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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915492
Clone id YMU001_000072_C06
Library
Length 445
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACAACTCAAATTTCATTCTGTCAAACAGAATGTTTGCCCATCCCACTTGTCTTCCACTT
TCTGCAGCCATGAGTATGCCATAGTTCTCCCTGCTCATATATTCTGATTTAACTAATAAG
AACACCCTTTCAATCAACCATCTGACCTGCTGCAATATGACCTGATTCTTCATTCCATAC
AATTGATAATAGTGTCTATTGCCCTGTGATTGTTCAAAAGCCTTAGTCATCTCTTTATCT
GTAGCTTTGACAAACTCGGTATCCTCCTGTGTAGGTATGTCAAATACCTCTGCCACCAAC
TCTTCAGTTAAATAGTTTTTAGCAAAGATTTGCCCATCATTAGCCTGTAACTGAGATAAG
TACACCTTGGCCATACTGTTTTGCCTCCAGGACATCCAAGGAAGCCTTGCAAAGTTCAAG
AGACCAATATTTCTCAACCAAGAAA
■■Homology search results ■■ -
sp_hit_id A8YUF8
Definition sp|A8YUF8|GLMM_LACH4 Phosphoglucosamine mutase OS=Lactobacillus helveticus (strain DPC 4571)
Align length 76
Score (bit) 30.4
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915492|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C06.
         (445 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8YUF8|GLMM_LACH4 Phosphoglucosamine mutase OS=Lactobacillus ...    30   3.4  
sp|Q61125|BKRB1_MOUSE B1 bradykinin receptor OS=Mus musculus GN=...    30   3.4  
sp|Q4L715|CLPX_STAHJ ATP-dependent Clp protease ATP-binding subu...    30   4.5  
sp|O80502|FBK47_ARATH F-box/Kelch-repeat protein At2g44630 OS=Ar...    30   5.9  
sp|Q833U3|LACA_ENTFA Galactose-6-phosphate isomerase subunit lac...    29   7.7  
sp|P47144|ECM27_YEAST Protein ECM27 OS=Saccharomyces cerevisiae ...    29   7.7  
sp|Q5FL35|GLMM_LACAC Phosphoglucosamine mutase OS=Lactobacillus ...    29   10.0 

>sp|A8YUF8|GLMM_LACH4 Phosphoglucosamine mutase OS=Lactobacillus
           helveticus (strain DPC 4571) GN=glmM PE=3 SV=1
          Length = 450

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
 Frame = -3

Query: 425 GLLNFARLPWMSWRQNSMAKVYLSQLQAN---DGQIFAKNYLTEELVAEVFDIPTQEDTE 255
           GL+N       SW+++      +++++ +   +G++  +   T++L+  + + PTQE+T+
Sbjct: 375 GLVNVPVKDKKSWKEHQPILDVIAEVEKDMNGNGRVLVRPSGTQDLLRVMAEGPTQEETD 434

Query: 254 -----FVKATDKEMTK 222
                 VK  +KEM K
Sbjct: 435 AYVDRIVKVVEKEMGK 450


>sp|Q61125|BKRB1_MOUSE B1 bradykinin receptor OS=Mus musculus
           GN=Bdkrb1 PE=2 SV=1
          Length = 334

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = -3

Query: 437 LRNIGLLNFARLPWMSWRQN-----SMAKVYLSQLQAND 336
           L N+ +L+F  LPW  W Q      ++A++YL+ L A+D
Sbjct: 52  LGNLLVLSFFLLPWRRWWQQRRQRLTIAEIYLANLAASD 90


>sp|Q4L715|CLPX_STAHJ ATP-dependent Clp protease ATP-binding subunit
           clpX OS=Staphylococcus haemolyticus (strain JCSC1435)
           GN=clpX PE=3 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = -3

Query: 395 MSWRQNSMAKVYLSQLQANDGQIFAKNYLTEELVAEVFDIPTQEDTEFVKATDK----EM 228
           + + + ++A V    ++   G    ++ + E L+  ++D+P+ ED   V  TDK    E+
Sbjct: 342 LEFTEEALAAVSEKAIERKTGARGLRSIIEEALIDIMYDVPSSEDVTKVVITDKTINDEV 401

Query: 227 TKAFEQSQGN 198
                 S+GN
Sbjct: 402 DPELYDSEGN 411


>sp|O80502|FBK47_ARATH F-box/Kelch-repeat protein At2g44630
           OS=Arabidopsis thaliana GN=At2g44630 PE=2 SV=1
          Length = 372

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = -3

Query: 389 WRQNSMAKVYLSQLQANDGQIFAKNYLT-----EELVAEVFDIPTQ--EDTEFVKATDK 234
           WRQ    +V   +L A  G +  K Y+      EE++AEVFD+ TQ  E     KA D+
Sbjct: 161 WRQGPSMQV--ERLSATVGLVGGKIYVIGGNRGEEILAEVFDLKTQTWEAAPIPKAKDR 217


