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NBDC - LSDB Archive
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BP914783
Clone id YMU001_000062_G12
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACAGAGCAAGCTCACACATAAAACGGGCATTGCAAGCCCCAAAATCTCTCAATCAGCGT
CATCGCCCCAATCGGGCCTCTCTCAAGGTTGTTTACTTTACTCCCAAGAATGACTACATA
TGAAGTGTGCACAAGTACATTCAGGGCAATTAGGAGAGTTTGCGCTGAGCGAGTACCAGA
ATTACTCATTTTGTGGACATGTGAATACACAAGGTTCGACAGCAGCTGGCAAGAGGTCCT
CTCCAACAGGCAAAGCTTTTCTTTCACAGCCTCCTTGTGCACAAAATGCTGTCTCTGCCC
TCCTTCAAATAGAAATACCTTATGGATCAAGTGCACCCATCTCACCAAGATCCTCTATAC
ACAGTAACTTTCCTCTAGATTATGACACATTTTGCCTCACAGACAATTCCTACGAAGAAT
CCAGCGTGCCTTCCACAAGATCATCATTTGCACTTGATGCCCC
■■Homology search results ■■ -
sp_hit_id Q685J3
Definition sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens
Align length 84
Score (bit) 31.6
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914783|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_G12.
         (463 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1      32   1.7  
sp|Q7Z4L5|TT21B_HUMAN Tetratricopeptide repeat protein 21B OS=Ho...    32   1.8  
sp|P19382|SNAI1_XENLA Protein snail homolog Sna OS=Xenopus laevi...    31   2.9  
sp|Q6P5D8|SMHD1_MOUSE Structural maintenance of chromosomes flex...    31   2.9  
sp|Q8CBY3|LENG8_MOUSE Leukocyte receptor cluster member 8 homolo...    31   2.9  
sp|Q9R9J1|MYCA_BACSU Mycosubtilin synthetase subunit A OS=Bacill...    30   5.1  
sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN...    30   5.1  
sp|Q9YW29|ETF2_MSEPV Early transcription factor 82 kDa subunit O...    30   6.7  
sp|O94720|YCF8_SCHPO GATA zinc finger domain-containing protein ...    29   8.5  
sp|Q9NRQ2|PLS4_HUMAN Phospholipid scramblase 4 OS=Homo sapiens G...    29   8.7  
sp|Q9JKK8|ATR_MOUSE Serine/threonine-protein kinase ATR OS=Mus m...    29   8.7  
sp|Q13535|ATR_HUMAN Serine/threonine-protein kinase ATR OS=Homo ...    29   8.7  

>sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1
          Length = 4493

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 22/84 (26%), Positives = 40/84 (47%)
 Frame = +3

Query: 204  NTQGSTAAGKRSSPTGKAFLSQPPCAQNAVSALLQIEIPYGSSAPISPRSSIHSNFPLDY 383
            +T G+T+A   SSPT    +S P    +     L+  IP  ++   +  +S  S  P+D 
Sbjct: 1424 STPGTTSAEATSSPTTAEGISIPTSTPSEGKTPLK-SIPVSNTPVANSEASTLSTTPVDS 1482

Query: 384  DTFCLTDNSYEESSVPSTRSSFAL 455
            ++  +T  +   S  P+  +S A+
Sbjct: 1483 NSPVVTSTAVSSSPTPAEGTSIAI 1506



 Score = 29.3 bits (64), Expect = 8.5
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = +3

Query: 204  NTQGSTAAGKRSSPTGKAFLSQPPCAQNAVSALLQIEIPYGSSAPISPRSSIHSNFPLDY 383
            +T  +T +   SSPT     S P    +  S  L   +P  +   +S  +S HS  P+D 
Sbjct: 2366 STPVTTYSQAGSSPTTADDTSMPTSTYSEGSTPLT-SVPVSTMPVVSSEASTHSTTPVDT 2424

Query: 384  DTFCLTDNSYEESSVPST 437
             T   T  S E SS P+T
Sbjct: 2425 STPVTT--STEASSSPTT 2440


>sp|Q7Z4L5|TT21B_HUMAN Tetratricopeptide repeat protein 21B OS=Homo
            sapiens GN=TTC21B PE=2 SV=1
          Length = 1316

