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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915248
Clone id YMU001_000069_C07
Library
Length 332
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGGAAAGATGAAAAGGACAATGAAGAGAAGAGATGAATAAAAAAGAAGTGGCTGCACAC
CAAGAGGAACCTCAGTAGAAGAAGGCGAGGTTTGAAAGGGAAAAACAAACCTACAAAAGA
AGCCGCCAAGCTGCAAGTGAGGACCAAGCAAGTTGGGTTCCAGGAGATATAAGAGGATCC
CGAACCAGGAATCCTATCAAGAATGAACGAGAAGATCCCAAGGATTCTCTTGAACGCATG
TACGAGGAAGGAGAAGCCTTAAAGCTAAAAGAAGCTCAAGAAGCTGAAAGAAAAGCAAAG
GAAGATGCTGTGGAGTAGCAGAGACAAGCTGA
■■Homology search results ■■ -
sp_hit_id Q93Y39
Definition sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana
Align length 44
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915248|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_C07.
         (332 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=A...    33   0.45 
sp|P12736|RL32_HALMA 50S ribosomal protein L32e OS=Haloarcula ma...    32   1.3  
sp|Q9VAQ7|SLU7_DROME Pre-mRNA-splicing factor Slu7 OS=Drosophila...    30   2.9  
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=O...    30   2.9  
sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3...    30   2.9  
sp|Q9HPB7|RL32_HALSA 50S ribosomal protein L32e OS=Halobacterium...    30   3.8  
sp|Q3UTA9|I4E1B_MOUSE Eukaryotic translation initiation factor 4...    29   6.4  
sp|Q9W2U4|PP4R2_DROME Serine/threonine-protein phosphatase 4 reg...    29   8.4  
sp|P35663|CYLC1_HUMAN Cylicin-1 OS=Homo sapiens GN=CYLC1 PE=1 SV=2     29   8.4  
sp|P13915|CVCA_PEA Convicilin OS=Pisum sativum GN=CVCA PE=1 SV=1       29   8.4  

>sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13
           OS=Arabidopsis thaliana GN=RH13 PE=2 SV=2
          Length = 832

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +2

Query: 5   KDEKDNEEKR*IKKKWLHTKRNLSRRRRGLKGKNKPTKEAAKLQ 136
           +D++D+EE R  KKK    KRN  +++   K K K   EAAK Q
Sbjct: 122 EDDEDDEETR--KKKEKKAKRNKEKKKEKKKKKQKKINEAAKNQ 163


>sp|P12736|RL32_HALMA 50S ribosomal protein L32e OS=Haloarcula
           marismortui GN=rpl32e PE=1 SV=3
          Length = 241

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +2

Query: 8   DEKDNEEKR*IKKKWLHTKRNLSRRRRGLKGKNKPTKEA---AKLQVRTKQ-VGFQEI 169
           + +D+ +K+ +   W   +  LS++RRG+KGK   T EA   +   VR K   GF+E+
Sbjct: 130 NRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKG-DTVEAGFRSPTAVRGKHPSGFEEV 186


>sp|Q9VAQ7|SLU7_DROME Pre-mRNA-splicing factor Slu7 OS=Drosophila
           melanogaster GN=Slu7 PE=1 SV=2
          Length = 574

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +2

Query: 5   KDEKDNEEKR*IKKKWLHTKRNLSRRRRGLKGKNKPTKEAAKLQVRTKQVGFQEI*EDPE 184
           ++E   E+K+  KK     K+  ++ +R  KGKNK TK+  K    TK+    E  +D +
Sbjct: 484 EEEVKPEKKKTKKKSKKREKKKKAKEQRKQKGKNKETKDKDK----TKEKDIPEELDDRK 539

Query: 185 PGILSRMNEKIP 220
               S  + K P
Sbjct: 540 RAYNSMYDVKAP 551


>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42
           OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2
           SV=1
          Length = 1049

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 1   RER*KGQ*REEMNKKEVAAHQEEPQ*KKARF--EREKQTYKRSRQAASEDQASWVPGDIR 174
           R R K + REE   +E    ++E + ++AR   ER+++   R R+AA+E++   V  D +
Sbjct: 60  RHREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRK 119

