+ VS + YG+ + DG C + +VGS L C +GC L
Sbjct: 2260 WTSGVYLVSGRLYGLQEALDGARETCCSYCEMVGSTLGCYSKGCTL 2305


>tr|Q9XGZ7|Q9XGZ7_ARATH T1N24.19 protein OS=Arabidopsis thaliana
GN=At5g25970 PE=4 SV=1
Length = 436

Score = 33.1 bits (74), Expect = 8.5
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3

Query: 258 ISRVSFKFYGVSKVFDGCSALTSVVGSFLFCTLEGCDLDNW*RPL*ELVRSRS 416
IS + K+YG++ V +TSV SF+ C + DLD W +PL L+ + S
Sbjct: 98 ISVSTIKYYGINSV------VTSVTSSFVPCHEKINDLDKWIKPLVVLMHNMS 144


>tr|Q1PDT4|Q1PDT4_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana GN=At5g25970 PE=2 SV=1
Length = 387

Score = 33.1 bits (74), Expect = 8.5
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3

Query: 258 ISRVSFKFYGVSKVFDGCSALTSVVGSFLFCTLEGCDLDNW*RPL*ELVRSRS 416
IS + K+YG++ V +TSV SF+ C + DLD W +PL L+ + S
Sbjct: 49 ISVSTIKYYGINSV------VTSVTSSFVPCHEKINDLDKWIKPLVVLMHNMS 95


>tr|A0MFI0|A0MFI0_ARATH Putative uncharacterized protein (Fragment)
OS=Arabidopsis thaliana PE=2 SV=1
Length = 388

Score = 33.1 bits (74), Expect = 8.5
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3

Query: 258 ISRVSFKFYGVSKVFDGCSALTSVVGSFLFCTLEGCDLDNW*RPL*ELVRSRS 416
IS + K+YG++ V +TSV SF+ C + DLD W +PL L+ + S
Sbjct: 49 ISVSTIKYYGINSV------VTSVTSSFVPCHEKINDLDKWIKPLVVLMHNMS 95