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = -2

Query: 390  MCHNLEESYCV*RILVRWVHLIHKVFLFEGGQRQHFVHKEAVKEKLCLLERTSCQLLSNL 211
            +C++L E      + ++W     KV        QH +  E V E   L+E   CQ+L   
Sbjct: 791  LCYDLAELL----LKLKWYDKAEKVL-------QHALAHEPVNELSALMEDGRCQVLLAK 839

Query: 210  VYSHVHKMSNSGTRSAQTLLIALNVL 133
            VYS + K+ ++ T   Q   +   VL
Sbjct: 840  VYSKMEKLGDAITALQQARELQARVL 865


>sp|P19382|SNAI1_XENLA Protein snail homolog Sna OS=Xenopus laevis
           GN=snai1 PE=2 SV=1
          Length = 259

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 333 APISPRSSIHSNFPLDYDTFCLTDNSYEESSVPSTRSS 446
           +PISP SS  S+ PLD  +F   D   + S  PS  SS
Sbjct: 75  SPISPSSSDDSSKPLDLTSFSSEDEGGKTSDPPSPASS 112


>sp|Q6P5D8|SMHD1_MOUSE Structural maintenance of chromosomes
           flexible hinge domain-containing protein 1 OS=Mus
           musculus GN=Smchd1 PE=2 SV=2
          Length = 2007

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -3

Query: 353 GSW*DGCT*SIRYFYL--KEGRDSILCTRRL*KKSFACWRGPLASCCRTLCIHMSTK*VI 180
           GS  DG     R  YL  + G+DS L  R L     A + G  AS C+T+ I    K VI
Sbjct: 15  GSGRDGAVDGCRTVYLFDRRGKDSELGDRALQVSEHADYAGFRASVCQTIGISSEEKFVI 74

Query: 179 LVLAQRKLS 153
              ++++++
Sbjct: 75  TTTSRKEIT 83


>sp|Q8CBY3|LENG8_MOUSE Leukocyte receptor cluster member 8 homolog
           OS=Mus musculus GN=Leng8 PE=2 SV=1
          Length = 785

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
 Frame = +3

Query: 159 FALSEYQNY---SFCGHVNTQGSTAAGKRSSPTGKAFLSQPPCAQNAVSALLQI---EIP 320
           + +S YQ+Y   S  G  ++ GS  A + S+P  +  L+QPP      S   Q    ++P
Sbjct: 104 YPMSMYQSYGSPSQYGMASSYGSATAQQPSAPQHQGTLNQPPVPGMDESMAYQASPQQLP 163

Query: 321 YGSSAPISPRSSIHSNFPLDYDTFCLTDNSYEESSVPSTRSSFA 452
             ++ P  P +S H    L         N  +  + PST+ S A
Sbjct: 164 --AAQPPQPSNSQHGTHSL--------SNGPQPGTAPSTQHSQA 197


>sp|Q9R9J1|MYCA_BACSU Mycosubtilin synthetase subunit A OS=Bacillus
            subtilis GN=mycA PE=3 SV=1
          Length = 3971

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 243  ERTSCQLLSNLVYSHVHKMSNSGTRSAQTLLIALNVLVHT---SYVVILGSKVNNLERGP 73
            +R +C L S+L+ S        GT     LL A NVL+H       +++G+ V+   +  
Sbjct: 2703 QRVTCSLQSSLIRSLQEMAQQKGTTLYMVLLAAYNVLLHKYTGQEDIVVGTPVSGRNQPN 2762

Query: 72   IGAM 61
            I +M
Sbjct: 2763 IESM 2766


>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus
           GN=Lama5 PE=1 SV=3
          Length = 3718

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
 Frame = -1

Query: 286 FCAQGGCERKALPVGEDLLPAAVEPCVF-------TCPQNE*FWYSLSANSP-NCPECTC 131
           +C  G C    L      LP    PC+        +C + +  ++ LSA++P  C  C+C
Sbjct: 725 YCEAGSCHPAGLAPANPALPETQAPCMCRAHVEGPSCDRCKPGYWGLSASNPEGCTRCSC 784


