BP915293 |
Clone id |
YMU001_000069_G11 |
Library |
YMU01 |
Length |
431 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000069_G11. |
Accession |
BP915293 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAGACCTAAGACAGCCTGTTGTTGTCACTATCTCCCCTGTAAGACAGCAGAGAGTCAGAT GGCCATTCTTAGGCATGGCTTCAAGAAGTATCCAACCAGCAATCCACTGGCTGACAATGT AACACAAGGTGTCGAACAAGAAGCTTGGAAAACCCTGTTTACATGAAGAGCCAAAGTCTT GTGACCCTTCTGAGGGATAAGGCCACTAGTAGGGCTTTGGGAATGATCGAATCAAATTGG ACCACCAGGAAAAGTTGCAAAGTTCCCCATTGGTCGGTATCAACGAGGGTGTGCCCTTAC CATTTGAGCCCCTTATGCAAAGCTTTGATGCGAGGGCTCGCTTGTCATTCATATGGTGGT GGCACCCTGAGAAAAGCACAAAATTCTCACTTGCCCAGTTTTGAGTGTCCCCTTCTTAAA AATGCTTAAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
B2RRF6 |
Definition |
sp|B2RRF6|ZF518_MOUSE Zinc finger protein 518 OS=Mus musculus |
Align length |
50 |
Score (bit) |
33.1 |
E-value |
0.49 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915293|Adiantum capillus-veneris mRNA, clone: YMU001_000069_G11. (431 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|B2RRF6|ZF518_MOUSE Zinc finger protein 518 OS=Mus musculus GN... 33 0.49 sp|P08046|EGR1_MOUSE Early growth response protein 1 OS=Mus musc... 32 1.1 sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protei... 31 1.9 sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protei... 30 3.2 sp|P08154|EGR1_RAT Early growth response protein 1 OS=Rattus nor... 30 3.2 sp|Q29W20|EGR1_BOVIN Early growth response protein 1 OS=Bos taur... 30 4.2 sp|Q499R0|ZF518_RAT Zinc finger protein 518 OS=Rattus norvegicus... 30 5.5 sp|Q4K9T4|NUOCD_PSEF5 NADH-quinone oxidoreductase subunit C/D OS... 30 5.5 sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS... 30 5.5 sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS... 30 5.5 sp|P97535|PLA1A_RAT Phospholipase A1 member A OS=Rattus norvegic... 29 7.1 sp|Q9D2L9|F111A_MOUSE Protein FAM111A OS=Mus musculus GN=Fam111a... 29 9.3 sp|P18146|EGR1_HUMAN Early growth response protein 1 OS=Homo sap... 29 9.3 sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS... 29 9.3
>sp|B2RRF6|ZF518_MOUSE Zinc finger protein 518 OS=Mus musculus GN=Znf518 PE=1 SV=1 Length = 1478
Score = 33.1 bits (74), Expect = 0.49 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +1
Query: 142 SLENPVYMKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRV 291 S E PVY+ +S +LR KA +E N+ RK+CK + TR+ Sbjct: 1213 SSEEPVYISERSETRVLRGKANCA----VERNFNKRKTCKNKFAKIKTRI 1258
>sp|P08046|EGR1_MOUSE Early growth response protein 1 OS=Mus musculus GN=Egr1 PE=1 SV=2 Length = 533
Score = 32.0 bits (71), Expect = 1.1 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Frame = -2
Query: 349 NDKRALASKLCIRGSNGKGTPSLI--PTNGELCNF------SWWSNLIRSFPKPY*WPYP 194 +D+R +K+ +R + K S++ P L ++ S+ S SFP P Y Sbjct: 406 SDERKRHTKIHLRQKDKKADKSVVASPAASSLSSYPSPVATSYPSPATTSFPSPVPTSYS 465
Query: 193 SEGSQDFGSSCKQGFPS 143 S GS + S GFPS Sbjct: 466 SPGSSTYPSPAHSGFPS 482
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 Length = 577
Score = 31.2 bits (69), Expect = 1.9 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = -2
Query: 328 SKLCIRGSNGKGTPSLIPTNGELCNFSWWSNLIRSFPKPY*WPYPSEGSQDFGSSCKQGF 149 S+ R GKG P + P++ +LC +W R+F S GS D+ + G Sbjct: 14 SRFVHRNLQGKGNPRIAPSSIDLCGMCYWG---RAF---------SSGSGDYREILRNGL 61
Query: 148 PSFLFD 131 S D Sbjct: 62 HSMKLD 67
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 Length = 634
