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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915499
Clone id YMU001_000072_D03
Library
Length 486
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGGGATCTCAAAAATAGAACTAAGAAAAGGATCCTTCACTTTCACAGCAATACTAGAGA
GGAAATAGCTTTCCTAGCTTCTGGAAGCTTAGCACCAATCCCACAGAGGTTGGTGAAAAA
AGGAACTCTAGACAGGGCAACACCATTCCCTGTAGATTGGAAGCACAAGCCTTTCAGAAT
GTACACCCCATGCAAGGTGACAAAACTCCCATACTTGGACTGGCCAACCTCAAGGATGAT
GAGACCAAGCCCTGCAGGGAAGAGATTCAGAAGGGCGACAACATGAGCCGGCACCCGCTC
CTGAGAAAGCGATGATGTCGATGTGGTTTTCACATTCTTTGAGCATTTGGCAATGGGGGA
AAGCGAAGAGGAGGAAGAATTAGGTGGTTAGGGCTCTTTTACAAAAGAGGTGCAAGGGCC
CTTGGAGTGTATGAGCATGGCTAAAGCTTGGGGAGACGAAGTATCATAGCTGAGTGTGGG
CTTGTG
■■Homology search results ■■ -
sp_hit_id Q8Z257
Definition sp|Q8Z257|YHHS_SALTI UPF0226 protein yhhS OS=Salmonella typhi
Align length 36
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915499|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_D03.
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8Z257|YHHS_SALTI UPF0226 protein yhhS OS=Salmonella typhi GN...    31   3.4  
sp|Q803S3|MEMO1_DANRE Protein MEMO1 OS=Danio rerio GN=memo1 PE=2...    30   5.7  
sp|Q5U8S9|EFG_STAIN Elongation factor G OS=Staphylococcus interm...    29   9.8  

>sp|Q8Z257|YHHS_SALTI UPF0226 protein yhhS OS=Salmonella typhi
           GN=yhhS PE=3 SV=3
          Length = 405

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 273 LLNLFPAGLGLIILEVGQSKYGSFVTLHGVYILKGL 166
           ++NL   GLG +IL +GQS  G+  TL GV ++  L
Sbjct: 111 MINLLLLGLGRVILGIGQSFAGTGSTLWGVGVVGSL 146


>sp|Q803S3|MEMO1_DANRE Protein MEMO1 OS=Danio rerio GN=memo1 PE=2
           SV=1
          Length = 297

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 263 SSLQGLVSSSLRLASPSMGVLSPCMGCTF*KACASNLQGMVLPCLE---FLFSPT 108
           + L+G +S +  +A P+  +++P  G T+  ACA++    V P +    F+  P+
Sbjct: 26  AQLEGWLSQAQSIAGPARAIIAPHAGYTYCGACAAHAYKQVDPSITRRVFILGPS 80


>sp|Q5U8S9|EFG_STAIN Elongation factor G OS=Staphylococcus
           intermedius GN=fusA PE=3 SV=3
          Length = 693

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
 Frame = +2

Query: 8   LKNRTKK------RILHFHSNTREEIAFLASGSLA 94
           +KN TK       RIL  H+N+REEI+ + SG +A
Sbjct: 341 VKNSTKGKRERVGRILQMHANSREEISSVYSGDIA 375
tr_hit_id Q31QE8
Definition tr|Q31QE8|Q31QE8_SYNE7 Putative uncharacterized protein OS=Synechococcus elongatus (strain PCC 7942)
Align length 61
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915499|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_D03.
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q31QE8|Q31QE8_SYNE7 Putative uncharacterized protein OS=Synec...    35   1.9  
tr|B0NQM4|B0NQM4_BACSE Putative uncharacterized protein OS=Bacte...    35   2.5  
tr|B6W1H1|B6W1H1_9BACE Putative uncharacterized protein OS=Bacte...    33   5.5  
tr|A7V0Z1|A7V0Z1_BACUN Putative uncharacterized protein OS=Bacte...    33   5.5  
tr|Q6CMQ4|Q6CMQ4_KLULA KLLA0E18481p OS=Kluyveromyces lactis GN=K...    33   5.5  
tr|A6L2I2|A6L2I2_BACV8 Putative transmembrane transport protein ...    33   7.2  
tr|A0QQ67|A0QQ67_MYCS2 Putative beta-1,3-glucanase OS=Mycobacter...    33   7.2  
tr|B7AHN1|B7AHN1_9BACE Putative uncharacterized protein OS=Bacte...    33   7.2  
tr|B3CI22|B3CI22_9BACE Putative uncharacterized protein OS=Bacte...    33   7.2  
tr|Q1YE47|Q1YE47_MOBAS Carbohydrate kinase, thermoresistant gluc...    33   9.3  
tr|B6Q2C1|B6Q2C1_PENMA Nuclear migration protein (ApsA), putativ...    33   9.3  

