BP915702
Clone id YMU001_000074_G08
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CGGCCGCAATTTCATTCCAAACAGAGTCTTCAACATTCAGCACAGTATGGTGTGAACCCT
TTTCAGCTTCCTTGCTTACGGGTAGATCACAAACACCATAGGGCTCTTCCAGAGTCCTAC
TATCATTACTTGAAAGGCCTTCACTGGAAACTTCTCCACCACTACTAAAACTTTCACACC
CTCCGATACTGGAACCACTTTGACAGAGATTTGCAGCAGACTGTTTTTCCCTTGAGTAGG
GCATAAGCACCATAAAATCGCCACCTTGCATAGAAAGAGACTCTATTGACTTGCTAACAC
CAAGCTTTATTCCCCGGAGGAAGAGATGGAAAGGAAGAGTTGGAGCGCATAGCAAGCTCT
GTTGGTGCAAAAGTCTCTTGAGGCTGCCCACAGTCTCGTCTCCCTTCACCTGCACTTTTG
TACTGCGCCCGTCTAGAGTACGGATTTCTACCTC
■■Homology search results ■■ -
sp_hit_id Q04836
Definition sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
Align length 44
Score (bit) 33.1
E-value 0.57
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915702|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_G08.
(454 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 33 0.57
sp|Q76NI1|VKIND_HUMAN Protein very KIND OS=Homo sapiens GN=KNDC1... 33 0.74
sp|Q6DFR5|MYADM_XENTR Myeloid-associated differentiation marker ... 30 3.7
sp|Q63ZU3|MYADM_XENLA Myeloid-associated differentiation marker ... 30 3.7
sp|O69064|HTXE_PSEST Putative phosphite transport system permeas... 30 4.8
sp|Q7ZW34|CNTN5_DANRE Contactin-5 OS=Danio rerio GN=cntn5 PE=2 SV=1 30 4.8
sp|P20908|CO5A1_HUMAN Collagen alpha-1(V) chain OS=Homo sapiens ... 30 6.3
sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=I... 29 8.2
sp|P25066|P43_XENBO P43 5S RNA-binding protein OS=Xenopus boreal... 29 8.4

>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic
OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1
Length = 329

Score = 33.1 bits (74), Expect = 0.57
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +3

Query: 27 SSTFSTVWCEPFSASLLTGRSQTP*GSSRVLLSLLERPSLETSP 158
SST S+ S SLLTGR P SRV LSL + L+ SP
Sbjct: 30 SSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSP 73


>sp|Q76NI1|VKIND_HUMAN Protein very KIND OS=Homo sapiens GN=KNDC1 PE=2
SV=2
Length = 1749

Score = 32.7 bits (73), Expect = 0.74
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -3

Query: 449 RNPYSRRAQYKSAGEGRRDCGQPQETFAPTELAMRSNSSFPSLPPG-------NKAWC 297
R+ + RAQ AGE RR G + A T LA RS P+L PG + WC
Sbjct: 1038 RSVKAERAQQPEAGEDRRPAGGASDVEAVTRLA-RSKGVGPALSPGPAGFQSCSPGWC 1094


>sp|Q6DFR5|MYADM_XENTR Myeloid-associated differentiation marker
homolog OS=Xenopus tropicalis GN=myadm PE=2 SV=1
Length = 307

Score = 30.4 bits (67), Expect = 3.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3

Query: 246 STIKSPPCIERDS---IDLLTPSFIPRRKRWKGRVGAHSKLCWC 368
ST+KSP I R +T S + RW GR+G CWC
Sbjct: 14 STLKSPVGIVRILEVIFACVTFSLVVHTGRWGGRIGDLCMFCWC 57


>sp|Q63ZU3|MYADM_XENLA Myeloid-associated differentiation marker
homolog OS=Xenopus laevis GN=myadm PE=2 SV=1
Length = 307

Score = 30.4 bits (67), Expect = 3.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3

