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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914857
Clone id YMU001_000063_F06
Library
Length 323
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATGAGCACTGTCACCTCCATTCTTATGTGACACCTCTTTCTTTGAGGATGCAGCCATCC
CTTCTGCTTCGTCGAGGCATTTTAGATCCTTGCTCTGAGGTCTTTGCTTGAGATTGAAAT
CTTCTCCATCAGCATTTGACACAGCATAATCTTGCATGTCCTCAAGCGCATTGGCAGGCT
GCAACTCCTCTGTAGGGGCATCCATCCAGATCTCAGCTAACATTGTTGAGTATCTCTCTG
TTTGACCAACAAGAAAATCAAGATGCTTGTCCAGCGCTTTTTTCTTGATGCCTTCAAGCA
CCATTTGGTGCTTATACATAATC
■■Homology search results ■■ -
sp_hit_id Q6ZRS2
Definition sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens
Align length 37
Score (bit) 47.8
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914857|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_F06.
         (310 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE...    48   2e-05
sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster G...    48   2e-05
sp|Q9NX46|ARHL2_HUMAN Poly(ADP-ribose) glycohydrolase ARH3 OS=Ho...    30   4.9  
sp|O61379|TPM_PANST Tropomyosin OS=Panulirus stimpsoni PE=1 SV=1       29   6.4  
sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN...    29   6.4  
sp|P62135|RAD50_NANEQ DNA double-strand break repair rad50 ATPas...    29   8.3  
sp|O50236|CARB_ZYMMO Carbamoyl-phosphate synthase large chain OS...    29   8.3  
sp|P16568|BICD_DROME Protein bicaudal D OS=Drosophila melanogast...    29   8.3  
sp|P49960|PRP24_YEAST U4/U6 snRNA-associated-splicing factor PRP...    29   8.4  

>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1
           SV=2
          Length = 3230

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 199
           + +K Q  LE  +KKALD HLDF+VGQTE+YS +L++
Sbjct: 213 VQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQ 249


>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster
           GN=dom PE=1 SV=2
          Length = 3198

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAPTEELQPANALEDMQDYA 130
           + YKHQ  +E  +K+ALD+HL F+V QTE++S  L E       + +    +L   +  +
Sbjct: 596 VEYKHQTKIEEKRKQALDQHLSFIVDQTEKFSQQLVE----GMNKSVADTPSLNSSRLTS 651

Query: 129 VSNADGEDFNLKQRPQS---KDLKCLDEAEGMAASSKKEVS 16
                 +DF    RP+S    D + + +AE  AA  K+EV+
Sbjct: 652 PKRESDDDF----RPESGSEDDEETIAKAEEDAADVKEEVT 688


>sp|Q9NX46|ARHL2_HUMAN Poly(ADP-ribose) glycohydrolase ARH3 OS=Homo
           sapiens GN=ADPRHL2 PE=1 SV=1
          Length = 363

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 153 LEDMQDYAVSNADGEDFNLKQRPQSKDLKCLDEAEGMAASSKKEVSHKNG 4
           +ED++  A S  D  +  +++RP S  LK + E    A+ +++EV  + G
Sbjct: 219 MEDLEGDAQSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELG 268


>sp|O61379|TPM_PANST Tropomyosin OS=Panulirus stimpsoni PE=1 SV=1
          Length = 274

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 192 MDAPTEELQPANALEDMQDYAVSNADGEDFNLKQRPQ--SKDLKCLDEAEGMAASSKKEV 19
           +D   E L  AN   + +D A+SNA+GE   L +R Q   +DL+  +E    A +   E 
Sbjct: 47  LDQVQESLLKANTQLEEKDKALSNAEGEVAALNRRIQLLEEDLERSEERLNTATTKLAEA 106

Query: 18  S 16
           S
Sbjct: 107 S 107


>sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans
           GN=ssl-1 PE=2 SV=4
          Length = 2395

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 288 VLEGIKKKALDKHLDFLVGQTERYSTMLAE 199
           VLE   +KA +KHL F++GQ +  S ++ E
Sbjct: 323 VLESRLRKARNKHLMFVIGQVDEMSNIVQE 352


>sp|P62135|RAD50_NANEQ DNA double-strand break repair rad50 ATPase
           OS=Nanoarchaeum equitans GN=rad50 PE=3 SV=1
          Length = 786

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -2

Query: 276 IKKKALDKHLDFLVGQTERYSTMLAE 199
           IKK AL++ L+ L+ + ERY+++L E
Sbjct: 547 IKKPALERELNLLLKELERYNSLLKE 572


>sp|O50236|CARB_ZYMMO Carbamoyl-phosphate synthase large chain
           OS=Zymomonas mobilis GN=carB PE=3 SV=2
          Length = 1112

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 240 LVGQTERYSTMLAEIWMDAPTEELQPANALEDMQDYAVSNADGEDFNLKQRP 85
           L    ER+S +++E+ +      LQPAN +   +D A+S AD   + +  RP
Sbjct: 708 LAEDRERFSALVSELGL------LQPANGIARSRDEAISVADKIGYPILIRP 753