>tr|Q31QE8|Q31QE8_SYNE7 Putative uncharacterized protein
           OS=Synechococcus elongatus (strain PCC 7942)
           GN=Synpcc7942_0689 PE=3 SV=1
          Length = 277

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/61 (37%), Positives = 30/61 (49%)
 Frame = -1

Query: 300 ERVPAHVVALLNLFPAGLGLIILEVGQSKYGSFVTLHGVYILKGLCFQSTGNGVALSRVP 121
           +RVPA +V L  L+   LGL  L +  S   S VTL G+Y++  L     G      R P
Sbjct: 22  QRVPAFLVILALLWLPWLGLGSLAIADSNSRSIVTLVGLYVIFLLLLPRWGESQTAWRQP 81

Query: 120 F 118
           F
Sbjct: 82  F 82


>tr|B0NQM4|B0NQM4_BACSE Putative uncharacterized protein
           OS=Bacteroides stercoris ATCC 43183 GN=BACSTE_01673 PE=4
           SV=1
          Length = 398

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -1

Query: 345 CSKNVKTTSTSSLSQERVPAHVVALLNLFPAGLGLIILEVGQSKYGSFVTLH----GVYI 178
           C+  VKT     + +E V      LL   PAG+ L++L +      ++V ++    G++ 
Sbjct: 180 CASLVKTPYKPPVRREPVSLDRFILLKGIPAGISLLLLSIPYGMTTNYVAMYAKEIGIHA 239

Query: 177 LKGLCFQSTGNGVALSRV 124
             G  F     G+A+SR+
Sbjct: 240 TTGFFFTFMAVGMAISRI 257


>tr|B6W1H1|B6W1H1_9BACE Putative uncharacterized protein
           OS=Bacteroides dorei DSM 17855 GN=BACDOR_03521 PE=4 SV=1
          Length = 398

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = -1

Query: 345 CSKNVKTTSTSSLSQERVPAHVVALLNLFPAGLGLIILEVGQSKYGSFVTLH----GVYI 178
           C+  VKTT    + +E +      LL   PAG  L++L +      ++V ++    G+  
Sbjct: 180 CASLVKTTYKPPVKREPISLDRFILLKGIPAGFSLLLLSIPYGMTTNYVAMYAKQIGIQA 239

Query: 177 LKGLCFQSTGNGVALSRV 124
             G  F     G+A+SR+
Sbjct: 240 STGFFFTFMALGMAVSRL 257


>tr|A7V0Z1|A7V0Z1_BACUN Putative uncharacterized protein
           OS=Bacteroides uniformis ATCC 8492 GN=BACUNI_01227 PE=4
           SV=1
          Length = 398

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = -1

Query: 333 VKTTSTSSLSQERVPAHVVALLNLFPAGLGLIILEVGQSKYGSFVTLH----GVYILKGL 166
           VKT     + +E +      LL   PAG+ L++L +      ++V ++    G+ +  GL
Sbjct: 184 VKTPPKQPVKREPISLDRFVLLKGIPAGIALLLLSIPYGMTSTYVAMYAKEIGITLNSGL 243

Query: 165 CFQSTGNGVALSRV 124
            F     G+A+SR+
Sbjct: 244 FFTFMAVGMAVSRM 257


>tr|Q6CMQ4|Q6CMQ4_KLULA KLLA0E18481p OS=Kluyveromyces lactis
           GN=KLLA0E18481g PE=4 SV=1
          Length = 464