>sp|Q9YW29|ETF2_MSEPV Early transcription factor 82 kDa subunit
           OS=Melanoplus sanguinipes entomopoxvirus GN=VETFL PE=3
           SV=1
          Length = 760

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 LCTKCCLCPPSNRNTLWIKCTHLTKILYTQ 364
           +C  CC   P  R+T++  C H TK ++ +
Sbjct: 470 ICYPCCYSKPKIRDTIFNTCVHGTKFIHEE 499


>sp|O94720|YCF8_SCHPO GATA zinc finger domain-containing protein
           C1393.08 OS=Schizosaccharomyces pombe GN=SPCC1393.08
           PE=2 SV=1
          Length = 557

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
 Frame = +3

Query: 123 KCAQVHSGQLGEFALSEYQNYSFCGHVNTQGSTAAGKRSSPTGKAFLSQPPCAQNAVSAL 302
           +C+ + S QLG+  L +    S   H++   + ++ K S PT      Q PC     SAL
Sbjct: 120 QCSDLESAQLGDSGLLKSTILSN-SHIDI-AALSSSKTSEPTPPFSYVQTPCIPTPSSAL 177

Query: 303 LQIEIP------YG---SSAPISPRS 353
           +    P      +G   S AP+ P S
Sbjct: 178 IDTPFPGALDSEFGFDESQAPLFPAS 203


>sp|Q9NRQ2|PLS4_HUMAN Phospholipid scramblase 4 OS=Homo sapiens
           GN=PLSCR4 PE=2 SV=2
          Length = 329

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 218 DSSWQEVLSNRQSFSFTASLCTKCCLCPPSNRNTLWIKC 334
           D   +E+++ ++ F      CT CC C PS R  L ++C
Sbjct: 180 DCMGREIMTMQRPFR-----CTCCCFCCPSARQELEVQC 213
tr_hit_id Q00355
Definition tr|Q00355|Q00355_COPCI A mating type protein OS=Coprinopsis cinerea
Align length 109
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914783|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_G12.
         (463 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q00355|Q00355_COPCI A mating type protein OS=Coprinopsis cine...    36   1.1  
tr|B4WX05|B4WX05_9GAMM Putative uncharacterized protein OS=Alcan...    34   4.1  
tr|A4I3R6|A4I3R6_LEIIN Putative uncharacterized protein OS=Leish...    34   4.1  
tr|O69526|O69526_MYCLE Putative membrane protein OS=Mycobacteriu...    33   5.4  
tr|B2JJ05|B2JJ05_BURP8 Flagellar hook-length control protein OS=...    33   5.4  
tr|B8ZU47|B8ZU47_MYCLE Putative membrane protein OS=Mycobacteriu...    33   5.4  
tr|B6KAV7|B6KAV7_TOXGO Putative uncharacterized protein OS=Toxop...    33   5.4  
tr|B0EFY8|B0EFY8_ENTDI AMP deaminase, putative OS=Entamoeba disp...    33   5.4  
tr|Q3TRP2|Q3TRP2_MOUSE Putative uncharacterized protein OS=Mus m...    33   7.0  
tr|Q72AD4|Q72AD4_DESVH Putative uncharacterized protein OS=Desul...    33   7.0  
tr|A1VCL9|A1VCL9_DESVV Putative uncharacterized protein OS=Desul...    33   7.0  
tr|A1TDD7|A1TDD7_MYCVP Transcriptional regulator, IclR family OS...    33   7.0  
tr|Q7SAU6|Q7SAU6_NEUCR Predicted protein OS=Neurospora crassa GN...    33   7.0  
tr|Q6MFW2|Q6MFW2_NEUCR Putative uncharacterized protein B2H10.02...    33   7.0  
tr|Q8ILS6|Q8ILS6_PLAF7 Putative uncharacterized protein OS=Plasm...    33   9.2  

>tr|Q00355|Q00355_COPCI A mating type protein OS=Coprinopsis cinerea
           GN=d1-1 PE=3 SV=1
          Length = 633

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
 Frame = +3

Query: 150 LGEFALSEYQNYSFCGHVNTQGSTAAGKRSSPTGKAFLSQPPCAQNAVSALLQIEIPYG- 326
           LG+       ++    H + Q S    +RS P    F      A N  + +LQ ++P   
Sbjct: 491 LGDSVAEAIPSFPLSAHASVQWSPLLDRRSLPDTLLFT-----AVNTYNPVLQFDLPPST 545