Query: 175 GSR 183
             R
Sbjct: 120 RRR 122


>sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3
            subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1
          Length = 1382

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 19   Q*REEMNKK-EVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGSRTRNP 195
            Q REE +K  E    +E    ++ RF R +      R+  +E+ +SW     R  R R+ 
Sbjct: 1214 QDREENDKDPERERDRERDVDREDRFRRPRDE-GGWRRGPAEESSSWRDSSRRDDRDRDD 1272

Query: 196  IKNEREDPKDSLER 237
             + ER+D +D  ER
Sbjct: 1273 RRRERDDRRDLRER 1286


>sp|Q9HPB7|RL32_HALSA 50S ribosomal protein L32e OS=Halobacterium
           salinarium GN=rpl32e PE=1 SV=3
          Length = 239

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 8   DEKDNEEKR*IKKKWLHTKRNLSRRRRGLKGKNKPTKEAAK--LQVRTKQ-VGFQEI 169
           + +D  +K+     W   K  LS++RRG+KGK    +   +    VR K   GF+E+
Sbjct: 126 NRQDYHKKKRTPTSWRRPKGTLSKQRRGIKGKGDTVEAGFRTPTAVRGKHPSGFEEV 182


>sp|Q3UTA9|I4E1B_MOUSE Eukaryotic translation initiation factor 4E
           type 1B OS=Mus musculus GN=Eif4e1b PE=2 SV=1
          Length = 244

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 34  MNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGSRTRNPIKNERE 213
           MNK E   H+EE   K+    +EK + + + +     +A  +PG ++  R     K  RE
Sbjct: 1   MNKVEGGGHKEEVVVKEKEVVKEKPS-EATAEGVQAGEAKDLPGSLKTQRR----KAHRE 55

Query: 214 DPKDSLERMY 243
            P + L +++
Sbjct: 56  HPPEVLSKLH 65


>sp|Q9W2U4|PP4R2_DROME Serine/threonine-protein phosphatase 4
           regulatory subunit 2 OS=Drosophila melanogaster
           GN=PPP4R2r PE=1 SV=2
          Length = 609

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +1

Query: 25  REEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGSRTRN---- 192
           +EE+ KKE     ++P  K A+   +    K +  A  E+Q    P  ++    +     
Sbjct: 334 KEEIVKKEEVVESDKPDGKVAQLGDKAVVKKSTPPADGENQE---PVKVKAENEKEEKKH 390

Query: 193 -PIKNEREDPKDSLE 234
            PIK E++D  DS E
Sbjct: 391 APIKTEKQDDIDSTE 405


>sp|P35663|CYLC1_HUMAN Cylicin-1 OS=Homo sapiens GN=CYLC1 PE=1 SV=2
          Length = 651

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 5   KDEKDNEEKR*IKKKWLHTKRNLSRRRRGLKGKNKPTKE 121
           KD+KD++  +    ++LHTK N  +  +  K  N P  E
Sbjct: 198 KDKKDSKNSKKTNTEFLHTKNNPKKDLKRSKTSNDPISE 236


>sp|P13915|CVCA_PEA Convicilin OS=Pisum sativum GN=CVCA PE=1 SV=1
          Length = 571

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = +1

Query: 25  REEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGSRTRNPIKN 204
           R+E  K+E    +  P  +K   E EKQ Y+  R+   ++Q    PG  R  R  +  + 
Sbjct: 46  RQEGEKEEKRHGEWRPSYEKEEHEEEKQKYRYQRE--KKEQKEVQPGRERWEREEDEEQV 103