>sp|P16568|BICD_DROME Protein bicaudal D OS=Drosophila melanogaster
           GN=BicD PE=1 SV=2
          Length = 782

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = -2

Query: 285 LEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAPTEELQPANAL-----EDMQDYAVSN 121
           L+ I +K +++ L+ L G+ E    +  E+      E +   + L      +M+D A +N
Sbjct: 228 LKKIAEKQMEEALETLQGEREAKYALKKELDGHLNRESMYHISNLAYSIRSNMEDNASNN 287

Query: 120 ADGEDFNLKQRPQSKDL 70
           +DGE+ NL  +    DL
Sbjct: 288 SDGEEENLALKRLEADL 304


>sp|P49960|PRP24_YEAST U4/U6 snRNA-associated-splicing factor PRP24
           OS=Saccharomyces cerevisiae GN=PRP24 PE=1 SV=1
          Length = 444

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 170 CSLPMRLRTCKIMLCQMLMEKISISSKDLR 81
           C  P+  +    ++CQ L E+I I+ KD+R
Sbjct: 315 CLFPLSDKVSPSLICQFLQEEIHINEKDIR 344
tr_hit_id A5AP91
Definition tr|A5AP91|A5AP91_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 77
Score (bit) 64.7
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914857|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_F06.
         (310 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AP91|A5AP91_VITVI Putative uncharacterized protein OS=Vitis...    65   2e-09
tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family DNA-dep...    62   2e-08
tr|Q7X9V2|Q7X9V2_ARATH Photoperiod independent early flowering1 ...    59   9e-08
tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early fl...    59   9e-08
tr|B8AGS2|B8AGS2_ORYSI Putative uncharacterized protein OS=Oryza...    59   9e-08
tr|A3AAA0|A3AAA0_ORYSJ Putative uncharacterized protein OS=Oryza...    59   9e-08
tr|A9U2Y8|A9U2Y8_PHYPA SWR1 complex protein, SNF2 family DNA-dep...    59   2e-07
tr|Q9LTV5|Q9LTV5_ARATH Helicase-like protein OS=Arabidopsis thal...    58   3e-07
tr|B3NJL6|B3NJL6_DROER GG22110 OS=Drosophila erecta GN=GG22110 P...    49   1e-04
tr|Q3U4M6|Q3U4M6_MOUSE Putative uncharacterized protein OS=Mus m...    49   1e-04
tr|B4MJU2|B4MJU2_DROWI GK20897 OS=Drosophila willistoni GN=GK208...    49   2e-04
tr|B4GI08|B4GI08_DROPE GL16840 OS=Drosophila persimilis GN=GL168...    49   2e-04
tr|B5E1L0|B5E1L0_DROPS GA24314 OS=Drosophila pseudoobscura pseud...    48   2e-04
tr|B3MBX4|B3MBX4_DROAN GF12812 OS=Drosophila ananassae GN=GF1281...    48   2e-04
tr|Q8MLW2|Q8MLW2_DROME Domino, isoform D OS=Drosophila melanogas...    48   3e-04
tr|B5RJR0|B5RJR0_DROME LP03212p (Fragment) OS=Drosophila melanog...    48   3e-04
tr|B5RJJ7|B5RJJ7_DROME LD35056p (Fragment) OS=Drosophila melanog...    48   3e-04
tr|B4P902|B4P902_DROYA Domino OS=Drosophila yakuba GN=Dyak\dom P...    48   3e-04
tr|Q6P4A2|Q6P4A2_HUMAN SRCAP protein (Fragment) OS=Homo sapiens ...    48   3e-04
tr|B0JZA6|B0JZA6_HUMAN SRCAP protein OS=Homo sapiens GN=SRCAP PE...    48   3e-04
tr|B4QG22|B4QG22_DROSI GD11588 OS=Drosophila simulans GN=GD11588...    47   4e-04
tr|B4I7P3|B4I7P3_DROSE GM15831 OS=Drosophila sechellia GN=GM1583...    47   4e-04
tr|Q4SFE5|Q4SFE5_TETNG Chromosome 2 SCAF14604, whole genome shot...    47   5e-04
tr|Q17L58|Q17L58_AEDAE E1a binding protein P400 OS=Aedes aegypti...    47   6e-04
tr|B4LLH7|B4LLH7_DROVI GJ20044 OS=Drosophila virilis GN=GJ20044 ...    46   0.001
tr|B4KRF8|B4KRF8_DROMO GI19071 OS=Drosophila mojavensis GN=GI190...    46   0.001
tr|B4J6Z7|B4J6Z7_DROGR GH20710 OS=Drosophila grimshawi GN=GH2071...    46   0.001
tr|B0WLJ6|B0WLJ6_CULQU E1a binding protein P400 OS=Culex quinque...    46   0.001
tr|Q28EN0|Q28EN0_XENTR Novel protein (Fragment) OS=Xenopus tropi...    45   0.002
tr|B7QDK0|B7QDK0_IXOSC E1A-binding protein p400, putative (Fragm...    45   0.002

>tr|A5AP91|A5AP91_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028854 PE=4 SV=1
          Length = 526

