BP915293
Clone id YMU001_000069_G11
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAGACCTAAGACAGCCTGTTGTTGTCACTATCTCCCCTGTAAGACAGCAGAGAGTCAGAT
GGCCATTCTTAGGCATGGCTTCAAGAAGTATCCAACCAGCAATCCACTGGCTGACAATGT
AACACAAGGTGTCGAACAAGAAGCTTGGAAAACCCTGTTTACATGAAGAGCCAAAGTCTT
GTGACCCTTCTGAGGGATAAGGCCACTAGTAGGGCTTTGGGAATGATCGAATCAAATTGG
ACCACCAGGAAAAGTTGCAAAGTTCCCCATTGGTCGGTATCAACGAGGGTGTGCCCTTAC
CATTTGAGCCCCTTATGCAAAGCTTTGATGCGAGGGCTCGCTTGTCATTCATATGGTGGT
GGCACCCTGAGAAAAGCACAAAATTCTCACTTGCCCAGTTTTGAGTGTCCCCTTCTTAAA
AATGCTTAAAT
■■Homology search results ■■ -
sp_hit_id B2RRF6
Definition sp|B2RRF6|ZF518_MOUSE Zinc finger protein 518 OS=Mus musculus
Align length 50
Score (bit) 33.1
E-value 0.49
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915293|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_G11.
(431 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|B2RRF6|ZF518_MOUSE Zinc finger protein 518 OS=Mus musculus GN... 33 0.49
sp|P08046|EGR1_MOUSE Early growth response protein 1 OS=Mus musc... 32 1.1
sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protei... 31 1.9
sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protei... 30 3.2
sp|P08154|EGR1_RAT Early growth response protein 1 OS=Rattus nor... 30 3.2
sp|Q29W20|EGR1_BOVIN Early growth response protein 1 OS=Bos taur... 30 4.2
sp|Q499R0|ZF518_RAT Zinc finger protein 518 OS=Rattus norvegicus... 30 5.5
sp|Q4K9T4|NUOCD_PSEF5 NADH-quinone oxidoreductase subunit C/D OS... 30 5.5
sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS... 30 5.5
sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS... 30 5.5
sp|P97535|PLA1A_RAT Phospholipase A1 member A OS=Rattus norvegic... 29 7.1
sp|Q9D2L9|F111A_MOUSE Protein FAM111A OS=Mus musculus GN=Fam111a... 29 9.3
sp|P18146|EGR1_HUMAN Early growth response protein 1 OS=Homo sap... 29 9.3
sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS... 29 9.3

>sp|B2RRF6|ZF518_MOUSE Zinc finger protein 518 OS=Mus musculus
GN=Znf518 PE=1 SV=1
Length = 1478

Score = 33.1 bits (74), Expect = 0.49
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1

Query: 142 SLENPVYMKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRV 291
S E PVY+ +S +LR KA +E N+ RK+CK + TR+
Sbjct: 1213 SSEEPVYISERSETRVLRGKANCA----VERNFNKRKTCKNKFAKIKTRI 1258


>sp|P08046|EGR1_MOUSE Early growth response protein 1 OS=Mus
musculus GN=Egr1 PE=1 SV=2
Length = 533

Score = 32.0 bits (71), Expect = 1.1
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = -2

Query: 349 NDKRALASKLCIRGSNGKGTPSLI--PTNGELCNF------SWWSNLIRSFPKPY*WPYP 194
+D+R +K+ +R + K S++ P L ++ S+ S SFP P Y
Sbjct: 406 SDERKRHTKIHLRQKDKKADKSVVASPAASSLSSYPSPVATSYPSPATTSFPSPVPTSYS 465

Query: 193 SEGSQDFGSSCKQGFPS 143
S GS + S GFPS
Sbjct: 466 SPGSSTYPSPAHSGFPS 482


>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein
At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577

Score = 31.2 bits (69), Expect = 1.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2