Query: 246 STIKSPPCIERDS---IDLLTPSFIPRRKRWKGRVGAHSKLCWC 368
ST+KSP I R +T S + RW GR+G CWC
Sbjct: 14 STLKSPVGILRILEVIFACVTFSLVVHTGRWTGRIGDLCMFCWC 57


>sp|O69064|HTXE_PSEST Putative phosphite transport system permease
protein htxE OS=Pseudomonas stutzeri GN=htxE PE=3 SV=1
Length = 261

Score = 30.0 bits (66), Expect = 4.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3

Query: 306 FIPRRKRWKGRVGAHSKLCWCKSLLRL--PTVSSPFTCTF 419
FI + W+ R GA S CWC+ R+ P +SP T+
Sbjct: 67 FIKMIETWRLRCGARSCRCWCRFPWRISRPATTSPNRFTY 106


>sp|Q7ZW34|CNTN5_DANRE Contactin-5 OS=Danio rerio GN=cntn5 PE=2 SV=1
Length = 1056

Score = 30.0 bits (66), Expect = 4.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3

Query: 425 QYKSAGEGRRDCGQPQETFAPTELAMRSNSSFPSLPPGNKAWC*QVNRVS 276
QY + +G GQ + T + + + + PSLPPGN W + N VS
Sbjct: 901 QYLVSVKGFNSAGQGPSS---TAVKISTKKNAPSLPPGNLMWIQEGNNVS 947


>sp|P20908|CO5A1_HUMAN Collagen alpha-1(V) chain OS=Homo sapiens
GN=COL5A1 PE=1 SV=3
Length = 1838

Score = 29.6 bits (65), Expect = 6.3
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -3

Query: 410 GEGRRDCGQPQETFA----PTELAMRSNSSFPSLPPGNKA 303
GEG + QP + A PT A SNSS P+ PPG A
Sbjct: 358 GEGEENPDQPTDPGAGAEIPTSTADTSNSSNPAPPPGEGA 397


>sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus
GN=ITGA3 PE=1 SV=2
Length = 1066

Score = 29.3 bits (64), Expect = 8.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3

Query: 365 PTELAMRSNSSFPSLPPGN 309
PTE+ + SN S+P PPGN
Sbjct: 833 PTEIIIHSNESWPCQPPGN 851


>sp|P25066|P43_XENBO P43 5S RNA-binding protein OS=Xenopus borealis
PE=2 SV=1
Length = 365

Score = 29.3 bits (64), Expect = 8.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1

Query: 31 QHSAQYGVNPFQLPCLRVDHKHHRALPESYYHYLKGLHWKLLHH 162
+H A + NP QLPC R D + + H+L+ +H L H
Sbjct: 208 RHKATHAKNPLQLPCPRQDCDKIFSTVFNLTHHLRKVHLCLQTH 251


tr_hit_id Q69J41
Definition tr|Q69J41|Q69J41_ORYSJ ATP-dependent RNA helicase-like protein OS=Oryza sativa subsp. japonica
Align length 81
Score (bit) 58.2
E-value 2.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915702|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_G08.
(454 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q69J41|Q69J41_ORYSJ ATP-dependent RNA helicase-like protein O... 58 2e-07
tr|B8B8B6|B8B8B6_ORYSI Putative uncharacterized protein OS=Oryza... 58 2e-07
tr|A3BM05|A3BM05_ORYSJ Putative uncharacterized protein OS=Oryza... 58 2e-07
tr|Q9LEZ5|Q9LEZ5_ARATH Putative uncharacterized protein T22D6_50... 51 3e-05
tr|Q6Z8Y2|Q6Z8Y2_ORYSJ Os02g0111900 protein OS=Oryza sativa subs... 42 0.020
tr|A2X011|A2X011_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.020
tr|B2ID71|B2ID71_BEII9 Putative uncharacterized protein OS=Beije... 37 0.38
tr|Q59H12|Q59H12_HUMAN Chordin isoform a variant (Fragment) OS=H... 33 5.5
tr|Q0CBR2|Q0CBR2_ASPTN Predicted protein OS=Aspergillus terreus ... 33 5.5
tr|Q05AX1|Q05AX1_XENLA Fn3k protein OS=Xenopus laevis GN=fn3k PE... 33 7.1
tr|Q94EH5|Q94EH5_ARATH AT4g24770/F22K18_30 OS=Arabidopsis thalia... 33 7.1
tr|Q8NF24|Q8NF24_HUMAN FLJ00378 protein (Fragment) OS=Homo sapie... 33 9.3