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 36/77 (46%), Positives = 47/77 (61%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAPTEELQPANALEDMQDYA 130
           ++YKHQM L+  KKKALDK L+FL+GQTERYSTMLAE   D      QP       +  +
Sbjct: 143 VLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLADT----YQPTQQYLPKERCS 198

Query: 129 VSNADGEDFNLKQRPQS 79
           +   + +D   K+ PQS
Sbjct: 199 IQYKEVDDPGFKEVPQS 215


>tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family
           DNA-dependent ATPase (Fragment) OS=Physcomitrella patens
           subsp. patens GN=CHR1515 PE=4 SV=1
          Length = 1780

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 30/44 (68%), Positives = 35/44 (79%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAPT 178
           + YK Q+++E  KKKALDKHLDFL+GQTERYSTMLAE   D  T
Sbjct: 98  VSYKQQLLVEERKKKALDKHLDFLLGQTERYSTMLAENLADNTT 141


>tr|Q7X9V2|Q7X9V2_ARATH Photoperiod independent early flowering1
           OS=Arabidopsis thaliana GN=PIE1 PE=1 SV=1
          Length = 2055

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMD-------APTEELQPANAL 151
           ++YKHQ+V    KKKA+DK L+FL+GQTERYSTMLAE  ++        P++ L    + 
Sbjct: 124 VLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKQGQNTPSKPLLTIESK 183

Query: 150 EDMQ-----DYAVSNADGEDFNLKQRPQSKDLKCLDEAEGMAASSKKEVSH 13
            D +        ++++ G +    +  +  DLK  DE E    + +++  H
Sbjct: 184 SDEERAEQIPPEINSSAGLESGSPELDEDYDLKSEDETEDDEDTIEEDEKH 234


>tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early
           flowering1 OS=Oryza sativa subsp. japonica
           GN=OJ1743_B12.28 PE=4 SV=1
          Length = 2021

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMD 187
           + YK+Q+ LE  KKKALDK LDFL+GQTERYSTMLAE  +D
Sbjct: 112 VFYKNQLELEERKKKALDKQLDFLLGQTERYSTMLAENLVD 152


>tr|B8AGS2|B8AGS2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08529 PE=4 SV=1
          Length = 1765

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMD 187
           + YK+Q+ LE  KKKALDK LDFL+GQTERYSTMLAE  +D
Sbjct: 85  VFYKNQLELEERKKKALDKQLDFLLGQTERYSTMLAENLVD 125


>tr|A3AAA0|A3AAA0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007722 PE=4 SV=1
          Length = 2202

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMD 187
           + YK+Q+ LE  KKKALDK LDFL+GQTERYSTMLAE  +D
Sbjct: 149 VFYKNQLELEERKKKALDKQLDFLLGQTERYSTMLAENLVD 189


>tr|A9U2Y8|A9U2Y8_PHYPA SWR1 complex protein, SNF2 family
           DNA-dependent ATPase (Fragment) OS=Physcomitrella patens
           subsp. patens GN=CHR1545 PE=4 SV=1
          Length = 1727

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTE-RYSTMLAEIWMDAPTE-ELQPANAL 151
           + YK Q+++E  KKKALDKHLDFL+GQTE RYSTMLAE   D  T  ELQ +  L
Sbjct: 85  VSYKQQLLVEERKKKALDKHLDFLLGQTESRYSTMLAENLADTTTTYELQISQPL 139


>tr|Q9LTV5|Q9LTV5_ARATH Helicase-like protein OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 2061

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 199
           ++YKHQ+V    KKKA+DK L+FL+GQTERYSTMLAE
Sbjct: 124 VLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAE 160


>tr|B3NJL6|B3NJL6_DROER GG22110 OS=Drosophila erecta GN=GG22110 PE=4
           SV=1
          Length = 3193

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAPTEELQPANALEDMQDYA 130
           + YKHQ  +E  +K+ALD+HL F+V QTE++S  LAE       + +    +L   +  +
Sbjct: 592 VEYKHQTKIEEKRKQALDQHLSFIVDQTEKFSQQLAE----GMNKSVADTPSLNSSRLTS 647

Query: 129 VSNADGEDFNLKQRPQS---KDLKCLDEAEGMAASSKKEVS 16
                 +DF    RP+S    D + + +AE  AA  K+EV+
Sbjct: 648 PKRESDDDF----RPESGSEDDEETIAKAEEDAADVKEEVT 684


>tr|Q3U4M6|Q3U4M6_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Srcap PE=2 SV=1
          Length = 936

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = -2

Query: 309 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAPTEELQPANALEDMQDYA 130
           + +K Q  LE  +KKALD HLDF+VGQTE+YS +L++     P      ++        A
Sbjct: 194 VQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPPASSKAGSSPCLGSSSAA 253

Query: 129 ------VSNADGEDFNLKQRPQSKDLKCLDEAEGMAASSKKE 22
                 VS  D ED + + + + ++    D+ E +    ++E
Sbjct: 254 SSPPPPVSRLDDEDGDFQPQEEEEE----DDEETIEVEEQQE 291