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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914877
Clone id YMU001_000063_H03
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCATTAGAGGCAAACAGGGCAGCAGCCATAATGGCTGGCAAGGCTGTAGTTGTGCGTCA
TAAAACAAAAGGCAGGGATAAGCCGACAAAGCGGCAAAAGCGAAAGCAAATGAATATCAT
CACGGCCAAGAGGCCGTTGATTGAAGCTCAGATTCGGTCGTCTTCTGTAAAGAAAGCAAA
AACTGAGGATGAGTCTGTTCCTCGAGCTTTAAAACGTTTTACTTGAGATGCAGAAAACAG
GCTTTGCAGAAAAATTTGATCTACCAGACTGTTGAAATCAACAGTTAAGCTGTATGGTCT
GCTATTTATGGACCTTGGAGTTATTTTGGGATTTCACGTGTTCTCGAGACAATTGCAAAT
CAGCTTCTGATCACTAAGACAGGTTCTCCATGTTCATGAAGCGTTGTGGTCACTTGGGCT
TTTCTGCAAGTGATGAATTTTGTCGCGGCTCCTATCCGCCCCATAGTCACGGCTCACATC
AACTCATGTTTGCAAGGCAATGTTCAACCAAATGCTACCAGAAGGATGCAAATTGAGGCA
CTTCTTTGCATGATAAGCTTTGAAGCTTGGAAAGT
■■Homology search results ■■ -
sp_hit_id Q9P2D1
Definition sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens
Align length 43
Score (bit) 34.3
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914877|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_H03.
         (575 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7...    34   0.46 
sp|Q2KHI9|MCM9_MOUSE DNA replication licensing factor MCM9 OS=Mu...    32   2.3  
sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7...    32   2.3  
sp|A3KNB6|ODR4_XENLA Protein odr-4 homolog OS=Xenopus laevis GN=...    31   3.9  
sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapien...    31   3.9  
sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7...    30   6.6  
sp|A6NC57|U634D_HUMAN UPF0634 protein D OS=Homo sapiens PE=2 SV=3      30   8.6  
sp|Q09033|FRQ_SORFI Frequency clock protein OS=Sordaria fimicola...    30   8.6  

>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7
           OS=Homo sapiens GN=CHD7 PE=1 SV=3
          Length = 2997

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 71  GRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKTEDESV 199
           GRD P+   + +Q   + A+ P++E  + S SVKK K   E V
Sbjct: 779 GRDSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEV 821


>sp|Q2KHI9|MCM9_MOUSE DNA replication licensing factor MCM9 OS=Mus
            musculus GN=Mcm9 PE=2 SV=2
          Length = 1134

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
 Frame = +2

Query: 50   VVRHKTKGRDK--PTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKT------------- 184
            +  +K++G++K  P +R K  +   + +   +  A +RS  VK+ K              
Sbjct: 768  ISNNKSQGKEKHGPQQRSKLLEAGHLPSSGAM-NAPLRSHGVKRTKASQAVVVSEAGRGD 826

Query: 185  EDESVPRALKRFT*DAENRLCRKI*STRLLKSTVKL 292
            E++SVPR L +   +    +CR     R L  TV L
Sbjct: 827  EEDSVPRRLPKLLKEGSQNVCRSTTRVRPLPPTVPL 862


>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7
           OS=Mus musculus GN=Chd7 PE=2 SV=1
          Length = 2986

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 71  GRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKTEDESV 199
           GRD P+   + +Q   + A+ P++E  + S  VKK K   E V
Sbjct: 769 GRDSPSNTSQSEQQESVDAEGPVVEKIMSSRLVKKQKESGEEV 811


>sp|A3KNB6|ODR4_XENLA Protein odr-4 homolog OS=Xenopus laevis
           GN=odr4 PE=2 SV=1
          Length = 446

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
 Frame = -3

Query: 552 HAKKCLNLHPSGSIWLNIALQT*VDVSRD---------YGADRSRDKIHHLQKSPSDHNA 400
           HA +   + P G + L + L T  D+S+D         +  ++S  K         D + 
Sbjct: 75  HASQVGRMLPGGLMVLGVFLMTTPDLSKDAQTILRKLVFAVEKSSMKNRLWNFDEDDVSE 134

Query: 399 S*TWRTCLSDQKLICNCLENT*NPKITPRSI-----NSRPYSLTVDFNSLVD 259
             T   C S +K+ C   +   +PK TP+       NS    LTVD N  VD
Sbjct: 135 RVTLHICSSTKKITCRTYDIN-DPKSTPKPADWKYQNSVLSWLTVDCNVRVD 185


>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens
            GN=KIF13B PE=1 SV=1
          Length = 1826

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = +2

Query: 74   RDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKTEDES 196
            +D+  +R +RK +N +T ++  ++ Q++    K+ KTED++
Sbjct: 1084 QDRDLERLRRKWLNALTKRQEYLDQQLQKLVSKRDKTEDDA 1124