>sp|Q833U3|LACA_ENTFA Galactose-6-phosphate isomerase subunit lacA
           OS=Enterococcus faecalis GN=lacA PE=3 SV=1
          Length = 142

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 22/93 (23%), Positives = 41/93 (44%)
 Frame = -3

Query: 320 KNYLTEELVAEVFDIPTQEDTEFVKATDKEMTKAFEQSQGNRHYYQLYGMKNQVILQQVR 141
           K YL +E V EV D       +F++AT     +  + ++     +  YG  + +   +++
Sbjct: 19  KQYLLQEKV-EVIDKSESASEDFIEATLAVAHEVLKDTESLGIVFDGYGAGSFMTAAKIK 77

Query: 140 WLIERVFLLVKSEYMSRENYGILMAAESGRQVG 42
            +I       +S YM+RE+    M     + VG
Sbjct: 78  GMIVAELSDERSAYMAREHNNARMITVGAKIVG 110


>sp|P47144|ECM27_YEAST Protein ECM27 OS=Saccharomyces cerevisiae
           GN=ECM27 PE=1 SV=1
          Length = 725

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 138 PSDLLQYDLILHSIQLIIVSIAL*LFKSLSHLF-ICSFDKLGILLCRYVKYLCH 296
           PSD+L YD  L+   L  + I L   +S++  F +CS   L +LL  ++ YL +
Sbjct: 421 PSDILSYDPTLNRYSLTTLPIILLFIQSITAPFLLCSI--LSVLLTYHLGYLVY 472


>sp|Q5FL35|GLMM_LACAC Phosphoglucosamine mutase OS=Lactobacillus
           acidophilus GN=glmM PE=3 SV=1
          Length = 452

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
 Frame = -3

Query: 392 SWRQNSMAKVYLSQLQ---ANDGQIFAKNYLTEELVAEVFDIPTQEDTE-----FVKATD 237
           SW+++      +++++   A +G++  +   T++L+  + + PTQE+T+      VK  +
Sbjct: 386 SWKEHQPILDVIAEVEKDMAGNGRVLVRPSGTQDLLRVMAEGPTQEETDAYVDRIVKVVE 445

Query: 236 KEM 228
           KEM
Sbjct: 446 KEM 448
tr_hit_id A0DJP1
Definition tr|A0DJP1|A0DJP1_PARTE Chromosome undetermined scaffold_53, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 115
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915492|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C06.
         (445 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0DJP1|A0DJP1_PARTE Chromosome undetermined scaffold_53, whol...    37   0.49 
tr|A0BJE7|A0BJE7_PARTE Chromosome undetermined scaffold_11, whol...    36   1.1  
tr|A9V1N9|A9V1N9_MONBE Predicted protein OS=Monosiga brevicollis...    35   2.4  
tr|Q14DY2|Q14DY2_STREQ RepB OS=Streptococcus equisimilis GN=repB...    33   5.4  
tr|A9UL23|A9UL23_STRPY RepB OS=Streptococcus pyogenes GN=repB PE...    33   5.4  
tr|A8SAU4|A8SAU4_9FIRM Putative uncharacterized protein OS=Faeca...    33   5.4  
tr|Q0H7S3|Q0H7S3_STREQ RepB OS=Streptococcus equisimilis GN=repB...    33   7.0  
tr|B3PMV0|B3PMV0_MYCA5 Hypothetical membrane protein OS=Mycoplas...    33   9.2  

>tr|A0DJP1|A0DJP1_PARTE Chromosome undetermined scaffold_53, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00017602001 PE=4 SV=1
          Length = 469

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
 Frame = -3

Query: 443 SWLRNIGLLNFARLPWMSWRQ-NSMAKVYLSQLQANDGQ-IFAKNYLTEELVAEVFDIPT 270
           +W+ +  +  F R  W+S++  N  +   L +++  DG  +   N + +EL+  V  I T
Sbjct: 38  NWMHSFPI--FVRTSWISYQNGNYKSDARLEEIRVQDGMGVMMTNEVKQELITVVTKIVT 95

Query: 269 QEDTEFVKATDKEMTKAFEQSQGNRHYYQLYGMKNQVILQQVRWLIERVFLLVKS 105
           +     V  TDK + K  E    N+   QL   K Q+   +++ L+ +  L+ K+
Sbjct: 96  ENQQIRVLVTDKIVQKFME----NKTLKQLSTQKQQLRYYKIKILLLKCSLVKKN 146


>tr|A0BJE7|A0BJE7_PARTE Chromosome undetermined scaffold_11, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00005037001 PE=4 SV=1
          Length = 2123

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
 Frame = -3

Query: 212 QSQGNRHYYQLY--------GMKNQVILQQVRWLIERVFLLVKS----EYMSRENYGILM 69
           Q + N++Y QLY        G+ NQ+I QQ++ L E++F  + +    +  ++EN+  ++
Sbjct: 433 QEELNKNYIQLYQIQNLSSKGINNQLIYQQIKLLQEQIFNQIANHEEFKPFNQENFIQIL 492

