| BP915415 |
| Clone id |
YMU001_000071_C09 |
| Library |
YMU01 |
| Length |
325 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000071_C09. |
| Accession |
BP915415 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
CTCTTATATACAACCACCACCTCTATAGCAATTGCACCAGTAATGCTGGTAACATGGACC
CACAAACGTAGTGCAATTTGCAAGACCACAAACTGATGTGGTGGTTCCTCATTAACACAC
CCCCTATGATGTGCTATCGGTCCAGATGTAGGGAGAGTATGACCAATCATGTCATGACAT
ACCATCTGCTAGCATGTAACGTAATCTACATTGATGCTCTTCTTTGGCGAACCTGGAAGG
ATGGCTTGGTTTATTTGTTTGTTTTACTGGGCATGTCCTTGCTTTCTGCATCTCTGGTAC
TCTTATGATTCTTCATTGTGCCTTC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
A3QBM7 |
| Definition |
sp|A3QBM7|UPPP_SHELP Undecaprenyl-diphosphatase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) |
| Align length |
56 |
| Score (bit) |
37.7 |
| E-value |
0.018 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B8EBV1 |
| Definition |
tr|B8EBV1|B8EBV1_9GAMM Undecaprenol kinase OS=Shewanella baltica OS223 |
| Align length |
54 |
| Score (bit) |
35.4 |
| E-value |
1.4 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915415|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_C09.
(325 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B8EBV1|B8EBV1_9GAMM Undecaprenol kinase OS=Shewanella baltica... 35 1.4
tr|A2V2A1|A2V2A1_SHEPU Putative undecaprenol kinase OS=Shewanell... 35 1.4
tr|Q03ZQ5|Q03ZQ5_LEUMM Type II secretory pathway, prepilin signa... 35 1.9
tr|Q6JEA9|Q6JEA9_YARLI DNA-directed RNA polymerase (Fragment) OS... 34 4.1
tr|Q6CBQ3|Q6CBQ3_YARLI DNA-directed RNA polymerase OS=Yarrowia l... 34 4.1
tr|B8Q2M9|B8Q2M9_9ASCO RNA polymerase II largest subunit (Fragme... 34 4.1
tr|A9EIW1|A9EIW1_9GAMM Undecaprenyl pyrophosphate phosphatase OS... 33 5.4
tr|A0CB97|A0CB97_PARTE Chromosome undetermined scaffold_164, who... 33 5.4
tr|A7ABW2|A7ABW2_9PORP Putative uncharacterized protein OS=Parab... 33 9.2
>tr|B8EBV1|B8EBV1_9GAMM Undecaprenol kinase OS=Shewanella baltica
OS223 GN=Sbal223_3161 PE=4 SV=1
Length = 266
Score = 35.4 bits (80), Expect = 1.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 81 QDHKLMWWFLINTPPMMCYRSRCRESMTNHVMTYHLLACNVIYIDALLWRTWKD 242
+D KL WW ++ T P + + ++ + H+ ++A + LLW W D
Sbjct: 81 EDSKLAWWIILATLPAVFFGFLAKDFIATHLRNAEVIAVTTVVFGLLLW--WAD 132
>tr|A2V2A1|A2V2A1_SHEPU Putative undecaprenol kinase OS=Shewanella
putrefaciens 200 GN=Sput200DRAFT_3539 PE=4 SV=1
Length = 266
Score = 35.4 bits (80), Expect = 1.4
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 84 DHKLMWWFLINTPPMMCYRSRCRESMTNHVMTYHLLACNVIYIDALLWRTWKD 242
D KL WW ++ T P + + ++ + H+ + ++A I LLW W D
Sbjct: 82 DSKLAWWIILATLPAVFFGFMAKDFIETHLRSAEVIAVTTIVFGLLLW--WAD 132
>tr|Q03ZQ5|Q03ZQ5_LEUMM Type II secretory pathway, prepilin signal
peptidase PulO OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=LEUM_0186
PE=4 SV=1
Length = 219
Score = 35.0 bits (79), Expect = 1.9
