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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915087
Clone id YMU001_000066_D02
Library
Length 449
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAATTCAGTCTCATTTTTTATTACAACCAACGAACGGAAAGTAATTTCTTTATGCATAT
TATCTAAAGTAGTCTCAGTAGCTATTGTGTCATCACCAAGACGCCAACAAGTAGCACTTG
CAGCATAATTTAATCCTATTTCTCGCCAGCATTCTCTATTTTGGTAGGAGACTTGGATTG
TTCCAGGCCTCAGATCTTTAGCAGCACCTCCATCAGAACGTTCTTGCTCCTCATCTTTCA
AAGTGGGAAAGCAGTAGATGCTGTAGCAGACCTCTCCATTGTCACTGCTTTCTCCATTCT
GCTTGCTTTTCTGTGGTGGCTTCAAAGCTTCCCATTTAATGTTGAACATGCACACAGGTC
GAGTATCTCCTTTCTTCTCCGTATCTATGCTTGAATCTCTTGCAGAAGATGCCAGTGGAA
ATGAGCAGTAACCAACTGCCGCCCCTGTT
■■Homology search results ■■ -
sp_hit_id P0C7A6
Definition sp|P0C7A6|BTBDB_DANRE Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 OS=Danio rerio
Align length 64
Score (bit) 32.7
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915087|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_D02.
         (435 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C7A6|BTBDB_DANRE Ankyrin repeat and BTB/POZ domain-containi...    33   0.66 
sp|P01733|TVB1_HUMAN T-cell receptor beta chain V region YT35 OS...    31   2.0  
sp|P0C5Y8|ALS2_RAT Alsin OS=Rattus norvegicus GN=Als2 PE=2 SV=1        30   4.3  
sp|Q920R0|ALS2_MOUSE Alsin OS=Mus musculus GN=Als2 PE=1 SV=2           30   4.3  
sp|A0LIL8|RL17_SYNFM 50S ribosomal protein L17 OS=Syntrophobacte...    29   7.3  
sp|P79885|SOMA_LEPOS Somatotropin OS=Lepisosteus osseus GN=gh PE...    29   9.6  
sp|Q5BIW4|ALS2_PANTR Alsin OS=Pan troglodytes GN=ALS2 PE=2 SV=1        29   9.6  
sp|Q96Q42|ALS2_HUMAN Alsin OS=Homo sapiens GN=ALS2 PE=1 SV=1           29   9.6  

>sp|P0C7A6|BTBDB_DANRE Ankyrin repeat and BTB/POZ domain-containing
           protein BTBD11 OS=Danio rerio GN=btbd11 PE=4 SV=1
          Length = 1012

 Score = 32.7 bits (73), Expect = 0.66
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -2

Query: 230 TLKDEEQERSDGGAAKDLRPGTIQVSYQNRECWREIGLNYAASATCWRLGDDTIATETTL 51
           TL+D   +   GGAA   R  ++ +      C  E  ++YA    CW L D   +   +L
Sbjct: 11  TLEDLTLDSGYGGAADSFRSSSLSL------CCSEAHISYAHGGHCWNLTDSMRSRHNSL 64

Query: 50  DNMH 39
           D ++
Sbjct: 65  DTVN 68


>sp|P01733|TVB1_HUMAN T-cell receptor beta chain V region YT35
           OS=Homo sapiens GN=TCRBV8S1 PE=4 SV=1
          Length = 135

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query: 31  ISLCIL-SKVVSVAIVSSPRR------QQVALAA*FNPISRQHSLFW*ETWIVPGLRSL 186
           +SLCIL +K     ++ SPR       Q+V L     PIS  +SLFW    ++ GL  L
Sbjct: 9   VSLCILVAKHTDAGVIQSPRHEVTEMGQEVTLRC--KPISGHNSLFWYRQTMMRGLELL 65


>sp|P0C5Y8|ALS2_RAT Alsin OS=Rattus norvegicus GN=Als2 PE=2 SV=1
          Length = 1651

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 140  ECWREIGLNYAASATCWRLGDDTIATETTLDNMHKE 33
            ECWR++G         W+  D+     TT    HK+
Sbjct: 1293 ECWRQLGCESPGQGEVWKAWDNIAVALTTNRRQHKD 1328


>sp|Q920R0|ALS2_MOUSE Alsin OS=Mus musculus GN=Als2 PE=1 SV=2
          Length = 1651