>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7
           OS=Gallus gallus GN=CHD7 PE=2 SV=1
          Length = 3011

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 71  GRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKTEDESV 199
           GRD P+   + +Q     A+ P++E  + S SVKK     E V
Sbjct: 780 GRDSPSNTSQSEQQESADAEGPVVEKIMSSRSVKKKMENGEEV 822


>sp|A6NC57|U634D_HUMAN UPF0634 protein D OS=Homo sapiens PE=2 SV=3
          Length = 903

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 17/65 (26%), Positives = 37/65 (56%)
 Frame = +2

Query: 62   KTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKTEDESVPRALKRFT*DAENR 241
            K K   +  +RQ +++++    K+ L+EA +  SS ++   EDE+  ++LK+      ++
Sbjct: 834  KEKEEREVVRRQLQREVDDALNKQLLLEAMLEISSERRINLEDEA--QSLKKKLGQMRSQ 891

Query: 242  LCRKI 256
            +C K+
Sbjct: 892  VCMKL 896


>sp|Q09033|FRQ_SORFI Frequency clock protein OS=Sordaria fimicola
           GN=FRQ PE=3 SV=1
          Length = 997

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = -3

Query: 333 NPKITPRSINSRPYSLTV-------DFNSLVDQIFLQSLFSASQVKRFKARGTD 193
           NP   PR   ++ +  TV       DF S++D + +++     ++KR+K  G+D
Sbjct: 131 NPSYPPRDTQTQGFRATVAHSSSADDFRSVIDDLTVENKRLKEELKRYKQFGSD 184
tr_hit_id A9S395
Definition tr|A9S395|A9S395_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 78
Score (bit) 61.2
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914877|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_H03.
         (575 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S395|A9S395_PHYPA Predicted protein OS=Physcomitrella paten...    61   4e-08
tr|Q9LPP3|Q9LPP3_ARATH F18K10.11 protein (Putative uncharacteriz...    54   6e-06
tr|Q9CAF0|Q9CAF0_ARATH Putative uncharacterized protein F13M14.1...    54   6e-06
tr|B4F9L8|B4F9L8_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|A7PHT9|A7PHT9_VITVI Chromosome chr13 scaffold_17, whole genom...    50   7e-05
tr|Q9LGT2|Q9LGT2_ORYSJ cDNA clone:J023063M08, full insert sequen...    50   9e-05
tr|B8ADL8|B8ADL8_ORYSI Putative uncharacterized protein OS=Oryza...    50   9e-05
tr|A2ZQ14|A2ZQ14_ORYSJ Putative uncharacterized protein OS=Oryza...    50   9e-05
tr|A8IJG8|A8IJG8_CHLRE Predicted protein OS=Chlamydomonas reinha...    42   0.018
tr|A1D627|A1D627_NEOFI Mis12-Mtw1 protein, putative OS=Neosartor...    35   2.9  
tr|Q7X504|Q7X504_9LEPT LigB OS=Leptospira kirschneri serovar Gri...    34   5.0  
tr|B8P8S7|B8P8S7_9APHY Predicted protein OS=Postia placenta Mad-...    34   6.5  
tr|B5TXC6|B5TXC6_LEPIN LigB (Fragment) OS=Leptospira interrogans...    33   8.6  
tr|Q6ZWF9|Q6ZWF9_HUMAN cDNA FLJ41163 fis, clone BRACE2039734 (Fr...    33   8.6  

>tr|A9S395|A9S395_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_208212 PE=4 SV=1
          Length = 543

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
 Frame = +2

Query: 8   EANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITA----KRPLIEAQIRSSSVKK 175
           EAN+A AI AGK V  + K KG++KP++R K+KQ+N+ITA    KR L+  Q +S S K 
Sbjct: 464 EANKANAIAAGKEVKEKKKMKGKNKPSRRHKKKQLNVITAEMQIKRDLMAKQ-KSDSKKP 522

Query: 176 AKT---EDESVPRALKRF 220
             T    D S+P AL+RF
Sbjct: 523 TTTVEVNDTSLPLALERF 540


>tr|Q9LPP3|Q9LPP3_ARATH F18K10.11 protein (Putative uncharacterized
           protein At3g10530) OS=Arabidopsis thaliana GN=At3g10530
           PE=2 SV=1
          Length = 536

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +2

Query: 5   LEANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKT 184
           +EA +  AI A K+  +++KTKGR+KP+KR K+K+  +  AKR   E +  ++  K+   
Sbjct: 459 IEAEKEVAIEAAKSTELKNKTKGRNKPSKRTKKKKEMVENAKRTFPEQEHNTAIKKRRIV 518

Query: 185 EDES--VPRALKRF 220
           ED +  +P +LKRF
Sbjct: 519 EDAAAELPTSLKRF 532


>tr|Q9CAF0|Q9CAF0_ARATH Putative uncharacterized protein F13M14.19
           OS=Arabidopsis thaliana GN=F13M14.19 PE=4 SV=1
          Length = 548

