BP915442 [AcEST]

BP915442
Clone id	YMU001_000071_F02
Library	YMU01
Length	274
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000071_F02.
Accession	BP915442
Tissue type	prothallium
Developmental stage	-
Contig ID	CL2832Contig1
Sequence	TGGAAGCCAATGGGGCACTCTCCATTAGCCGGCTGCAAACAACCGACAAATAGGTTGTCA ACTTTATACAATCTATAACACACCTTGCTCAAACAGAAGAGGTAGTGAATCTGCATGCTC AAAGGCTTTGACTAGTTGCTTCGTTACTCTAGAGTAGTCTAGGGCTAATCTTATTTCTGT TTTTACAATTGTAAGGAACAAGTACCTTGCAAAACCTTCATTATCTCTTTCAGTATTCCT TTCAATATTGGAGTTTTGACAGATTTTCCCGGCT
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q12TA2
Definition	sp\|Q12TA2\|SMG_SHEDO Protein smg homolog OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Align length	38
Score (bit)	29.6
E-value	4.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP915442\|Adiantum capillus-veneris mRNA, clone: YMU001_000071_F02. (274 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q12TA2\|SMG_SHEDO Protein smg homolog OS=Shewanella denitrific... 30 4.9 >sp\|Q12TA2\|SMG_SHEDO Protein smg homolog OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=smg PE=3 SV=1 Length = 157 Score = 29.6 bits (65), Expect = 4.9 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -2 Query: 204 YLFLTIVKTEIRLALDYSRVTKQLVKA-FEHADSLPLL 94 YLF V +EI L +D +TK+L +A F AD L L Sbjct: 7 YLFENYVHSEIELLVDEDELTKELTRAGFHQADILKAL 44
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	B8CPU2
Definition	tr\|B8CPU2\|B8CPU2_9GAMM GGDEF domain protein OS=Shewanella piezotolerans WP3
Align length	50
Score (bit)	33.5
E-value	5.5
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP915442\|Adiantum capillus-veneris mRNA, clone: YMU001_000071_F02. (274 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|B8CPU2\|B8CPU2_9GAMM GGDEF domain protein OS=Shewanella piezot... 33 5.5 >tr\|B8CPU2\|B8CPU2_9GAMM GGDEF domain protein OS=Shewanella piezotolerans WP3 GN=swp_3090 PE=4 SV=1 Length = 321 Score = 33.5 bits (75), Expect = 5.5 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -2 Query: 255 NSNIERNTERDNEGFARYLFLTIVKTEIRLALDYSRVTKQLVKAFEHADS 106 NSN+ER + +NEGF+ L++VK + A D T + HA S Sbjct: 95 NSNVERLNKIENEGFSIDEVLSLVKNLVSDAADIKNSTLHFTEQLAHAQS 144