BP915640 |
Clone id |
YMU001_000074_A01 |
Library |
YMU01 |
Length |
462 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000074_A01. |
Accession |
BP915640 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3685Contig1 |
Sequence |
CCTCTCGTGTCGGCCATATTGTGAATGTTGATGTTGCACCTTTCTATGTAAACCTTGATT GGAGAGCAGAAACAAACACCCTTGATAAAGAAAAAACATCAAGAGACTCGCATATGTACA AACGTGCCCACCTGGTCCTTCCGCTCTCTTTAAGAAGCTTTTGCAGGTGACTACTGCTTT TGCAGGTGACTACTGCTTTTAAATTAGGTCACTTGTGATGTGACAATCGGAGTGCTACCC TTTGATTGCAGTAAGTTGCTGTTCATATGCATCACAATATGCACCAACTTCTTTGAAGGC CGCAATAAGCCTGTGAATAATCTTTGCAAGCATTAGCCTGAACCCAACAGTCGACTGCTC CATATCTTTGCCAGTTGCAGCAGAAACAATGCCATCCTCTGCCAAGGAACCCACAGGAGC TCCTTGCATATACACAAGGCAAGCTCGAAGGATCAAAGGCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZVX1 |
Definition |
sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana |
Align length |
67 |
Score (bit) |
53.1 |
E-value |
6.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915640|Adiantum capillus-veneris mRNA, clone: YMU001_000074_A01. (462 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23 O... 53 6e-07 sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 2... 47 5e-05 sp|Q5R5C1|UROM_PONAB Uromodulin OS=Pongo abelii GN=UMOD PE=2 SV=1 32 1.0 sp|P07911|UROM_HUMAN Uromodulin OS=Homo sapiens GN=UMOD PE=1 SV=1 32 1.0 sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 O... 31 2.9 sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dict... 31 3.0 sp|A6TG86|FDHD_KLEP7 Protein fdhD homolog OS=Klebsiella pneumoni... 31 3.0 sp|Q8GY87|UBC26_ARATH Probable ubiquitin carrier protein E2 26 O... 30 5.1 sp|P75135|RBGA_MYCPN Probable ribosome biogenesis GTPase A OS=My... 30 6.7 sp|Q9XXK1|ATPA_CAEEL ATP synthase subunit alpha, mitochondrial O... 30 6.7 sp|Q6Y306|MRP9_RAT Multidrug resistance-associated protein 9 OS=... 29 8.7 sp|Q80WJ6|MRP9_MOUSE Multidrug resistance-associated protein 9 O... 29 8.7 sp|P35381|ATPA_DROME ATP synthase subunit alpha, mitochondrial O... 29 8.7
>sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1 Length = 1102
Score = 53.1 bits (126), Expect = 6e-07 Identities = 29/67 (43%), Positives = 41/67 (61%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVG 283 G IL+AC YM+G +GSL +D V ++VGF+LMLAKI +L +A EVG Sbjct: 1032 GYYILKACDAYMKGYLIGSLTKDASVIDERSS-ANSTSVGFKLMLAKIAPKLFSALSEVG 1090
Query: 282 AYCDAYE 262 A C+ ++ Sbjct: 1091 ADCNEFQ 1097
>sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1 Length = 907
Score = 46.6 bits (109), Expect = 5e-05 Identities = 25/60 (41%), Positives = 34/60 (56%) Frame = -1
Query: 453 ILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVGAYC 274 +L AC YM+G PVGS A G ST GF++ML+K+ +L+ AF E+G C Sbjct: 847 VLAACKAYMEGVPVGSSAN------LQGNSTTNST-GFKIMLSKLYPKLLEAFSEIGVDC 899
>sp|Q5R5C1|UROM_PONAB Uromodulin OS=Pongo abelii GN=UMOD PE=2 SV=1 Length = 641
Score = 32.3 bits (72), Expect = 1.0 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = -3
Query: 412 GFLGRGWHCFCCNWQRYGAVDCWVQANA--CKDYSQAYCGLQRSW 284 G+ G GWHC C +DC + +A C D QA+ L W Sbjct: 140 GYRGDGWHCECSPGSCGPGLDCVPEGDALVCADPCQAHRTLDEYW 184