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 140  ECWREIGLNYAASATCWRLGDDTIATETTLDNMHKE 33
            ECWR++G         W+  D+     TT    HK+
Sbjct: 1293 ECWRQLGCESPGQGEVWKAWDNIAVALTTNRRQHKD 1328


>sp|A0LIL8|RL17_SYNFM 50S ribosomal protein L17 OS=Syntrophobacter
           fumaroxidans (strain DSM 10017 / MPOB) GN=rplQ PE=3 SV=1
          Length = 151

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 362 KKGDTRPVCMFNIKWEALKPPQKSK 288
           ++GD  P+C+  +  EA +PP+K K
Sbjct: 103 RRGDASPMCLIELITEAKQPPRKEK 127


>sp|P79885|SOMA_LEPOS Somatotropin OS=Lepisosteus osseus GN=gh PE=2
           SV=1
          Length = 211

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 302 PQKSKQNGESSDNGEVCYSIYC-FPTLKDEEQERSD 198
           P++ +Q+ +SS +  +CYS     PT KDE Q+RSD
Sbjct: 58  PEEQRQSSKSSPSA-ICYSESIPAPTGKDEAQQRSD 92


>sp|Q5BIW4|ALS2_PANTR Alsin OS=Pan troglodytes GN=ALS2 PE=2 SV=1
          Length = 1657

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -2

Query: 140  ECWREIGLNYAASATCWRLGDDTIATETTLDNMHKE 33
            ECWR++G         W+  D+     TT    H++
Sbjct: 1299 ECWRQLGCEGPGQGEVWKAWDNIAVALTTSRRQHRD 1334


>sp|Q96Q42|ALS2_HUMAN Alsin OS=Homo sapiens GN=ALS2 PE=1 SV=1
          Length = 1657

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -2

Query: 140  ECWREIGLNYAASATCWRLGDDTIATETTLDNMHKE 33
            ECWR++G         W+  D+     TT    H++
Sbjct: 1299 ECWRQLGCEGPGQGEVWKAWDNIAVALTTSRRQHRD 1334
tr_hit_id A7PCH1
Definition tr|A7PCH1|A7PCH1_VITVI Chromosome chr2 scaffold_11, whole genome shotgun sequence OS=Vitis vinifera
Align length 143
Score (bit) 61.2
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915087|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_D02.
         (435 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PCH1|A7PCH1_VITVI Chromosome chr2 scaffold_11, whole genome...    61   2e-08
tr|A5B5J1|A5B5J1_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A9RMV8|A9RMV8_PHYPA Predicted protein OS=Physcomitrella paten...    60   5e-08
tr|A9TGH0|A9TGH0_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|O23557|O23557_ARATH Putative uncharacterized protein dl4595c ...    55   2e-06
tr|B8BIA4|B8BIA4_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A3C7E5|A3C7E5_ORYSJ Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|B6PTB6|B6PTB6_BRAFL Putative uncharacterized protein OS=Branc...    37   0.49 
tr|Q5CRJ3|Q5CRJ3_CRYPV MutL family ATpase OS=Cryptosporidium par...    35   1.9  
tr|A9RTD5|A9RTD5_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A7P0N1|A7P0N1_VITVI Chromosome chr19 scaffold_4, whole genome...    33   7.1  
tr|Q8NJS0|Q8NJS0_LEPMC RNA polymerase II C-terminal domain phosp...    33   7.1  
tr|B0TI04|B0TI04_HELMI Putative uncharacterized protein OS=Helio...    33   9.3  

>tr|A7PCH1|A7PCH1_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015859001
           PE=4 SV=1
          Length = 2014

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 45/143 (31%), Positives = 68/143 (47%)
 Frame = -2

Query: 434 TGAAVGYCSFPLASSARDSSIDTEKKGDTRPVCMFNIKWEALKPPQKSKQNGESSDNGEV 255
           TG  +G+ S PL   A +   +T    D     +  + W       KSK     S  G +
Sbjct: 543 TGDPIGFFSAPLKQIAGNIQ-ETLYSDDY----LNELTWMESTQTDKSK-----STCGRI 592

Query: 254 CYSIYCFPTLKDEEQERSDGGAAKDLRPGTIQVSYQNRECWREIGLNYAASATCWRLGDD 75
             +I   P  + E+ E+S GG       G IQ+S      W  + LNYAA A CWRLG+D
Sbjct: 593 RCAILLSPMSEVEKSEQSFGGR----NSGFIQISPSREGPWTSVRLNYAARAACWRLGND 648