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 72 CNLQDHKLMWWFLINTPPMMCYRSRCRESMTNHVMTYHLLACNVIYIDALLWR---TWKD 242
C DH L W+ +I R++CR + Y + + I I LLW TW
Sbjct: 37 CFYCDHNLAWFDIIPVISACVLRNKCRYCHAHFGHYYAIFELSYILIGTLLWATPVTWIT 96
Query: 243 GLVYLFV 263
G++ LF+
Sbjct: 97 GVLLLFL 103
>tr|Q6JEA9|Q6JEA9_YARLI DNA-directed RNA polymerase (Fragment)
OS=Yarrowia lipolytica PE=3 SV=1
Length = 210
Score = 33.9 bits (76), Expect = 4.1
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 263 NKQINQAILPGSPKKSINVDYVTC-*QMVCHDMIGHTLPTSGPIAH-HRGCVNEEPPHQF 90
NKQ QAI PK+ N + C +MVC + SG + H H GC N +P
Sbjct: 35 NKQFAQAIRIRDPKRRFNAVWSLCKTKMVCETDVPTEDDGSGVVKHSHGGCGNIQP---- 90
Query: 89 VVLQIALRLW 60
V + L+LW
Sbjct: 91 TVRRDGLKLW 100
>tr|Q6CBQ3|Q6CBQ3_YARLI DNA-directed RNA polymerase OS=Yarrowia
lipolytica GN=YALI0C16566g PE=3 SV=2
Length = 1750
Score = 33.9 bits (76), Expect = 4.1
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 263 NKQINQAILPGSPKKSINVDYVTC-*QMVCHDMIGHTLPTSGPIAH-HRGCVNEEPPHQF 90
NKQ QAI PK+ N + C +MVC + SG + H H GC N +P
Sbjct: 121 NKQFAQAIRIRDPKRRFNAVWSLCKTKMVCETDVPTEDDGSGVVKHSHGGCGNIQP---- 176
Query: 89 VVLQIALRLW 60
V + L+LW
Sbjct: 177 TVRRDGLKLW 186
>tr|B8Q2M9|B8Q2M9_9ASCO RNA polymerase II largest subunit (Fragment)
OS=Candida galli GN=RPB1 PE=4 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 4.1
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 263 NKQINQAILPGSPKKSINVDYVTC-*QMVCHDMIGHTLPTSGPIAH-HRGCVNEEPPHQF 90
NKQ QAI PK+ N + C +MVC + SG + H H GC N +P
Sbjct: 40 NKQFAQAIRIRDPKRRFNAVWSLCKTKMVCETDVPTEDDGSGVVKHSHGGCGNIQP---- 95
Query: 89 VVLQIALRLW 60
V + L+LW
Sbjct: 96 TVRRDGLKLW 105
>tr|A9EIW1|A9EIW1_9GAMM Undecaprenyl pyrophosphate phosphatase
OS=Shewanella benthica KT99 GN=uppP PE=4 SV=1
Length = 266
Score = 33.5 bits (75), Expect = 5.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 84 DHKLMWWFLINTPPMMCYRSRCRESMTNHVMTYHLLACNVIYIDALLWRTWKDGL 248
+ KL WW ++ T P + ++ + H+ ++A I LLW W D L
Sbjct: 82 ESKLAWWIILATIPAVIVGFAAKDFIATHLRNIEVVATTTIVFGLLLW--WADRL 134
>tr|A0CB97|A0CB97_PARTE Chromosome undetermined scaffold_164, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00036847001 PE=4 SV=1
Length = 1417
Score = 33.5 bits (75), Expect = 5.4
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +3
Query: 9 YNHHLYSNCTSNAGNMDPQT*CNLQDHKLMWWFLINTPPMMCYRSRCRESM--------T 164
Y H+L++N S + P T C+LQD + +F + C+ES+
Sbjct: 585 YQHNLFNNQNSKFKLITPLT-CSLQDFGIFGYFYNQC--RIAAIKNCKESIYNKCVQCDD 641
Query: 165 NHVMTYHLLACNVIYIDALL 224
N+V+ Y+ LAC I D L+
Sbjct: 642 NYVLEYNRLACTPICNDGLM 661
>tr|A7ABW2|A7ABW2_9PORP Putative uncharacterized protein
OS=Parabacteroides merdae ATCC 43184 GN=PARMER_00870
PE=4 SV=1
Length = 613
Score = 32.7 bits (73), Expect = 9.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 114 NTPPMMCYRSRCRESMTNHVMTYHLLACNVIYIDALLWRTWKD 242
N P + ++ RE + N + LL ++IY D L W+TWKD
Sbjct: 514 NVPTTVMGQADMRERIRNE-RYWELLGEDLIYFDELRWKTWKD 555
|