Query: 205 E--------REDPKD 225
           E        REDP++
Sbjct: 104 EEEWRGSQRREDPEE 118
tr_hit_id B4PRV0
Definition tr|B4PRV0|B4PRV0_DROYA GE10585 OS=Drosophila yakuba
Align length 71
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915248|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_C07.
         (332 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4PRV0|B4PRV0_DROYA GE10585 OS=Drosophila yakuba GN=GE10585 P...    39   0.13 
tr|Q05AW2|Q05AW2_XENLA MGC154560 protein OS=Xenopus laevis GN=MG...    38   0.29 
tr|Q8GL45|Q8GL45_BORBU Erp42 protein OS=Borrelia burgdorferi GN=...    38   0.29 
tr|O08264|O08264_BORBU ErpB2 (ErpB) (Erp51 protein) (ErpO) OS=Bo...    37   0.50 
tr|Q44782|Q44782_BORBU ErpB OS=Borrelia burgdorferi GN=erpB PE=4...    37   0.50 
tr|Q6PAA6|Q6PAA6_XENLA MGC68481 protein OS=Xenopus laevis GN=MGC...    35   1.9  
tr|Q5BL70|Q5BL70_XENTR Cisplatin resistance-associated overexpre...    35   1.9  
tr|Q28G85|Q28G85_XENTR Cisplatin resistance-associated overexpre...    35   1.9  
tr|Q4RY53|Q4RY53_TETNG Chromosome 3 SCAF14978, whole genome shot...    34   3.2  
tr|O87298|O87298_BORBU ElpB1 OS=Borrelia burgdorferi PE=4 SV=1         34   4.2  
tr|B2WEM4|B2WEM4_PYRTR Putative uncharacterized protein OS=Pyren...    33   5.5  
tr|Q9VB74|Q9VB74_DROME CG6066 OS=Drosophila melanogaster GN=CG60...    33   9.4  
tr|B4ID01|B4ID01_DROSE GM16758 (Fragment) OS=Drosophila sechelli...    33   9.4  
tr|A0D7R2|A0D7R2_PARTE Chromosome undetermined scaffold_40, whol...    33   9.4  
tr|A6RM50|A6RM50_BOTFB Putative uncharacterized protein OS=Botry...    33   9.4  

>tr|B4PRV0|B4PRV0_DROYA GE10585 OS=Drosophila yakuba GN=GE10585 PE=4
           SV=1
          Length = 460

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = +1

Query: 25  REEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGSRTRNPIKN 204
           RE    +E   H+E    + +R  REK      R++ S    S      R SR+R+P KN
Sbjct: 41  RERERDREREHHRERTSNRGSRRSREKDAVSHRRRSRSSSSRSSSSSSDRSSRSRSPSKN 100

Query: 205 EREDPKDSLER 237
            +  PK S+ER
Sbjct: 101 RKSRPK-SVER 110


>tr|Q05AW2|Q05AW2_XENLA MGC154560 protein OS=Xenopus laevis
           GN=MGC154560 PE=2 SV=1
          Length = 430

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 29/79 (36%), Positives = 41/79 (51%)
 Frame = +1

Query: 1   RER*KGQ*REEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGS 180
           RE+ K Q REE  KK     +EE + K+   EREK+     +++ S  + S    D RGS
Sbjct: 256 REKEKEQEREEREKKR--RREEEAKEKEKNREREKR-----KRSCSRSRNSSRTSDRRGS 308

Query: 181 RTRNPIKNEREDPKDSLER 237
           RTR+  ++   D K S  R
Sbjct: 309 RTRDHKRSRSRDRKRSRSR 327


>tr|Q8GL45|Q8GL45_BORBU Erp42 protein OS=Borrelia burgdorferi
           GN=erp42 PE=4 SV=1
          Length = 370

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +1

Query: 28  EEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQA-SWVPGDIRGSRTRNPIKN 204
           EE NK+E+A  +EE Q +KA  E++K+  ++ R+A +E +A        +  + +   + 
Sbjct: 144 EERNKQELAKQEEEQQKRKAEKEKQKREEEQERKAKAEKEAKEKAERQKQEEQQKRKAEK 203

Query: 205 EREDPKDSLER 237
           ERE+ +   E+
Sbjct: 204 EREEQRKEAEK 214


>tr|O08264|O08264_BORBU ErpB2 (ErpB) (Erp51 protein) (ErpO)
           OS=Borrelia burgdorferi GN=erpB2 PE=4 SV=1
          Length = 378

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +1

Query: 28  EEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQ 147
           EE NK+E+A  +EE Q +KA  E++K+  ++ RQ   E+Q
Sbjct: 143 EERNKQELAKQEEEQQKRKAEQEKQKREEEQERQKREEEQ 182