Query: 74  TIATETTLDNMHKEITFRSLVVI 6
            +A+E ++++ +  +T R LV +
Sbjct: 649 VVASEVSVNDGNIYVTIRPLVSV 671


>tr|A5B5J1|A5B5J1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019380 PE=4 SV=1
          Length = 1063

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
 Frame = -2

Query: 434 TGAAVGYCSFPLASSARDSSIDTEKKGDTRPVCMFNIKWEALKPPQ--KSKQNGESSDN- 264
           TG  +G+ S PL   A +   +T    D     +  + W  L   +  +S Q  +S    
Sbjct: 31  TGDPIGFFSAPLKQIAGNIQ-ETLXSDDY----LNELTWMELYAAEFMRSTQTDKSKSTC 85

Query: 263 GEVCYSIYCFPTLKDEEQERSDGGAAKDLRPGTIQVSYQNRECWREIGLNYAASATCWRL 84
           G +  +I   P  + E+ E+S GG       G IQ+S      W  + LNYAA A CWRL
Sbjct: 86  GRIRCAILLSPMSEVEKSEQSFGGR----NSGFIQISPSREGPWTSVRLNYAARAACWRL 141

Query: 83  GDDTIATETTLDNMHKEITFRSLVVI 6
           G+D +A+E ++++ +  +T R LV +
Sbjct: 142 GNDVVASEVSVNDGNIYVTIRPLVSV 167


>tr|A9RMV8|A9RMV8_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_160029 PE=4 SV=1
          Length = 4849

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
 Frame = -2

Query: 431  GAAVGYCSFPLASSARDSSIDTEK-KGDTRPVCMFNIKWEALKPPQKSKQNG-------- 279
            G+ +GYCS  L+      +   +K K D   +  F ++ E L PP++ ++          
Sbjct: 3140 GSPIGYCSLELSEKG---TYGVKKIKSDFACLSSFPLRSETLYPPERDQEEAGLLGEDGE 3196

Query: 278  ---ESSDNGEVCYSIYCFPTLKDE----EQERSDGGAAKDLRP-GTIQVSYQNRECWREI 123
               E    G +  +I+ F   +DE    + E +D    ++L+  GTI+VS      W  +
Sbjct: 3197 SLVEKEHQGRINLAIHIFSAYRDEGDIEDSEDTDSLQDENLQMFGTIEVSATKNGPWSSL 3256

Query: 122  GLNYAASATCWRLGDDTIATETTLDNMHKEITFRSLVVIK 3
             LNY      W LG D  A+E  +++  K +  RSLV I+
Sbjct: 3257 RLNYGLGPAPWHLGKDHFASEMVVNDGVKHLFVRSLVTIR 3296


>tr|A9TGH0|A9TGH0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_169946 PE=4 SV=1
          Length = 4890

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 12/154 (7%)
 Frame = -2

Query: 431  GAAVGYCSFPLASSARDSSIDTEKKGDTRPVCMFNIKWEALKPPQKSKQN------GESS 270
            G+ VGYCSF +     D     E K D+       ++   L+PP K KQN       E  
Sbjct: 3220 GSPVGYCSFNITDKGMDEW--REDKSDSATSSSLALRSVTLQPP-KRKQNEDKEPLDEGC 3276

Query: 269  DNGEVCYSIYCFPTLKDEEQERSDGGAAKDLRP------GTIQVSYQNRECWREIGLNYA 108
             NG +  +   F T   EE +  D    +  +       G I+VS      W  + LNY 
Sbjct: 3277 QNGFINLAAQVF-TANGEEADDEDSDDVESQQNESSQKFGAIEVSVTKNGPWSPVRLNYG 3335

Query: 107  ASATCWRLGDDTIATETTLDNMHKEITFRSLVVI 6
                 W LG D +A+E  + +  K +  R+LV +
Sbjct: 3336 LGPAPWHLGRDYLASEMVVHDGVKHLFVRTLVTV 3369


>tr|O23557|O23557_ARATH Putative uncharacterized protein dl4595c
           (Putative uncharacterized protein AT4g17120)
           OS=Arabidopsis thaliana GN=dl4595c PE=4 SV=1
          Length = 1661

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = -2

Query: 269 DNGEVCYSIYC---FPTLKDEEQERSDGGAAKDLRPGTIQVSYQNRECWREIGLNYAASA 99
           D  + C  I C    P     +Q +S     ++ + G +QVS      W  + LNYAA A
Sbjct: 675 DQRKNCGKIRCAVLLPAKSKVDQSKS----FREKKSGFLQVSPSIEGPWTTVRLNYAAPA 730

