BP915640
Clone id YMU001_000074_A01
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCTCTCGTGTCGGCCATATTGTGAATGTTGATGTTGCACCTTTCTATGTAAACCTTGATT
GGAGAGCAGAAACAAACACCCTTGATAAAGAAAAAACATCAAGAGACTCGCATATGTACA
AACGTGCCCACCTGGTCCTTCCGCTCTCTTTAAGAAGCTTTTGCAGGTGACTACTGCTTT
TGCAGGTGACTACTGCTTTTAAATTAGGTCACTTGTGATGTGACAATCGGAGTGCTACCC
TTTGATTGCAGTAAGTTGCTGTTCATATGCATCACAATATGCACCAACTTCTTTGAAGGC
CGCAATAAGCCTGTGAATAATCTTTGCAAGCATTAGCCTGAACCCAACAGTCGACTGCTC
CATATCTTTGCCAGTTGCAGCAGAAACAATGCCATCCTCTGCCAAGGAACCCACAGGAGC
TCCTTGCATATACACAAGGCAAGCTCGAAGGATCAAAGGCCC
■■Homology search results ■■ -
sp_hit_id Q9ZVX1
Definition sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana
Align length 67
Score (bit) 53.1
E-value 6.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915640|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_A01.
(462 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23 O... 53 6e-07
sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 2... 47 5e-05
sp|Q5R5C1|UROM_PONAB Uromodulin OS=Pongo abelii GN=UMOD PE=2 SV=1 32 1.0
sp|P07911|UROM_HUMAN Uromodulin OS=Homo sapiens GN=UMOD PE=1 SV=1 32 1.0
sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 O... 31 2.9
sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dict... 31 3.0
sp|A6TG86|FDHD_KLEP7 Protein fdhD homolog OS=Klebsiella pneumoni... 31 3.0
sp|Q8GY87|UBC26_ARATH Probable ubiquitin carrier protein E2 26 O... 30 5.1
sp|P75135|RBGA_MYCPN Probable ribosome biogenesis GTPase A OS=My... 30 6.7
sp|Q9XXK1|ATPA_CAEEL ATP synthase subunit alpha, mitochondrial O... 30 6.7
sp|Q6Y306|MRP9_RAT Multidrug resistance-associated protein 9 OS=... 29 8.7
sp|Q80WJ6|MRP9_MOUSE Multidrug resistance-associated protein 9 O... 29 8.7
sp|P35381|ATPA_DROME ATP synthase subunit alpha, mitochondrial O... 29 8.7

>sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23
OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1
Length = 1102

Score = 53.1 bits (126), Expect = 6e-07
Identities = 29/67 (43%), Positives = 41/67 (61%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVG 283
G IL+AC YM+G +GSL +D V ++VGF+LMLAKI +L +A EVG
Sbjct: 1032 GYYILKACDAYMKGYLIGSLTKDASVIDERSS-ANSTSVGFKLMLAKIAPKLFSALSEVG 1090

Query: 282 AYCDAYE 262
A C+ ++
Sbjct: 1091 ADCNEFQ 1097


>sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24
OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1
Length = 907

Score = 46.6 bits (109), Expect = 5e-05
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = -1

Query: 453 ILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVGAYC 274
+L AC YM+G PVGS A G ST GF++ML+K+ +L+ AF E+G C
Sbjct: 847 VLAACKAYMEGVPVGSSAN------LQGNSTTNST-GFKIMLSKLYPKLLEAFSEIGVDC 899


>sp|Q5R5C1|UROM_PONAB Uromodulin OS=Pongo abelii GN=UMOD PE=2 SV=1
Length = 641

Score = 32.3 bits (72), Expect = 1.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3

Query: 412 GFLGRGWHCFCCNWQRYGAVDCWVQANA--CKDYSQAYCGLQRSW 284
G+ G GWHC C +DC + +A C D QA+ L W
Sbjct: 140 GYRGDGWHCECSPGSCGPGLDCVPEGDALVCADPCQAHRTLDEYW 184


>sp|P07911|UROM_HUMAN Uromodulin OS=Homo sapiens GN=UMOD PE=1 SV=1
Length = 640

Score = 32.3 bits (72), Expect = 1.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3