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +2

Query: 5   LEANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKT 184
           +EA +  AI A K+  +++KTKGR+KP+KR K+K+  +  AKR   E +  ++  K+   
Sbjct: 471 IEAEKEVAIEAAKSTELKNKTKGRNKPSKRTKKKKEMVENAKRTFPEQEHNTAIKKRRIV 530

Query: 185 EDES--VPRALKRF 220
           ED +  +P +LKRF
Sbjct: 531 EDAAAELPTSLKRF 544


>tr|B4F9L8|B4F9L8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 507

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +2

Query: 5   LEANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKT 184
           +E   A A+ A K    + KTKGR KP+KR K+K+ ++  AKRP +E   +       K 
Sbjct: 430 IEEEMADAVEAAKNTERKKKTKGRSKPSKRAKKKEEDVFKAKRPFLEQSDKVDGRPDKKQ 489

Query: 185 EDESVPRALKRF 220
               +P+AL+RF
Sbjct: 490 RIGELPKALQRF 501


>tr|A7PHT9|A7PHT9_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018070001
           PE=4 SV=1
          Length = 540

 Score = 50.4 bits (119), Expect = 7e-05
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
 Frame = +2

Query: 8   EANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSS--SVKKAK 181
           +A   AA+   K++ +R K KG++KP+K+ K+++  +  AK+P +E Q+     S KK K
Sbjct: 460 KAEMEAAVEDAKSIPLRKKMKGKNKPSKKVKKREEAVARAKKPFLERQMEEENLSTKKQK 519

Query: 182 TEDE-SVPRALKRF 220
              E  +P++L+RF
Sbjct: 520 ISGEIELPKSLQRF 533


>tr|Q9LGT2|Q9LGT2_ORYSJ cDNA clone:J023063M08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0489A01.9 PE=2 SV=1
          Length = 534

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
 Frame = +2

Query: 5   LEANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSS---SVKK 175
           +E     A+ A K++  + KTKGR K +KR K+++  ++ AKRP +E    +      K+
Sbjct: 455 IEEEMEDAVEAAKSIEFKKKTKGRSKASKRAKKREEEVLKAKRPFLEQHKENDGRPDKKQ 514

Query: 176 AKTEDESVPRALKRF 220
             +E+  +P+AL+RF
Sbjct: 515 RVSEEIELPKALQRF 529


>tr|B8ADL8|B8ADL8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00668 PE=4 SV=1
          Length = 534

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
 Frame = +2

Query: 5   LEANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSS---SVKK 175
           +E     A+ A K++  + KTKGR K +KR K+++  ++ AKRP +E    +      K+
Sbjct: 455 IEEEMEDAVEAAKSIEFKKKTKGRSKASKRAKKREEEVLKAKRPFLEQHKENDGRPDKKQ 514

Query: 176 AKTEDESVPRALKRF 220
             +E+  +P+AL+RF
Sbjct: 515 RVSEEIELPKALQRF 529


>tr|A2ZQ14|A2ZQ14_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000636 PE=4 SV=1
          Length = 560

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
 Frame = +2

Query: 5   LEANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSS---SVKK 175
           +E     A+ A K++  + KTKGR K +KR K+++  ++ AKRP +E    +      K+
Sbjct: 481 IEEEMEDAVEAAKSIEFKKKTKGRSKASKRAKKREEEVLKAKRPFLEQHKENDGRPDKKQ 540

Query: 176 AKTEDESVPRALKRF 220
             +E+  +P+AL+RF
Sbjct: 541 RVSEEIELPKALQRF 555


>tr|A8IJG8|A8IJG8_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_144515 PE=4 SV=1
          Length = 543

 Score = 42.4 bits (98), Expect = 0.018
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
 Frame = +2

Query: 8   EANRAAAIMAGKAVVVRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKTE 187
           +AN A      +    + K KG++KP++R ++KQ NII  ++P I+ + +  + ++ +  
Sbjct: 462 DANAARMAALRREQENKVKMKGKNKPSRRHRKKQSNIIEDRKPTIKERQKEEATRRKEAA 521

Query: 188 D--------ESVPRALKRF 220
                    ES P+A++RF
Sbjct: 522 QKKADSVIPESAPKAVRRF 540


>tr|A1D627|A1D627_NEOFI Mis12-Mtw1 protein, putative OS=Neosartorya
           fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181)
           GN=NFIA_063320 PE=4 SV=1
          Length = 587

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +2

Query: 53  VRHKTKGRDKPTKRQKRKQMNIITAKRPLIEAQIRSSSVKKAKTEDESVPRALKR 217
           V H  K  +   KRQ R++ + +T   P  ++  RSS+ K+ +T  ESVP+  KR
Sbjct: 143 VEHTEKSAEVTGKRQTRRRRSAVTEPEPQPQSVTRSSTRKREET--ESVPKEKKR 195