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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915498
Clone id YMU001_000072_D01
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTATTTTTGACAGCTATTAGGAGGTCCTTGTCTTGTCATATCTTTGCGACGTTACTGGT
GATATAACTTGCTTACACTCGCCCGTCTTTGTTAGATCCATCAAAGTGGTCTTTCTAGTT
GAAGTACCATAACTGCGTAGCATTGGATGCTTTACTTTTTGTGATTGGGGACTTGCATCT
ACACCTCAATCAGCAGTTTTTTGCTTCTGCTGCAGCTCACACCTTGTTGAGTTTGAGCAT
TCGATGCAAGCCATTTTTGTGGAACCAGGGTTTCAACGACCACGCTGAAGCCCAAGTCTT
CTCTTGATGGTGCTTAGCCAAGTGAGTATGAGATGGCATTCAAGATGCTAGACAAATAGA
AACTATTGTTCATCTGCTTGGTAAGTTCTTGATGAGGAAAATATCAAGATCCAGAATGCA
GACCATCATACGACTCCATAATCCGTGCTGGGGTGGGGAAGCATACATCGATGCTTGTTT
GTATGAACACTACAAAAGCAGTAAATTCAGGAGCTTATCGTGAAG
■■Homology search results ■■ -
sp_hit_id Q7N486
Definition sp|Q7N486|TRPB_PHOLL Tryptophan synthase beta chain OS=Photorhabdus luminescens subsp. laumondii
Align length 38
Score (bit) 30.4
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915498|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_D01.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7N486|TRPB_PHOLL Tryptophan synthase beta chain OS=Photorhab...    30   5.3  
sp|O94265|THI21_SCHPO Putative phosphomethylpyrimidine kinase 1 ...    30   9.1  
sp|Q1R7U3|FTSB_ECOUT Cell division protein ftsB homolog OS=Esche...    30   9.2  
sp|Q8FEJ4|FTSB_ECOL6 Cell division protein ftsB OS=Escherichia c...    30   9.2  
sp|Q0TEB0|FTSB_ECOL5 Cell division protein ftsB homolog OS=Esche...    30   9.2  
sp|A1AEU2|FTSB_ECOK1 Cell division protein ftsB homolog OS=Esche...    30   9.2  

>sp|Q7N486|TRPB_PHOLL Tryptophan synthase beta chain OS=Photorhabdus
           luminescens subsp. laumondii GN=trpB PE=3 SV=1
          Length = 396

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 405 QDPECRPSYDSIIRAGVGKHTSMLVCMNTTKAVNSGAY 518
           QDPE +  +  +++   G+ T++ +C N TK   +  Y
Sbjct: 36  QDPEFQQEFQDLLKNYAGRPTALTLCRNLTKGTKTRLY 73


>sp|O94265|THI21_SCHPO Putative phosphomethylpyrimidine kinase 1
           OS=Schizosaccharomyces pombe GN=SPBP8B7.17c PE=2 SV=1
          Length = 506

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 274 ETLVPQKWLASNAQTQQGVSCSRS 203
           E L+PQKWLAS  +T +G SC+ S
Sbjct: 213 EVLLPQKWLAS--KTARGTSCALS 234


>sp|Q1R7U3|FTSB_ECOUT Cell division protein ftsB homolog
           OS=Escherichia coli (strain UTI89 / UPEC) GN=ftsB PE=3
           SV=1
          Length = 103

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 267 WFHKNGLHRMLKLNKV*AAAEAKNC*LRCR 178
           WF KNG+H   ++N   AA +A N  L+ R
Sbjct: 20  WFGKNGIHDYTRVNNDVAAQQATNAKLKAR 49


>sp|Q8FEJ4|FTSB_ECOL6 Cell division protein ftsB OS=Escherichia coli
           O6 GN=ftsB PE=3 SV=1
          Length = 103

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 267 WFHKNGLHRMLKLNKV*AAAEAKNC*LRCR 178
           WF KNG+H   ++N   AA +A N  L+ R
Sbjct: 20  WFGKNGIHDYTRVNNDVAAQQATNAKLKAR 49


>sp|Q0TEB0|FTSB_ECOL5 Cell division protein ftsB homolog
           OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
           GN=ftsB PE=3 SV=1
          Length = 103

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 267 WFHKNGLHRMLKLNKV*AAAEAKNC*LRCR 178
           WF KNG+H   ++N   AA +A N  L+ R
Sbjct: 20  WFGKNGIHDYTRVNNDVAAQQATNAKLKAR 49


>sp|A1AEU2|FTSB_ECOK1 Cell division protein ftsB homolog
           OS=Escherichia coli O1:K1 / APEC GN=ftsB PE=3 SV=1
          Length = 103

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 267 WFHKNGLHRMLKLNKV*AAAEAKNC*LRCR 178
           WF KNG+H   ++N   AA +A N  L+ R
Sbjct: 20  WFGKNGIHDYTRVNNDVAAQQATNAKLKAR 49
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915498|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_D01.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******