>tr|Q69J41|Q69J41_ORYSJ ATP-dependent RNA helicase-like protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0072I06.9 PE=4
SV=1
Length = 548

Score = 58.2 bits (139), Expect = 2e-07
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = -1

Query: 454 EVEIRTLDGRSTKVQVKGDETVGSLKRLLHQQSLLCAPTLPFHLFLRGIKLGVSKSIESL 275
E+ +R LDGRST V + +V LK L + FHLFL+G KL V I +L
Sbjct: 7 ELHVRALDGRSTVVALAAAASVRDLKAALRSSFPPAQVSPSFHLFLKGTKLRVEAEIGTL 66

Query: 274 SMQGGDFMVLMPYSREKQSAA 212
++ G+F+VL+P++R+ Q +
Sbjct: 67 AVGEGEFIVLVPFARKSQQCS 87


>tr|B8B8B6|B8B8B6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_26803 PE=4 SV=1
Length = 1049

Score = 58.2 bits (139), Expect = 2e-07
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = -1

Query: 454 EVEIRTLDGRSTKVQVKGDETVGSLKRLLHQQSLLCAPTLPFHLFLRGIKLGVSKSIESL 275
E+ +R LDGRST V + +V LK L + FHLFL+G KL V I +L
Sbjct: 7 ELHVRALDGRSTVVALAAAASVRDLKAALRSSFPPAQVSPSFHLFLKGTKLRVEAEIGTL 66

Query: 274 SMQGGDFMVLMPYSREKQSAA 212
++ G+F+VL+P++R+ Q +
Sbjct: 67 AVGEGEFIVLVPFARKSQQCS 87


>tr|A3BM05|A3BM05_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_024077 PE=4 SV=1
Length = 948

Score = 58.2 bits (139), Expect = 2e-07
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = -1

Query: 454 EVEIRTLDGRSTKVQVKGDETVGSLKRLLHQQSLLCAPTLPFHLFLRGIKLGVSKSIESL 275
E+ +R LDGRST V + +V LK L + FHLFL+G KL V I +L
Sbjct: 7 ELHVRALDGRSTVVALAAAASVRDLKAALRSSFPPAQVSPSFHLFLKGTKLRVEAEIGTL 66

Query: 274 SMQGGDFMVLMPYSREKQSAA 212
++ G+F+VL+P++R+ Q +
Sbjct: 67 AVGEGEFIVLVPFARKSQQCS 87


>tr|Q9LEZ5|Q9LEZ5_ARATH Putative uncharacterized protein T22D6_50
OS=Arabidopsis thaliana GN=T22D6_50 PE=4 SV=1
Length = 1058

Score = 50.8 bits (120), Expect = 3e-05
Identities = 22/76 (28%), Positives = 45/76 (59%)
Frame = -1

Query: 451 VEIRTLDGRSTKVQVKGDETVGSLKRLLHQQSLLCAPTLPFHLFLRGIKLGVSKSIESLS 272
+ +R+++G ST VQV D T+ LK+ L + + FHL+++G KL + + +++
Sbjct: 15 ISVRSINGESTTVQVSSDGTIRDLKKALKSCFPPASSSSNFHLYIKGEKLKLDTRVAAIT 74