Score = 30.4 bits (67), Expect = 3.2 Identities = 18/66 (27%), Positives = 28/66 (42%) Frame = -2
Query: 328 SKLCIRGSNGKGTPSLIPTNGELCNFSWWSNLIRSFPKPY*WPYPSEGSQDFGSSCKQGF 149 S++ R GKG P + P++ +LC +W R+F S GS D+ + G Sbjct: 14 SRIVHRNLQGKGNPRIAPSSIDLCGMCYWG---RAF---------SSGSGDYREILRNGL 61
Query: 148 PSFLFD 131 D Sbjct: 62 HDMKLD 67
>sp|P08154|EGR1_RAT Early growth response protein 1 OS=Rattus norvegicus GN=Egr1 PE=1 SV=2 Length = 508
Score = 30.4 bits (67), Expect = 3.2 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Frame = -2
Query: 349 NDKRALASKLCIRGSNGKGTPSLIPTNG--ELCNF------SWWSNLIRSFPKPY*WPYP 194 +D+R +K+ +R + K S++ ++ L ++ S+ S SFP P Y Sbjct: 381 SDERKRHTKIHLRQKDKKADKSVVASSAASSLSSYPSPVATSYPSPATTSFPSPVPTSYS 440
Query: 193 SEGSQDFGSSCKQGFPS 143 S GS + S GFPS Sbjct: 441 SPGSSTYPSPAHSGFPS 457
>sp|Q29W20|EGR1_BOVIN Early growth response protein 1 OS=Bos taurus GN=EGR1 PE=2 SV=1 Length = 540
Score = 30.0 bits (66), Expect = 4.2 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = -2
Query: 361 HHHMNDKRALASKLCIRGSNGKGTPSLIPTN-GELCNFSWWSNLIRSFPKPY*WPYPSEG 185 H DK+A S S+ PS + T+ S+ S S+P P Y S G Sbjct: 416 HLRQKDKKADKSAASAATSSLPSYPSPVATSYPSPATTSYPSPATTSYPSPVPTSYSSPG 475
Query: 184 SQDFGSSCKQGFPS 143 S + S GFPS Sbjct: 476 SSTYPSPVHNGFPS 489
>sp|Q499R0|ZF518_RAT Zinc finger protein 518 OS=Rattus norvegicus GN=Znf518 PE=2 SV=1 Length = 1478
Score = 29.6 bits (65), Expect = 5.5 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1
Query: 142 SLENPVYMKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRV 291 S E PV++ +S + R KA IE N+ RK+CK + TR+ Sbjct: 1213 SSEEPVHISERSETRVSRSKANCT----IERNFNKRKTCKNKFAKIKTRI 1258
>sp|Q4K9T4|NUOCD_PSEF5 NADH-quinone oxidoreductase subunit C/D OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=nuoC PE=3 SV=1 Length = 593
Score = 29.6 bits (65), Expect = 5.5 Identities = 22/87 (25%), Positives = 37/87 (42%) Frame = -2
Query: 295 GTPSLIPTNGELCNFSWWSNLIRSFPKPY*WPYPSEGSQDFGSSCKQGFPSFLFDTLCYI 116 G P L T +L +R+ PKPY Y G + + +QG P F ++ Sbjct: 40 GMPVLWVTRSKLVEVL---TFLRNLPKPYVMLYDLHGVDERLRTKRQGLPGADFSVFYHL 96
Query: 115 VSQWIAGWILLEAMPKNGHLTLCCLTG 35 +S ++++ G L+L +TG Sbjct: 97 LSIERNSDVMIKVALSEGDLSLPTVTG 123
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1 Length = 564
Score = 29.6 bits (65), Expect = 5.5 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = +1
Query: 160 YMKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRVCPYHLSPLCKALMR-- 333 +M V L RD T L +I S+W R+ CKV V T ++ +C+ L Sbjct: 215 HMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPT----VDMNNVCRVLEEKT 270
Query: 334 -GLACHSYGG 360 G H GG Sbjct: 271 GGEIIHRVGG 280
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1 Length = 674
Score = 29.6 bits (65), Expect = 5.5 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +1
Query: 163 MKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRVCPYHLSPLCKAL---MR 333 +KS+ + + RD T L I S+W ++ CK+ VC + +C L + Sbjct: 198 LKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIK----CKGVCTIDMDNICHQLEEKVG 253
Query: 334 GLACHSYGG 360 G H GG Sbjct: 254 GKVIHRQGG 262
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A2PQF6 |
Definition |
tr|A2PQF6|A2PQF6_VIBCH Exodeoxyribonuclease V, 67 kDa subunit OS=Vibrio cholerae MZO-3 |
Align length |
55 |
Score (bit) |
34.3 |
E-value |
3.2 |
Report |
|