>tr|Q44782|Q44782_BORBU ErpB OS=Borrelia burgdorferi GN=erpB PE=4
           SV=1
          Length = 218

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +1

Query: 28  EEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQ 147
           EE NK+E+A  +EE Q +KA  E++K+  ++ RQ   E+Q
Sbjct: 143 EERNKQELAKQEEEQQKRKAEQEKQKREEEQERQKREEEQ 182


>tr|Q6PAA6|Q6PAA6_XENLA MGC68481 protein OS=Xenopus laevis
           GN=MGC68481 PE=2 SV=1
          Length = 432

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 29/79 (36%), Positives = 38/79 (48%)
 Frame = +1

Query: 1   RER*KGQ*REEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGS 180
           RE+ K   REE  KK     +EE + K+   EREK+   RSR   S   +     D RGS
Sbjct: 256 REKEKELEREEREKKR--QREEEAKEKERNREREKRKRSRSRSRNSSRTS-----DRRGS 308

Query: 181 RTRNPIKNEREDPKDSLER 237
           R R+  ++   D K S  R
Sbjct: 309 RPRDHKRSRSRDRKRSRSR 327


>tr|Q5BL70|Q5BL70_XENTR Cisplatin resistance-associated
           overexpressed protein OS=Xenopus tropicalis GN=crop PE=2
           SV=1
          Length = 432

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 28/79 (35%), Positives = 41/79 (51%)
 Frame = +1

Query: 1   RER*KGQ*REEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGS 180
           +E+ K + REE  KK     +EE + K+   EREK+  KRSR  +     +    D RGS
Sbjct: 258 KEKEKEKEREEREKKR--RREEEAKEKERNREREKR--KRSRSGSRNSSRT---SDRRGS 310

Query: 181 RTRNPIKNEREDPKDSLER 237
           R+R+  ++   D K S  R
Sbjct: 311 RSRDHKRSRSRDRKRSRSR 329


>tr|Q28G85|Q28G85_XENTR Cisplatin resistance-associated
           overexpressed protein OS=Xenopus tropicalis
           GN=TGas054e13.1-001 PE=2 SV=1
          Length = 434

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 28/79 (35%), Positives = 41/79 (51%)
 Frame = +1

Query: 1   RER*KGQ*REEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGS 180
           +E+ K + REE  KK     +EE + K+   EREK+  KRSR  +     +    D RGS
Sbjct: 260 KEKEKEKEREEREKKR--RREEEAKEKERNREREKR--KRSRSGSRNSSRT---SDRRGS 312

Query: 181 RTRNPIKNEREDPKDSLER 237
           R+R+  ++   D K S  R
Sbjct: 313 RSRDHKRSRSRDRKRSRSR 331


>tr|Q4RY53|Q4RY53_TETNG Chromosome 3 SCAF14978, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00027143001 PE=4 SV=1
          Length = 933

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +1

Query: 1   RER*KGQ*REEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQASWVPGDIRGS 180
           RER + + REE  ++     +E  + ++ R ERE++  +   Q   E Q  W   +    
Sbjct: 574 REREREREREEREREREEREREREERERERKEREREREREREQRERERQREWEERE---- 629

Query: 181 RTRNPIKNEREDPKD 225
           R R   ++ RED +D
Sbjct: 630 RGREERRDRREDSRD 644


>tr|O87298|O87298_BORBU ElpB1 OS=Borrelia burgdorferi PE=4 SV=1
          Length = 375

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 28  EEMNKKEVAAHQEEPQ*KKARFEREKQTYKRSRQAASEDQA-SWVPGDIRGSRTRNPIKN 204
           E  NK+E+A  +EE Q +KA  E++K+   + R+A +E +A        +  + +   + 
Sbjct: 144 EVRNKQELAKQEEEQQKRKAEKEKQKREEVQERKAKAEKEAKEKAERQKQEEQQKRKAEK 203

Query: 205 EREDPKDSLER 237
           ERE+ +   E+
Sbjct: 204 EREEQRKEAEK 214