Query: 328 SKLCIRGSNGKGTPSLIPTNGELCNFSWWSNLIRSFPKPY*WPYPSEGSQDFGSSCKQGF 149
S+ R GKG P + P++ +LC +W R+F S GS D+ + G
Sbjct: 14 SRFVHRNLQGKGNPRIAPSSIDLCGMCYWG---RAF---------SSGSGDYREILRNGL 61

Query: 148 PSFLFD 131
S D
Sbjct: 62 HSMKLD 67


>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein
At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634

Score = 30.4 bits (67), Expect = 3.2
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -2

Query: 328 SKLCIRGSNGKGTPSLIPTNGELCNFSWWSNLIRSFPKPY*WPYPSEGSQDFGSSCKQGF 149
S++ R GKG P + P++ +LC +W R+F S GS D+ + G
Sbjct: 14 SRIVHRNLQGKGNPRIAPSSIDLCGMCYWG---RAF---------SSGSGDYREILRNGL 61

Query: 148 PSFLFD 131
D
Sbjct: 62 HDMKLD 67


>sp|P08154|EGR1_RAT Early growth response protein 1 OS=Rattus
norvegicus GN=Egr1 PE=1 SV=2
Length = 508

Score = 30.4 bits (67), Expect = 3.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = -2

Query: 349 NDKRALASKLCIRGSNGKGTPSLIPTNG--ELCNF------SWWSNLIRSFPKPY*WPYP 194
+D+R +K+ +R + K S++ ++ L ++ S+ S SFP P Y
Sbjct: 381 SDERKRHTKIHLRQKDKKADKSVVASSAASSLSSYPSPVATSYPSPATTSFPSPVPTSYS 440

Query: 193 SEGSQDFGSSCKQGFPS 143
S GS + S GFPS
Sbjct: 441 SPGSSTYPSPAHSGFPS 457


>sp|Q29W20|EGR1_BOVIN Early growth response protein 1 OS=Bos taurus
GN=EGR1 PE=2 SV=1
Length = 540

Score = 30.0 bits (66), Expect = 4.2
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -2

Query: 361 HHHMNDKRALASKLCIRGSNGKGTPSLIPTN-GELCNFSWWSNLIRSFPKPY*WPYPSEG 185
H DK+A S S+ PS + T+ S+ S S+P P Y S G
Sbjct: 416 HLRQKDKKADKSAASAATSSLPSYPSPVATSYPSPATTSYPSPATTSYPSPVPTSYSSPG 475

Query: 184 SQDFGSSCKQGFPS 143
S + S GFPS
Sbjct: 476 SSTYPSPVHNGFPS 489


>sp|Q499R0|ZF518_RAT Zinc finger protein 518 OS=Rattus norvegicus
GN=Znf518 PE=2 SV=1
Length = 1478

Score = 29.6 bits (65), Expect = 5.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1

Query: 142 SLENPVYMKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRV 291
S E PV++ +S + R KA IE N+ RK+CK + TR+
Sbjct: 1213 SSEEPVHISERSETRVSRSKANCT----IERNFNKRKTCKNKFAKIKTRI 1258


>sp|Q4K9T4|NUOCD_PSEF5 NADH-quinone oxidoreductase subunit C/D
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=nuoC PE=3 SV=1
Length = 593

Score = 29.6 bits (65), Expect = 5.5
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = -2

Query: 295 GTPSLIPTNGELCNFSWWSNLIRSFPKPY*WPYPSEGSQDFGSSCKQGFPSFLFDTLCYI 116
G P L T +L +R+ PKPY Y G + + +QG P F ++
Sbjct: 40 GMPVLWVTRSKLVEVL---TFLRNLPKPYVMLYDLHGVDERLRTKRQGLPGADFSVFYHL 96

Query: 115 VSQWIAGWILLEAMPKNGHLTLCCLTG 35
+S ++++ G L+L +TG
Sbjct: 97 LSIERNSDVMIKVALSEGDLSLPTVTG 123


>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic
OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1
Length = 564

Score = 29.6 bits (65), Expect = 5.5
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1