Query: 412 GFLGRGWHCFCCNWQRYGAVDCWVQANA--CKDYSQAYCGLQRSW 284
G+ G GWHC C +DC + +A C D QA+ L W
Sbjct: 140 GYRGDGWHCECSPGSCGPGLDCVPEGDALVCADPCQAHRTLDEYW 184


>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus
musculus GN=Notch1 PE=1 SV=2
Length = 2531

Score = 30.8 bits (68), Expect = 2.9
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3

Query: 327 QALA*TQQSTAPYLCQLQQKQCHPLPRNPQELLAYTQGKLEGSKA 461
Q L T+ +T P+L Q QQ Q LP PQ L +Q L S A
Sbjct: 2355 QGLPNTRLATQPHLVQTQQVQPQNLPLQPQNLQPPSQPHLSVSSA 2399


>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB
OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1
Length = 325

Score = 30.8 bits (68), Expect = 3.0
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = -1

Query: 423 GAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKII----HRLIAAFKEVGAYCD 271
G P+ L D +S GK + S RL + L+AAFKE+G D
Sbjct: 79 GGPINPLLRDSALSTTVGKGSKDSGTLTRLQNKSALGTGDRNLLAAFKEIGRMAD 133


>sp|A6TG86|FDHD_KLEP7 Protein fdhD homolog OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=fdhD PE=3 SV=1
Length = 278

Score = 30.8 bits (68), Expect = 3.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1

Query: 390 IVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVGAYCDAYEQQL 253
+V A+ KD+EQ VGF L I HR +V A C+ E Q+
Sbjct: 53 VVMMASPKDLEQFAVGFSLSEGIIEHRREIFGMDVVAVCNGLEVQI 98


>sp|Q8GY87|UBC26_ARATH Probable ubiquitin carrier protein E2 26
OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2
Length = 543

Score = 30.0 bits (66), Expect = 5.1
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = -1

Query: 453 ILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVG 283
I++AC Y GAP+GS+ + G+ + + + F+ +A + ++ F ++G
Sbjct: 456 IVKACNAYKAGAPLGSMVKGGVQDLEEAR--QSGSKKFKTDVASFMQTVVDEFVKLG 510


>sp|P75135|RBGA_MYCPN Probable ribosome biogenesis GTPase A
OS=Mycoplasma pneumoniae GN=rbgA PE=3 SV=1
Length = 271

Score = 29.6 bits (65), Expect = 6.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1

Query: 369 KDMEQSTVGFRLMLAKIIHRLIAAFKEVGAYCDAY 265
K +++ VG++L+L +I R + ++VGA+ Y
Sbjct: 175 KRIDEMAVGYKLVLTNVIKREVVPLEDVGAFAFCY 209


>sp|Q9XXK1|ATPA_CAEEL ATP synthase subunit alpha, mitochondrial
OS=Caenorhabditis elegans GN=H28O16.1 PE=1 SV=1
Length = 538

Score = 29.6 bits (65), Expect = 6.7
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGS--LAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKE 289
G + L L Y P + L+ + SAA K M+Q +L LA+ +R +AAF +
Sbjct: 376 GQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQ--YREVAAFAQ 433

