BP915316
Clone id YMU001_000070_B03
Library
Length 269
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTACAATACTCTACATACAACATTAATTAAAAGTTTTTTCGCATACTCTCCAATTCACTT
TGCTTCTGTTTTCTTTGCATCTAGCTTGCTTCGCCTCCCCTATCTTTGACATGCAAAGTG
TTCAGGCTTAAGGTATCCTTCCAGTAACTCTTTGTACAGCAGCCTTGATTGCCATCTCGG
TCTAGGGCTGTTTTCACATGCACCTCTTGTACCTGACGACCAGCTCTGGCCAAAAGCGTG
AAATTTCCATTCTCTACGGGCGCACTGGA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915316|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_B03.
(269 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id A9TN20
Definition tr|A9TN20|A9TN20_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 33
Score (bit) 50.8
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915316|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_B03.
(269 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TN20|A9TN20_PHYPA Predicted protein (Fragment) OS=Physcomit... 51 2e-06
tr|A9NXR9|A9NXR9_PICSI Putative uncharacterized protein OS=Picea... 49 3e-05
tr|A9SNI7|A9SNI7_PHYPA Predicted protein OS=Physcomitrella paten... 46 7e-05
tr|Q75LC1|Q75LC1_ORYSJ Putative ribosomal S1 protein (With alter... 44 3e-04
tr|B8AN85|B8AN85_ORYSI Putative uncharacterized protein OS=Oryza... 44 3e-04
tr|B4F9P4|B4F9P4_MAIZE Putative uncharacterized protein OS=Zea m... 43 4e-04
tr|B6TZ31|B6TZ31_MAIZE RNA binding S1 OS=Zea mays PE=2 SV=1 42 6e-04
tr|Q9LK47|Q9LK47_ARATH Similarity to 30s ribosomal protein s1 (A... 44 0.003
tr|A7Q9K4|A7Q9K4_VITVI Chromosome chr5 scaffold_67, whole genome... 44 0.003
tr|A5BZI0|A5BZI0_VITVI Putative uncharacterized protein OS=Vitis... 44 0.003
tr|A4RTR2|A4RTR2_OSTLU Putative mitochondrial ribosomal protein ... 42 0.020
tr|A9SX28|A9SX28_PHYPA Predicted protein OS=Physcomitrella paten... 36 0.83

>tr|A9TN20|A9TN20_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147942 PE=4 SV=1
Length = 298

Score = 50.8 bits (120), Expect(2) = 2e-06
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
++APVE G F+LLARAGRQVQEV + T+LDR+G
Sbjct: 253 ANAPVEGGKFSLLARAGRQVQEVQLNTSLDREG 285



Score = 23.9 bits (50), Expect(2) = 2e-06
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2

Query: 169 IKAAVQRVTGRIP 131
IK AVQRV GR+P
Sbjct: 286 IKEAVQRVIGRVP 298


>tr|A9NXR9|A9NXR9_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 381

Score = 49.3 bits (116), Expect(2) = 3e-05
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
S+ PVE G FTLLARAGRQVQEV+++T+L+R G
Sbjct: 336 SNMPVEGGKFTLLARAGRQVQEVYLETSLERVG 368



Score = 21.6 bits (44), Expect(2) = 3e-05
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2

Query: 175 MAIKAAVQRVTGRI 134
+ IK AVQRV GR+
Sbjct: 367 VGIKQAVQRVMGRV 380


>tr|A9SNI7|A9SNI7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_132762 PE=4 SV=1
Length = 299

Score = 45.8 bits (107), Expect(2) = 7e-05
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
++APVE+G F++LAR GRQVQE+ + + LDR+G
Sbjct: 254 ANAPVEDGKFSILARVGRQVQEIQLNSNLDREG 286



Score = 23.5 bits (49), Expect(2) = 7e-05
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2

Query: 169 IKAAVQRVTGRIP 131
IK AVQRV GR P
Sbjct: 287 IKVAVQRVAGRFP 299


>tr|Q75LC1|Q75LC1_ORYSJ Putative ribosomal S1 protein (With
alternative splicing) (S1 RNA binding domain containing
protein, expressed) OS=Oryza sativa subsp. japonica
GN=OSJNBa0032G11.21 PE=4 SV=1
Length = 379

Score = 43.5 bits (101), Expect(2) = 3e-04
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
SS P ++ F LLARAGRQVQE+++ T+LD++G
Sbjct: 334 SSVPAKDNQFKLLARAGRQVQELYLTTSLDQEG 366



Score = 23.9 bits (50), Expect(2) = 3e-04
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2

Query: 169 IKAAVQRVTGRIP 131
IK AVQRV GR+P
Sbjct: 367 IKKAVQRVLGRVP 379


>tr|B8AN85|B8AN85_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_14295 PE=4 SV=1
Length = 379

Score = 43.5 bits (101), Expect(2) = 3e-04
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
SS P ++ F LLARAGRQVQE+++ T+LD++G
Sbjct: 334 SSVPAKDNQFKLLARAGRQVQELYLTTSLDQEG 366



Score = 23.9 bits (50), Expect(2) = 3e-04
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2

Query: 169 IKAAVQRVTGRIP 131
IK AVQRV GR+P
Sbjct: 367 IKKAVQRVLGRVP 379


>tr|B4F9P4|B4F9P4_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 366

Score = 42.7 bits (99), Expect(2) = 4e-04
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
S+ ++ FTLLARAGRQVQEV++ T+LD++G
Sbjct: 321 SNVQAKDNRFTLLARAGRQVQEVYLTTSLDQEG 353



Score = 23.9 bits (50), Expect(2) = 4e-04
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2

Query: 169 IKAAVQRVTGRIP 131
IK AVQRV GR+P
Sbjct: 354 IKKAVQRVLGRVP 366


>tr|B6TZ31|B6TZ31_MAIZE RNA binding S1 OS=Zea mays PE=2 SV=1
Length = 366

Score = 42.4 bits (98), Expect(2) = 6e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
S+ ++ FTLLARAGRQVQEV++ T+LD +G
Sbjct: 321 SNVQAKDNKFTLLARAGRQVQEVYLTTSLDHEG 353



Score = 23.9 bits (50), Expect(2) = 6e-04
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2

Query: 169 IKAAVQRVTGRIP 131
IK AVQRV GR+P
Sbjct: 354 IKKAVQRVLGRVP 366


>tr|Q9LK47|Q9LK47_ARATH Similarity to 30s ribosomal protein s1
(At3g23700/MYM9_3) OS=Arabidopsis thaliana GN=At3g23700
PE=2 SV=1
Length = 392

Score = 44.3 bits (103), Expect = 0.003
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
S+ P +G F LLARAGRQVQE+H+ T+L++ G
Sbjct: 347 SNTPPSDGKFVLLARAGRQVQEIHLTTSLEQGG 379


>tr|A7Q9K4|A7Q9K4_VITVI Chromosome chr5 scaffold_67, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00033518001
PE=4 SV=1
Length = 390

Score = 44.3 bits (103), Expect = 0.003
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
S+AP + FTLLARAGRQVQE+ + T+LD++G
Sbjct: 345 SNAPAVDKQFTLLARAGRQVQEIQLTTSLDQEG 377


>tr|A5BZI0|A5BZI0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_006784 PE=4 SV=1
Length = 418

Score = 44.3 bits (103), Expect = 0.003
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = -1

Query: 269 SSAPVENGNFTLLARAGRQVQEVHVKTALDRDG 171
S+AP + FTLLARAGRQVQE+ + T+LD++G
Sbjct: 373 SNAPAVDKQFTLLARAGRQVQEIQLTTSLDQEG 405