>sp|P07911|UROM_HUMAN Uromodulin OS=Homo sapiens GN=UMOD PE=1 SV=1 Length = 640
Score = 32.3 bits (72), Expect = 1.0 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = -3
Query: 412 GFLGRGWHCFCCNWQRYGAVDCWVQANA--CKDYSQAYCGLQRSW 284 G+ G GWHC C +DC + +A C D QA+ L W Sbjct: 140 GYRGDGWHCECSPGSCGPGLDCVPEGDALVCADPCQAHRTLDEYW 184
>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus musculus GN=Notch1 PE=1 SV=2 Length = 2531
Score = 30.8 bits (68), Expect = 2.9 Identities = 19/45 (42%), Positives = 23/45 (51%) Frame = +3
Query: 327 QALA*TQQSTAPYLCQLQQKQCHPLPRNPQELLAYTQGKLEGSKA 461 Q L T+ +T P+L Q QQ Q LP PQ L +Q L S A Sbjct: 2355 QGLPNTRLATQPHLVQTQQVQPQNLPLQPQNLQPPSQPHLSVSSA 2399
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1 Length = 325
Score = 30.8 bits (68), Expect = 3.0 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Frame = -1
Query: 423 GAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKII----HRLIAAFKEVGAYCD 271 G P+ L D +S GK + S RL + L+AAFKE+G D Sbjct: 79 GGPINPLLRDSALSTTVGKGSKDSGTLTRLQNKSALGTGDRNLLAAFKEIGRMAD 133
>sp|A6TG86|FDHD_KLEP7 Protein fdhD homolog OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fdhD PE=3 SV=1 Length = 278
Score = 30.8 bits (68), Expect = 3.0 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -1
Query: 390 IVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVGAYCDAYEQQL 253 +V A+ KD+EQ VGF L I HR +V A C+ E Q+ Sbjct: 53 VVMMASPKDLEQFAVGFSLSEGIIEHRREIFGMDVVAVCNGLEVQI 98
>sp|Q8GY87|UBC26_ARATH Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2 Length = 543
Score = 30.0 bits (66), Expect = 5.1 Identities = 14/57 (24%), Positives = 30/57 (52%) Frame = -1
Query: 453 ILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVG 283 I++AC Y GAP+GS+ + G+ + + + F+ +A + ++ F ++G Sbjct: 456 IVKACNAYKAGAPLGSMVKGGVQDLEEAR--QSGSKKFKTDVASFMQTVVDEFVKLG 510
>sp|P75135|RBGA_MYCPN Probable ribosome biogenesis GTPase A OS=Mycoplasma pneumoniae GN=rbgA PE=3 SV=1 Length = 271
Score = 29.6 bits (65), Expect = 6.7 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -1
Query: 369 KDMEQSTVGFRLMLAKIIHRLIAAFKEVGAYCDAY 265 K +++ VG++L+L +I R + ++VGA+ Y Sbjct: 175 KRIDEMAVGYKLVLTNVIKREVVPLEDVGAFAFCY 209
>sp|Q9XXK1|ATPA_CAEEL ATP synthase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=H28O16.1 PE=1 SV=1 Length = 538
Score = 29.6 bits (65), Expect = 6.7 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGS--LAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKE 289 G + L L Y P + L+ + SAA K M+Q +L LA+ +R +AAF + Sbjct: 376 GQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQ--YREVAAFAQ 433
Query: 288 VGAYCDAYEQQL 253 G+ DA QQL Sbjct: 434 FGSDLDASTQQL 445
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9AWU5 |
Definition |
tr|Q9AWU5|Q9AWU5_ORYSJ P0044F08.17 protein OS=Oryza sativa subsp. japonica |
Align length |
68 |
Score (bit) |
61.2 |
E-value |
