BP915367
Clone id YMU001_000070_F10
Library
Length 478
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CACGAGGAGACCCCCGGTTTCTTGTAATACACTGTGAAGAGATGCCAGCTGCGCCTGAGG
AAGATGGTGGCGTGTTAGAGTCAACGAACAGTCTCTTACCCTCTGGAAACATGAATGAGT
AGTGCCTTACTACAATGGGTAAACGTTTTTTCTCCTCAAGTATGCATATTCACACCATCA
GCAACATGCAAGAAGATGACTTTCCTATATCGAATGGGCTCTTGCTTTCTCTGCTCTTCA
TTACCCGAAGAAAACTTTCCTGCTCAGTTTTGCAACTTCATGTGTTGTTTGGTTTTAAAA
GATCAAAAACATTTTGCTCACAGCCTCTGGGCCAGTAGCTTCAAAATGATCTACTTGCAT
GTGTGTTGTACTGTATTCTTGGCATAGACCAGAAGTTCAGAGTAGAGCACAGTAAGGGTA
CTTATCACTCAACAAGGATATCGCAGCTAGTCCATGGTGGACTTGTATACAACTCATC
■■Homology search results ■■ -
sp_hit_id Q2SRV0
Definition sp|Q2SRV0|RNH2_MYCCT Ribonuclease HII OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)
Align length 77
Score (bit) 30.8
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915367|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_F10.
(478 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2SRV0|RNH2_MYCCT Ribonuclease HII OS=Mycoplasma capricolum s... 31 3.2
sp|Q502G2|TM41A_DANRE Transmembrane protein 41A OS=Danio rerio G... 30 7.4

>sp|Q2SRV0|RNH2_MYCCT Ribonuclease HII OS=Mycoplasma capricolum
subsp. capricolum (strain California kid / ATCC 27343 /
NCTC 10154) GN=rnhB PE=3 SV=1
Length = 207

Score = 30.8 bits (68), Expect = 3.2
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +3

Query: 165 HIHTISNMQEDDFPISNGLLLSLLFITRRKLSCSVLQLHVLFGFKRSKTFCSQPLGQ*LQ 344
+I T+S ++ DD S L +TR K+ Q++ +GFK K +C+ +
Sbjct: 125 NIKTLSIIKGDDNSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCT-------K 177

Query: 345 NDLLACVLYCILGIDQK 395
LLA Y +L I +K
Sbjct: 178 KHLLAIQKYGVLDIHRK 194


>sp|Q502G2|TM41A_DANRE Transmembrane protein 41A OS=Danio rerio
GN=tmem41a PE=2 SV=1
Length = 281

Score = 29.6 bits (65), Expect = 7.4
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Frame = -2

Query: 471 CIQVHHGLAAISLLSDKYPY----------CALL*TSGLCQEYSTTHMQVDHFEATG 331
C+Q L+ IS L D + + C L L ++YST H+ +D E G
Sbjct: 217 CVQTGSMLSQISSLDDLFSWSVVLKLLLTACVALLPGALIRKYSTRHLHLDGLETNG 273


tr_hit_id Q0AH91
Definition tr|Q0AH91|Q0AH91_NITEC Lipopolysaccharide biosynthesis OS=Nitrosomonas eutropha (strain C91)
Align length 109
Score (bit) 33.9
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915367|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_F10.
(478 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0AH91|Q0AH91_NITEC Lipopolysaccharide biosynthesis OS=Nitros... 34 4.2

>tr|Q0AH91|Q0AH91_NITEC Lipopolysaccharide biosynthesis
OS=Nitrosomonas eutropha (strain C91) GN=Neut_1035 PE=4
SV=1
Length = 660

Score = 33.9 bits (76), Expect = 4.2
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = +3

Query: 147 FFSSSMHIHTISNMQEDDFPISNGLLLSLLFITRRKLSCSVLQLHVLFGFKRSKTFC--S 320
F S + I+N+Q DD + N LL T R +S + LH SK C +
Sbjct: 511 FLLSGLTPDEIANLQNDDVDLENNLL------TIRNVSTRTIPLHPALATLYSKHGCCLT 564

Query: 321 QPLGQ*LQNDLLACVLYCI-LGIDQKFRVEHSKGTYHSTRISQLVHGGL 464
P G L + L +L C+ + D S T T I L+ G+
Sbjct: 565 DPTGNRLGREDLEALLTCLQIDADLLITSRISAETLRQTYILYLIRQGM 613