Query: 68  AAESGRQVGWANILFDRMKFE 6
             E   ++   NIL   +K E
Sbjct: 493 RTEDQEELQKLNILLQEIKDE 513


>tr|A9V1N9|A9V1N9_MONBE Predicted protein OS=Monosiga brevicollis
           GN=26209 PE=4 SV=1
          Length = 133

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/77 (31%), Positives = 44/77 (57%)
 Frame = +1

Query: 52  LPLSAAMSMP*FSLLIYSDLTNKNTLSINHLTCCNMT*FFIPYN***CLLPCDCSKALVI 231
           L LS ++S+   SLL +S+  N+ TLS++H+        F P++      P   + +L +
Sbjct: 28  LSLSLSLSLSLLSLLSFSNRPNQFTLSLSHVVVVLFLCVFAPFS----NRPHQFNLSLSL 83

Query: 232 SLSVALTNSVSSCVGMS 282
           SLS++L+ S+S  + +S
Sbjct: 84  SLSLSLSLSLSLSLSLS 100


>tr|Q14DY2|Q14DY2_STREQ RepB OS=Streptococcus equisimilis GN=repB
           PE=4 SV=1
          Length = 208

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -3

Query: 239 DKEMTKAFEQSQGNRHYYQLYGMKNQVILQQVRWLIERVF----LLVKSEYMSRENYGIL 72
           DK+ +    Q     HY+ LY  KN V    VRW I++      L +    ++ EN  + 
Sbjct: 40  DKDKSNVEGQQYKKPHYHVLYIAKNPVTADSVRWKIKKTLGEKSLALVQVVLNVENTYLY 99

Query: 71  MAAESGRQVGWANILFDRMKFEL 3
           +  ES   +     ++DR   +L
Sbjct: 100 LTHESKDAIAKKKHVYDRADIKL 122


>tr|A9UL23|A9UL23_STRPY RepB OS=Streptococcus pyogenes GN=repB PE=4
           SV=1
          Length = 208

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -3

Query: 239 DKEMTKAFEQSQGNRHYYQLYGMKNQVILQQVRWLIERVF----LLVKSEYMSRENYGIL 72
           DK+ +    Q     HY+ LY  KN V    VRW I++      L +    ++ EN  + 
Sbjct: 40  DKDKSNVEGQQYKKPHYHVLYIAKNPVTADSVRWKIKKTLGEKSLALVQVVLNVENTYLY 99

Query: 71  MAAESGRQVGWANILFDRMKFEL 3
           +  ES   +     ++DR   +L
Sbjct: 100 LTHESKDAIAKKKHVYDRADIKL 122


>tr|A8SAU4|A8SAU4_9FIRM Putative uncharacterized protein
           OS=Faecalibacterium prausnitzii M21/2
           GN=FAEPRAM212_01472 PE=3 SV=1
          Length = 428

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = -3

Query: 320 KNYLTEELVAEVF-DIPTQ---EDTEFVKATDKEMTKAFEQSQGNRHYYQLYGMKNQVIL 153
           K +LTE +  ++  D+PT     D + ++   + + KAF  ++G + Y+ +  + N VIL
Sbjct: 4   KPFLTEAMAQQIIEDVPTPFHVYDEKGIRENVRRINKAFSWNKGFKEYFAVKALPNPVIL 63

Query: 152 Q 150
           Q
Sbjct: 64  Q 64


>tr|Q0H7S3|Q0H7S3_STREQ RepB OS=Streptococcus equisimilis GN=repB
           PE=4 SV=1
          Length = 208

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -3

Query: 239 DKEMTKAFEQSQGNRHYYQLYGMKNQVILQQVRWLIERVF----LLVKSEYMSRENYGIL 72
           DK+ +    Q     HY+ LY  KN V    +RW I++      L +    ++ EN  + 
Sbjct: 40  DKDKSNVEGQQYKKPHYHVLYIAKNPVTADSIRWKIKKTLGEKSLALVQVVLNVENTYLY 99

Query: 71  MAAESGRQVGWANILFDRMKFEL 3
           +  ES   +     ++DR   +L
Sbjct: 100 LTHESKDAIAKKKHVYDRADIKL 122


>tr|B3PMV0|B3PMV0_MYCA5 Hypothetical membrane protein OS=Mycoplasma
            arthritidis (strain 158L3-1) GN=MARTH_orf536 PE=4 SV=1
          Length = 1178

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
 Frame = -3

Query: 287  VFDIPTQEDTEFVKATDKEMTKAFE---QSQGNRHYYQLYGMKNQVILQQVRWLIERVFL 117
            + D+ T  D EF+KA + E   +FE   Q + NR++ ++  ++N+++    + L      
Sbjct: 891  ICDVLTNNDQEFMKANNLEYLYSFESTAQGENNRYFTKMADLENELLANNAQKL------ 944

Query: 116  LVKSEYMSRENYGILMAAESGRQVGWANILFDRMK 12
              K  Y S  + G +   +  + +     LF+++K
Sbjct: 945  --KDWYKS--SSGTINILDKSKNITNVKDLFEKLK 975