2.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915640|Adiantum capillus-veneris mRNA, clone: YMU001_000074_A01. (462 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9AWU5|Q9AWU5_ORYSJ P0044F08.17 protein OS=Oryza sativa subsp... 61 2e-08 tr|Q5ZCB9|Q5ZCB9_ORYSJ Ubiquitin-conjugating enzyme-like (Os01g0... 61 2e-08 tr|A2ZNS8|A2ZNS8_ORYSJ Putative uncharacterized protein OS=Oryza... 61 2e-08 tr|A2WK64|A2WK64_ORYSI Putative uncharacterized protein OS=Oryza... 61 2e-08 tr|A9P2M6|A9P2M6_PICSI Putative uncharacterized protein OS=Picea... 59 9e-08 tr|A9SVT6|A9SVT6_PHYPA Predicted protein (Fragment) OS=Physcomit... 56 8e-07 tr|A7P8D5|A7P8D5_VITVI Chromosome chr3 scaffold_8, whole genome ... 54 4e-06 tr|A9SIU9|A9SIU9_PHYPA Predicted protein OS=Physcomitrella paten... 47 4e-04 tr|B2L1Z0|B2L1Z0_NICBE PHO2 OS=Nicotiana benthamiana PE=2 SV=1 45 0.002 tr|Q6I601|Q6I601_ORYSJ Putative uncharacterized protein OJ1214_E... 43 0.009 tr|Q0DG18|Q0DG18_ORYSJ Os05g0557700 protein OS=Oryza sativa subs... 43 0.009 tr|B8AWH8|B8AWH8_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.009 tr|B7F902|B7F902_ORYSJ cDNA, clone: J065202E18, full insert sequ... 43 0.009 tr|Q4WG50|Q4WG50_ASPFU ARF GTPase activator (Csx2), putative OS=... 35 1.4 tr|B0YC88|B0YC88_ASPFC ARF GTPase activator (Csx2), putative OS=... 35 1.4 tr|A1DC44|A1DC44_NEOFI ARF GTPase activator (Csx2), putative OS=... 35 1.4 tr|Q9C917|Q9C917_ARATH Putative ubiquitin-conjugating enzyme; 12... 34 3.1 tr|Q65XP5|Q65XP5_ORYSJ Putative ubiquitin-conjugating enzyme OS=... 34 3.1 tr|A2Y0I3|A2Y0I3_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.1 tr|Q23JU2|Q23JU2_TETTH Putative uncharacterized protein OS=Tetra... 34 4.1 tr|Q5B5A6|Q5B5A6_EMENI Putative uncharacterized protein OS=Emeri... 33 7.0 tr|A2R173|A2R173_ASPNC Contig An13c0010, complete genome OS=Aspe... 33 9.1 tr|B3KRN9|B3KRN9_HUMAN cDNA FLJ34642 fis, clone KIDNE2016918, hi... 33 9.2
>tr|Q9AWU5|Q9AWU5_ORYSJ P0044F08.17 protein OS=Oryza sativa subsp. japonica GN=P0044F08.17 PE=3 SV=1 Length = 1067
Score = 61.2 bits (147), Expect = 2e-08 Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQS-TVGFRLMLAKIIHRLIAAFKEV 286 G IL+AC Y+QG VG+L +D + T + EQ +VGF+L LAKI+ RLI A K+ Sbjct: 992 GKYILKACEAYLQGNGVGTLTDD---ACTTERSKEQPCSVGFKLALAKIMPRLITALKDA 1048
Query: 285 GAYCDAYE 262 GA CD YE Sbjct: 1049 GANCDQYE 1056
>tr|Q5ZCB9|Q5ZCB9_ORYSJ Ubiquitin-conjugating enzyme-like (Os01g0125900 protein) OS=Oryza sativa subsp. japonica GN=P0037C04.36 PE=3 SV=1 Length = 1063
Score = 61.2 bits (147), Expect = 2e-08 Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQS-TVGFRLMLAKIIHRLIAAFKEV 286 G IL+AC Y+QG VG+L +D + T + EQ +VGF+L LAKI+ RLI A K+ Sbjct: 988 GKYILKACEAYLQGNGVGTLTDD---ACTTERSKEQPCSVGFKLALAKIMPRLITALKDA 1044
Query: 285 GAYCDAYE 262 GA CD YE Sbjct: 1045 GANCDQYE 1052
>tr|A2ZNS8|A2ZNS8_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_000200 PE=3 SV=1 Length = 1056
Score = 61.2 bits (147), Expect = 2e-08 Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQS-TVGFRLMLAKIIHRLIAAFKEV 286 G IL+AC Y+QG VG+L +D + T + EQ +VGF+L LAKI+ RLI A K+ Sbjct: 981 GKYILKACEAYLQGNGVGTLTDD---ACTTERSKEQPCSVGFKLALAKIMPRLITALKDA 1037