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +1

Query: 112 GEKRNSRQGNTIPCRLEAQAFQNVHPMQGDKTPILGLANLKDDETKPCREEIQKGDNMSR 291
           GE+ +++QG+ +P  ++ Q+ Q+ H + G  +   G  N  +  + P +  +Q     + 
Sbjct: 18  GEQEHAQQGHGVPVSMQVQSPQSYHMLSGQHS--AGQVNSGNSNSVPAQSGVQSSQAGAG 75

Query: 292 HPL 300
           HP+
Sbjct: 76  HPM 78


>tr|A6L2I2|A6L2I2_BACV8 Putative transmembrane transport protein
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=BVU_2236 PE=4 SV=1
          Length = 398

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = -1

Query: 345 CSKNVKTTSTSSLSQERVPAHVVALLNLFPAGLGLIILEVGQSKYGSFVTLH----GVYI 178
           C+  VKTT    + +E +      LL   PAG  L++L +      ++V ++    G+  
Sbjct: 180 CASLVKTTYKPPVKREPISLDRFILLKGIPAGFSLLLLSIPYGMTTNYVAMYAKQIGIQS 239

Query: 177 LKGLCFQSTGNGVALSRV 124
             G  F     G+A+SR+
Sbjct: 240 STGFFFTFMALGMAVSRL 257


>tr|A0QQ67|A0QQ67_MYCS2 Putative beta-1,3-glucanase OS=Mycobacterium
           smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_0645
           PE=4 SV=1
          Length = 280

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
 Frame = +1

Query: 67  SFPSFWKLSTNPTEVGE--------KRNSRQGNTIPCRLEAQAF-QNVHPMQGD 201
           ++P+FW L+ NP   GE         R+   G T+  RL+  +F  N HP+  D
Sbjct: 146 AWPAFWLLNDNPVRGGEVDLVEWYGNRDWPSGTTVHARLDGTSFATNPHPVDSD 199


>tr|B7AHN1|B7AHN1_9BACE Putative uncharacterized protein
           OS=Bacteroides eggerthii DSM 20697 GN=BACEGG_01914 PE=4
           SV=1
          Length = 398

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = -1

Query: 345 CSKNVKTTSTSSLSQERVPAHVVALLNLFPAGLGLIILEVGQSKYGSFVTLH----GVYI 178
           C+  VKT     + +E +      LL   PAG+ L++L +      ++V ++    G+  
Sbjct: 180 CASLVKTPYKPPVKREPISLDRFILLKGIPAGISLLLLSIPYGMTTNYVAMYAKEIGINA 239

Query: 177 LKGLCFQSTGNGVALSRV 124
             G  F     G+A+SR+
Sbjct: 240 TTGFFFTFMAVGMAISRI 257


>tr|B3CI22|B3CI22_9BACE Putative uncharacterized protein
           OS=Bacteroides intestinalis DSM 17393 GN=BACINT_03108
           PE=4 SV=1
          Length = 398

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = -1

Query: 345 CSKNVKTTSTSSLSQERVPAHVVALLNLFPAGLGLIILEVGQSKYGSFVTLH----GVYI 178
           C+  VKT     + +E +      LL   PAG+ L++L +      ++V ++    G+  
Sbjct: 180 CASLVKTPYKPPVKREPISLDRFILLKGIPAGISLLLLSIPYGMTTNYVAMYAKQIGINA 239

Query: 177 LKGLCFQSTGNGVALSRV 124
             G  F     G+A+SR+
Sbjct: 240 TTGFFFTFMAIGMAISRI 257


>tr|Q1YE47|Q1YE47_MOBAS Carbohydrate kinase, thermoresistant
           gluconokinase OS=Manganese-oxidizing bacterium (strain
           SI85-9A1) GN=SI859A1_03571 PE=4 SV=1
          Length = 180

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 88  LSTNPTEVGEKRNSRQGNTIPCRLEAQAFQNVHPMQGDKTPILGLANLKDDE 243
           L+  P  VG +  +RQG+ +P  L    F  + P+Q D+  I+   +L  DE
Sbjct: 111 LTATPDLVGRRMATRQGHFMPVSLLKSQFDTLEPLQVDEDGIVVSVDLPADE 162