Query: 288 VGAYCDAYEQQL 253
G+ DA QQL
Sbjct: 434 FGSDLDASTQQL 445


tr_hit_id Q9AWU5
Definition tr|Q9AWU5|Q9AWU5_ORYSJ P0044F08.17 protein OS=Oryza sativa subsp. japonica
Align length 68
Score (bit) 61.2
E-value 2.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915640|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_A01.
(462 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9AWU5|Q9AWU5_ORYSJ P0044F08.17 protein OS=Oryza sativa subsp... 61 2e-08
tr|Q5ZCB9|Q5ZCB9_ORYSJ Ubiquitin-conjugating enzyme-like (Os01g0... 61 2e-08
tr|A2ZNS8|A2ZNS8_ORYSJ Putative uncharacterized protein OS=Oryza... 61 2e-08
tr|A2WK64|A2WK64_ORYSI Putative uncharacterized protein OS=Oryza... 61 2e-08
tr|A9P2M6|A9P2M6_PICSI Putative uncharacterized protein OS=Picea... 59 9e-08
tr|A9SVT6|A9SVT6_PHYPA Predicted protein (Fragment) OS=Physcomit... 56 8e-07
tr|A7P8D5|A7P8D5_VITVI Chromosome chr3 scaffold_8, whole genome ... 54 4e-06
tr|A9SIU9|A9SIU9_PHYPA Predicted protein OS=Physcomitrella paten... 47 4e-04
tr|B2L1Z0|B2L1Z0_NICBE PHO2 OS=Nicotiana benthamiana PE=2 SV=1 45 0.002
tr|Q6I601|Q6I601_ORYSJ Putative uncharacterized protein OJ1214_E... 43 0.009
tr|Q0DG18|Q0DG18_ORYSJ Os05g0557700 protein OS=Oryza sativa subs... 43 0.009
tr|B8AWH8|B8AWH8_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.009
tr|B7F902|B7F902_ORYSJ cDNA, clone: J065202E18, full insert sequ... 43 0.009
tr|Q4WG50|Q4WG50_ASPFU ARF GTPase activator (Csx2), putative OS=... 35 1.4
tr|B0YC88|B0YC88_ASPFC ARF GTPase activator (Csx2), putative OS=... 35 1.4
tr|A1DC44|A1DC44_NEOFI ARF GTPase activator (Csx2), putative OS=... 35 1.4
tr|Q9C917|Q9C917_ARATH Putative ubiquitin-conjugating enzyme; 12... 34 3.1
tr|Q65XP5|Q65XP5_ORYSJ Putative ubiquitin-conjugating enzyme OS=... 34 3.1
tr|A2Y0I3|A2Y0I3_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.1
tr|Q23JU2|Q23JU2_TETTH Putative uncharacterized protein OS=Tetra... 34 4.1
tr|Q5B5A6|Q5B5A6_EMENI Putative uncharacterized protein OS=Emeri... 33 7.0
tr|A2R173|A2R173_ASPNC Contig An13c0010, complete genome OS=Aspe... 33 9.1
tr|B3KRN9|B3KRN9_HUMAN cDNA FLJ34642 fis, clone KIDNE2016918, hi... 33 9.2

>tr|Q9AWU5|Q9AWU5_ORYSJ P0044F08.17 protein OS=Oryza sativa subsp.
japonica GN=P0044F08.17 PE=3 SV=1
Length = 1067

Score = 61.2 bits (147), Expect = 2e-08
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQS-TVGFRLMLAKIIHRLIAAFKEV 286
G IL+AC Y+QG VG+L +D + T + EQ +VGF+L LAKI+ RLI A K+
Sbjct: 992 GKYILKACEAYLQGNGVGTLTDD---ACTTERSKEQPCSVGFKLALAKIMPRLITALKDA 1048

Query: 285 GAYCDAYE 262
GA CD YE
Sbjct: 1049 GANCDQYE 1056


>tr|Q5ZCB9|Q5ZCB9_ORYSJ Ubiquitin-conjugating enzyme-like
(Os01g0125900 protein) OS=Oryza sativa subsp. japonica
GN=P0037C04.36 PE=3 SV=1
Length = 1063

Score = 61.2 bits (147), Expect = 2e-08
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQS-TVGFRLMLAKIIHRLIAAFKEV 286
G IL+AC Y+QG VG+L +D + T + EQ +VGF+L LAKI+ RLI A K+
Sbjct: 988 GKYILKACEAYLQGNGVGTLTDD---ACTTERSKEQPCSVGFKLALAKIMPRLITALKDA 1044

Query: 285 GAYCDAYE 262
GA CD YE
Sbjct: 1045 GANCDQYE 1052


>tr|A2ZNS8|A2ZNS8_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_000200 PE=3 SV=1
Length = 1056

Score = 61.2 bits (147), Expect = 2e-08
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQS-TVGFRLMLAKIIHRLIAAFKEV 286
G IL+AC Y+QG VG+L +D + T + EQ +VGF+L LAKI+ RLI A K+
Sbjct: 981 GKYILKACEAYLQGNGVGTLTDD---ACTTERSKEQPCSVGFKLALAKIMPRLITALKDA 1037