Query: 285 GAYCDAYE 262 GA CD YE Sbjct: 1038 GANCDQYE 1045
>tr|A2WK64|A2WK64_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00213 PE=3 SV=1 Length = 1056
Score = 61.2 bits (147), Expect = 2e-08 Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQS-TVGFRLMLAKIIHRLIAAFKEV 286 G IL+AC Y+QG VG+L +D + T + EQ +VGF+L LAKI+ RLI A K+ Sbjct: 981 GKYILKACEAYLQGNGVGTLTDD---ACTTERSKEQPCSVGFKLALAKIMPRLITALKDA 1037
Query: 285 GAYCDAYE 262 GA CD YE Sbjct: 1038 GANCDQYE 1045
>tr|A9P2M6|A9P2M6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 108
Score = 59.3 bits (142), Expect = 9e-08 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQ-STVGFRLMLAKIIHRLIAAFKEV 286 G IL AC YM GA VG L+ + ++ D + S++GF++MLAK+I +L+ AFKEV Sbjct: 27 GHYILGACNAYMMGAQVGCLSGEAMMGVHGRADTQSTSSIGFKIMLAKLIPKLVLAFKEV 86
Query: 285 GAYCDAY 265 GA C+ + Sbjct: 87 GADCEEF 93
>tr|A9SVT6|A9SVT6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_40312 PE=3 SV=1 Length = 950
Score = 56.2 bits (134), Expect = 8e-07 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDM---EQSTVGFRLMLAKIIHRLIAAFK 292 G +LR+C Y+QGAPVGSL E+ S ++ ++S+ GF+LML K++ +L AFK Sbjct: 883 GASLLRSCEAYLQGAPVGSLVENKNTSTLADTELVGADKSSAGFKLMLKKLVVKLEEAFK 942
Query: 291 EVGAYCD 271 E+G D Sbjct: 943 ELGVEYD 949
>tr|A7P8D5|A7P8D5_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036139001 PE=3 SV=1 Length = 967
Score = 53.9 bits (128), Expect = 4e-06 Identities = 29/67 (43%), Positives = 41/67 (61%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVG 283 G IL+AC YM+G +GSL++D S + + ++VGF+LML KI RL A EVG Sbjct: 898 GYYILKACDAYMKGYLIGSLSKDA--STSDRSNTNSTSVGFKLMLTKIAPRLFLALNEVG 955
Query: 282 AYCDAYE 262 A C ++ Sbjct: 956 ADCQEFK 962
>tr|A9SIU9|A9SIU9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_130636 PE=3 SV=1 Length = 881
Score = 47.4 bits (111), Expect = 4e-04 Identities = 25/59 (42%), Positives = 35/59 (59%) Frame = -1
Query: 462 GPLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEV 286 GP IL+ C YM GA VGSL D A +ST+GFR++L K++ +L A F ++ Sbjct: 798 GPSILKICAAYMNGALVGSLNNDLQPEADDSSFKMKSTLGFRIVLGKLLIKLTAEFTKL 856
>tr|B2L1Z0|B2L1Z0_NICBE PHO2 OS=Nicotiana benthamiana PE=2 SV=1 Length = 921
Score = 44.7 bits (104), Expect = 0.002 Identities = 25/60 (41%), Positives = 35/60 (58%) Frame = -1
Query: 453 ILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVGAYC 274 IL AC YM GAPVGS + + + +E S+ GF++ML K+ +L+AAF G C Sbjct: 860 ILLACKAYMDGAPVGSAFQP---KSQEQELIEGSSTGFKIMLGKLFPKLMAAFTGKGIDC 916
>tr|Q6I601|Q6I601_ORYSJ Putative uncharacterized protein OJ1214_E03.18 (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica GN=OJ1214_E03.18 PE=3 SV=1 Length = 993
Score = 42.7 bits (99), Expect = 0.009 Identities = 23/62 (37%), Positives = 34/62 (54%) Frame = -1
Query: 459 PLILRACLVYMQGAPVGSLAEDGIVSAATGKDMEQSTVGFRLMLAKIIHRLIAAFKEVGA 280 P IL AC Y+ G VG + +S K+ S+ GF++MLAK++ +L+ F E G Sbjct: 933 PHILDACKAYLGGDLVGHARDSAYISDDGCKN---SSTGFKIMLAKLLPKLVTTFSEAGI 989
Query: 279 YC 274 C Sbjct: 990 PC 991
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