Query: 160 YMKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRVCPYHLSPLCKALMR-- 333
+M V L RD T L +I S+W R+ CKV V T ++ +C+ L
Sbjct: 215 HMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPT----VDMNNVCRVLEEKT 270

Query: 334 -GLACHSYGG 360
G H GG
Sbjct: 271 GGEIIHRVGG 280


>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic
OS=Zea mays GN=CAF1 PE=1 SV=1
Length = 674

Score = 29.6 bits (65), Expect = 5.5
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +1

Query: 163 MKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRVCPYHLSPLCKAL---MR 333
+KS+ + + RD T L I S+W ++ CK+ VC + +C L +
Sbjct: 198 LKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIK----CKGVCTIDMDNICHQLEEKVG 253

Query: 334 GLACHSYGG 360
G H GG
Sbjct: 254 GKVIHRQGG 262


tr_hit_id A2PQF6
Definition tr|A2PQF6|A2PQF6_VIBCH Exodeoxyribonuclease V, 67 kDa subunit OS=Vibrio cholerae MZO-3
Align length 55
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915293|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_G11.
(431 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A2PQF6|A2PQF6_VIBCH Exodeoxyribonuclease V, 67 kDa subunit OS... 34 3.2
tr|Q7V066|Q7V066_PROMP Conserved hypothetical OS=Prochlorococcus... 33 5.5
tr|Q5DU36|Q5DU36_MOUSE MKIAA0335 protein (Fragment) OS=Mus muscu... 33 7.1
tr|Q4SAE9|Q4SAE9_TETNG Chromosome 13 SCAF14688, whole genome sho... 33 9.3

>tr|A2PQF6|A2PQF6_VIBCH Exodeoxyribonuclease V, 67 kDa subunit
OS=Vibrio cholerae MZO-3 GN=recD PE=4 SV=1
Length = 706

Score = 34.3 bits (77), Expect = 3.2
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3

Query: 237 LDHQEKLQSSPLVGI-NEGVPLPFEPLMQSFDARARLSFIWWWHPEKSTKFSLAQ 398
LD Q LQSSPLVG+ E VPL F+ ARL +WH EK L +
Sbjct: 97 LDWQALLQSSPLVGLQGEAVPLMFD--------GARLYLHRYWHYEKQLAARLTE 143


>tr|Q7V066|Q7V066_PROMP Conserved hypothetical OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1378 / MED4)
GN=PMM1416 PE=3 SV=1
Length = 694

Score = 33.5 bits (75), Expect = 5.5
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 409 DTQNWASENFVLFSGCHHHMND-KRALASKLCIRGSNGKGTPSLIPTNGELCN 254
+T NW +N V FSG H H D RA +K GS+ +G ++ +G+L N
Sbjct: 112 ETYNWEMKNGVTFSGSHIHTIDYDRAKFAKFMKNGSSAEG---MVKDSGKLFN 161


>tr|Q5DU36|Q5DU36_MOUSE MKIAA0335 protein (Fragment) OS=Mus musculus
GN=Zfp518 PE=2 SV=1
Length = 372

Score = 33.1 bits (74), Expect = 7.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1

Query: 142 SLENPVYMKSQSLVTLLRDKATSRALGMIESNWTTRKSCKVPHWSVSTRV 291
S E PVY+ +S +LR KA +E N+ RK+CK + TR+
Sbjct: 158 SSEEPVYISERSETRVLRGKANCA----VERNFNKRKTCKNKFAKIKTRI 203


>tr|Q4SAE9|Q4SAE9_TETNG Chromosome 13 SCAF14688, whole genome
shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00021486001 PE=4 SV=1
Length = 267

Score = 32.7 bits (73), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1

Query: 262 VPHWSVSTRVCPYHLSPLCKALMRGLACHSYGGGTLRKAQNS 387
VP WS S + HLS L + R +C S GG RK + S
Sbjct: 191 VPTWSCSHPLLIEHLSQLVMDVRRSCSCMSINGGDTRKIERS 232