Query: 98  TCWRLGDDTIATETTLDNMHKEITFRSLVVIK 3
            CWRLG+D +A+E ++ + ++ +  RSLV ++
Sbjct: 731 ACWRLGNDVVASEVSMQDGNRYVNVRSLVSVE 762


>tr|B8BIA4|B8BIA4_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_34684 PE=4 SV=1
          Length = 4102

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 24/57 (42%), Positives = 33/57 (57%)
 Frame = -2

Query: 176  RPGTIQVSYQNRECWREIGLNYAASATCWRLGDDTIATETTLDNMHKEITFRSLVVI 6
            + G IQ+S      W  + LNYA  A CWR G+  IA+E T+   ++ I+ RSLV I
Sbjct: 2674 KAGYIQISPSKEGPWTNMKLNYAVPAACWRFGNCVIASEATVKEGNRYISMRSLVSI 2730


>tr|A3C7E5|A3C7E5_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_031217 PE=4 SV=1
          Length = 4161

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 24/57 (42%), Positives = 33/57 (57%)
 Frame = -2

Query: 176  RPGTIQVSYQNRECWREIGLNYAASATCWRLGDDTIATETTLDNMHKEITFRSLVVI 6
            + G IQ+S      W  + LNYA  A CWR G+  IA+E T+   ++ I+ RSLV I
Sbjct: 2770 KAGYIQISPSKEGPWTNMKLNYAVPAACWRFGNCVIASEATVKEGNRYISMRSLVSI 2826


>tr|B6PTB6|B6PTB6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_110712 PE=4 SV=1
          Length = 204

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 24/89 (26%), Positives = 39/89 (43%)
 Frame = -2

Query: 419 GYCSFPLASSARDSSIDTEKKGDTRPVCMFNIKWEALKPPQKSKQNGESSDNGEVCYSIY 240
           GY +FP   +A D  IDTE + +T+              P +S  + + SD+G +     
Sbjct: 114 GYMTFPGMENAEDQDIDTEHRNETKD----------KDTPSRSASDSDMSDHGYM----- 158

Query: 239 CFPTLKDEEQERSDGGAAKDLRPGTIQVS 153
            FP +++ E +  D     D  P  + VS
Sbjct: 159 TFPGIENAEDQEIDTKHRNDKGPDQVTVS 187


>tr|Q5CRJ3|Q5CRJ3_CRYPV MutL family ATpase OS=Cryptosporidium parvum
           Iowa II GN=cgd5_2560 PE=4 SV=1
          Length = 817

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
 Frame = -2

Query: 416 YCSFPLASSARDSSIDTEKKGDTRPVCMFNIKWEALKP---PQKSKQNGESSD------- 267
           Y S  ++  +  S I  E K D       N++  ++KP    + SK+  + S+       
Sbjct: 401 YSSNSISKHSNISLITIESKQDNSNGIAKNVQCSSIKPNGGEENSKEEVKLSEKDHQKLQ 460

Query: 266 NGEVCYSIYCFPTLKDEEQERSDGGAAKDLRPGTIQVSYQNRECWREIGL-NYA--ASAT 96
           NG+     + F   K  E + ++    K   P T + S +N++ +R   + NYA  A   
Sbjct: 461 NGDNEVLEHSFNLNKSSEDQTNENFRTKLYHPSTSENSLKNKQIFRLFDISNYAMDAHVL 520

Query: 95  CWRLGDDTIATETTLDNMHKEITFRSLVVIK 3
            W L +D+I     + N   ++  + L  I+
Sbjct: 521 SWSLTNDSIPLIKEMKNFQTKVKQKFLTEIE 551


>tr|A9RTD5|A9RTD5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_177925 PE=4 SV=1
          Length = 874

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = -2

Query: 224 KDEEQERSDGGAAKDLRPGTIQVSYQNRECW------REIGLNYAASATCWRLGDDTIAT 63
           KDE +ERSD    ++ +P TI   Y  +  W        +    + S    R GDD +  
Sbjct: 528 KDELKERSDAEIQRNAQPLTIYEPYHGKGAWPFLHEENTLFRGLSLSTLDRRPGDDDVDA 587

Query: 62  ETTLDNMHKEITFRSLV 12
           E  L  +  E  +R+L+
Sbjct: 588 EVRLPGLLNETYYRNLL 604