Query: 271 MQGGDFMVLMPYSREK 224
+ GD + L P+ +++
Sbjct: 75 INDGDILGLFPFKKKE 90


>tr|Q6Z8Y2|Q6Z8Y2_ORYSJ Os02g0111900 protein OS=Oryza sativa subsp.
japonica GN=P0501G04.31 PE=4 SV=1
Length = 927

Score = 41.6 bits (96), Expect = 0.020
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -1

Query: 451 VEIRTLDGRSTKVQVKGDETVGSLKRLLHQQSLLCAPTLPFHLFLRGIKLGVSKSIESLS 272
+ +R DGRST V + TV L+ L + FHLFL+G KL + +L
Sbjct: 7 IRVRAHDGRSTTVTIAASATVSDLRTALRSSFAPALVSPDFHLFLKGTKLIADAKVGNLP 66

Query: 271 MQGGDFMVLMP 239
+ G+ + +P
Sbjct: 67 VGPGESISFIP 77


>tr|A2X011|A2X011_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05550 PE=4 SV=1
Length = 927

Score = 41.6 bits (96), Expect = 0.020
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -1

Query: 451 VEIRTLDGRSTKVQVKGDETVGSLKRLLHQQSLLCAPTLPFHLFLRGIKLGVSKSIESLS 272
+ +R DGRST V + TV L+ L + FHLFL+G KL + +L
Sbjct: 7 IRVRAHDGRSTTVTIAASATVSDLRTALRSSFAPALVSPDFHLFLKGTKLIADAKVGNLP 66

Query: 271 MQGGDFMVLMP 239
+ G+ + +P
Sbjct: 67 VGPGESISFIP 77


>tr|B2ID71|B2ID71_BEII9 Putative uncharacterized protein
OS=Beijerinckia indica subsp. indica (strain ATCC 9039 /
DSM 1715 / NCIB 8712) GN=Bind_3276 PE=3 SV=1
Length = 147

Score = 37.4 bits (85), Expect = 0.38
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1

Query: 88 HKHHRALPESYYHYLKGLHWKLLHHY*NFHTLRYWNHFDR 207
H+HH +YH+ +W+ HHY H RY++H+ R
Sbjct: 80 HRHHHYYHHRHYHHWHHGYWRRYHHY---HHYRYYHHYRR 116


>tr|Q59H12|Q59H12_HUMAN Chordin isoform a variant (Fragment) OS=Homo
sapiens PE=2 SV=1
Length = 333

Score = 33.5 bits (75), Expect = 5.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Frame = +3

Query: 309 IPRRKRWKGRVG--------AHSKLCWCKSLLRLPTVSSPFTC 413
+P R+ WKG +G HS+ C C SL R + P C
Sbjct: 79 LPGRRSWKGTLGPGIWSKGPGHSRQCLCSSLQRRTVICDPVVC 121


>tr|Q0CBR2|Q0CBR2_ASPTN Predicted protein OS=Aspergillus terreus
(strain NIH 2624) GN=ATEG_08872 PE=4 SV=1
Length = 885

Score = 33.5 bits (75), Expect = 5.5
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3

Query: 261 PPCIERDSI-DLLTPSFIPRRKRWKGRVGAHSKLCWCKSLLRLPTVSSPFTCTFVL 425
PP ER S+ D P F+P +RW+ RV H L W L PFT T VL
Sbjct: 96 PPLHERPSVPDTAQPPFVPWNRRWE-RVQQHPPLPWRDDGLN----QFPFTATCVL 146


>tr|Q05AX1|Q05AX1_XENLA Fn3k protein OS=Xenopus laevis GN=fn3k PE=2
SV=1
Length = 332

Score = 33.1 bits (74), Expect = 7.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1

Query: 94 HHRALPESYYHYLKGLHWKLLHHY*NFHTLRYWNHFDRDLQQTVFPLSRA 243
+HR +P++ + L ++L FH+L WNHF D Q + L RA
Sbjct: 284 YHRKIPKAPGFETRSLLYQL------FHSLNNWNHFGSDFQASSLSLMRA 327