Query: 285 GAYCDAYE 262
GA CD YE
Sbjct: 1038 GANCDQYE 1045


>tr|A2WK64|A2WK64_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_00213 PE=3 SV=1
Length = 1056

Score = 61.2 bits (147), Expect = 2e-08
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQS-TVGFRLMLAKIIHRLIAAFKEV 286
G IL+AC Y+QG VG+L +D + T + EQ +VGF+L LAKI+ RLI A K+
Sbjct: 981 GKYILKACEAYLQGNGVGTLTDD---ACTTERSKEQPCSVGFKLALAKIMPRLITALKDA 1037

Query: 285 GAYCDAYE 262
GA CD YE
Sbjct: 1038 GANCDQYE 1045


>tr|A9P2M6|A9P2M6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 108

Score = 59.3 bits (142), Expect = 9e-08
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQ-STVGFRLMLAKIIHRLIAAFKEV 286
G IL AC YM GA VG L+ + ++ D + S++GF++MLAK+I +L+ AFKEV
Sbjct: 27 GHYILGACNAYMMGAQVGCLSGEAMMGVHGRADTQSTSSIGFKIMLAKLIPKLVLAFKEV 86

Query: 285 GAYCDAY 265
GA C+ +
Sbjct: 87 GADCEEF 93


>tr|A9SVT6|A9SVT6_PHYPA Predicted protein (Fragment) OS=Physcomitrella
patens subsp. patens GN=PHYPADRAFT_40312 PE=3 SV=1
Length = 950

Score = 56.2 bits (134), Expect = 8e-07
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDM---EQSTVGFRLMLAKIIHRLIAAFK 292
G +LR+C Y+QGAPVGSL E+ S ++ ++S+ GF+LML K++ +L AFK
Sbjct: 883 GASLLRSCEAYLQGAPVGSLVENKNTSTLADTELVGADKSSAGFKLMLKKLVVKLEEAFK 942

Query: 291 EVGAYCD 271
E+G D
Sbjct: 943 ELGVEYD 949


>tr|A7P8D5|A7P8D5_VITVI Chromosome chr3 scaffold_8, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036139001
PE=3 SV=1
Length = 967

Score = 53.9 bits (128), Expect = 4e-06
Identities = 29/67 (43%), Positives = 41/67 (61%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVG 283
G IL+AC YM+G +GSL++D S + + ++VGF+LML KI RL A EVG
Sbjct: 898 GYYILKACDAYMKGYLIGSLSKDA--STSDRSNTNSTSVGFKLMLTKIAPRLFLALNEVG 955

Query: 282 AYCDAYE 262
A C ++
Sbjct: 956 ADCQEFK 962


>tr|A9SIU9|A9SIU9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_130636 PE=3 SV=1
Length = 881

Score = 47.4 bits (111), Expect = 4e-04
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = -1

Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEV 286
GP IL+ C YM GA VGSL D A +ST+GFR++L K++ +L A F ++
Sbjct: 798 GPSILKICAAYMNGALVGSLNNDLQPEADDSSFKMKSTLGFRIVLGKLLIKLTAEFTKL 856


>tr|B2L1Z0|B2L1Z0_NICBE PHO2 OS=Nicotiana benthamiana PE=2 SV=1
Length = 921

Score = 44.7 bits (104), Expect = 0.002
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = -1

Query: 453 ILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVGAYC 274
IL AC YM GAPVGS + + + +E S+ GF++ML K+ +L+AAF G C
Sbjct: 860 ILLACKAYMDGAPVGSAFQP---KSQEQELIEGSSTGFKIMLGKLFPKLMAAFTGKGIDC 916


>tr|Q6I601|Q6I601_ORYSJ Putative uncharacterized protein OJ1214_E03.18
(Putative uncharacterized protein) OS=Oryza sativa subsp.
japonica GN=OJ1214_E03.18 PE=3 SV=1
Length = 993

Score = 42.7 bits (99), Expect = 0.009
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = -1

Query: 459 PLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVGA 280
P IL AC Y+ G VG + +S K+ S+ GF++MLAK++ +L+ F E G
Sbjct: 933 PHILDACKAYLGGDLVGHARDSAYISDDGCKN---SSTGFKIMLAKLLPKLVTTFSEAGI 989

Query: 279 YC 274
C
Sbjct: 990 PC 991