Query: 327 ----SSAPISPRSSIHSNFPLDYDTFCLTDNSYEESSVPSTRSSFALDA 461
               SSA I P  S  S    D DTF      ++  SVP + +SF L A
Sbjct: 546 DIQPSSATIPPMLSSSS---FDPDTFATDPQFFDLFSVPISAASFDLPA 591


>tr|B4WX05|B4WX05_9GAMM Putative uncharacterized protein
           OS=Alcanivorax sp. DG881 GN=ADG881_816 PE=4 SV=1
          Length = 749

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 219 TAAGKRSSPTGKAFLSQPPCAQNAVSALLQIEIPYGSSAPISPRSSIH 362
           T  G +  P G A    P  A  A  A++Q  +PY + AP++  +S+H
Sbjct: 272 TMRGMQGGPGGGASGGAPGVASEAAMAVMQNGVPYMNGAPVANAASVH 319


>tr|A4I3R6|A4I3R6_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ28.1960 PE=4 SV=1
          Length = 578

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 219 TAAGKRSSPTGKAFLSQP-PCAQNAVSALLQIEIPYGSSAPISPRSSIHSNFPLDYDTFC 395
           TAA   S+P  + +LS   P A ++ S          S AP++ R+S+ ++ P+  D  C
Sbjct: 421 TAAVNFSAPPARLWLSTAHPAASHSRSNTSDSADLESSDAPVNHRTSMTAD-PVHLDMSC 479

Query: 396 LTDNSYEESSVPSTRSSF 449
            T  S   SS PST  +F
Sbjct: 480 ATSVSSAPSSTPSTLEAF 497


>tr|O69526|O69526_MYCLE Putative membrane protein OS=Mycobacterium
           leprae GN=MLCB2548.03c PE=4 SV=1
          Length = 432

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 129 AQVHSGQLGEFALS----EYQNYSFCGHVNTQGSTAAGKRSSPTGKAFLSQPP 275
           AQ HSG  G  A S    EY+ YS  G +  +GST   + + P G AF  QPP
Sbjct: 321 AQQHSGS-GRRARSRHSAEYRAYSIEG-ITAKGSTPISQPTPPAGPAFAEQPP 371


>tr|B2JJ05|B2JJ05_BURP8 Flagellar hook-length control protein
           OS=Burkholderia phymatum (strain DSM 17167 / STM815)
           GN=Bphy_2936 PE=3 SV=1
          Length = 503

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +3

Query: 204 NTQGSTAAGKRSSPTGKAF---LSQPPCAQNAVSALLQIEIPYGSSAPISPRSSIHSNFP 374
           +T GS+A+   ++ +   F   L Q   AQN  +A      P   S P S  SS+H   P
Sbjct: 16  STSGSSASNGANAGSALPFSTTLQQSINAQNLAAAPAPSPAPSAPSQPASNGSSVHDAPP 75

Query: 375 LDYDTFCLTDNSYEESSVPSTRSSFALDA 461
            D D+   TD S   +S  ST+++   D+
Sbjct: 76  AD-DSSNSTDASDSSNSTGSTQAASQTDS 103


>tr|B8ZU47|B8ZU47_MYCLE Putative membrane protein OS=Mycobacterium
           leprae Br4923 GN=MLBr00228 PE=4 SV=1
          Length = 432

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 129 AQVHSGQLGEFALS----EYQNYSFCGHVNTQGSTAAGKRSSPTGKAFLSQPP 275
           AQ HSG  G  A S    EY+ YS  G +  +GST   + + P G AF  QPP
Sbjct: 321 AQQHSGS-GRRARSRHSAEYRAYSIEG-ITAKGSTPISQPTPPAGPAFAEQPP 371


>tr|B6KAV7|B6KAV7_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_056940 PE=4 SV=1
          Length = 1038

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +3

Query: 210 QGSTAAGKRSS--PTGKAFLSQPPCAQNAVSALLQIEIPYGSSAPISPRSSIHSNFPLDY 383
           Q S   G  SS  P+  +  S PP + ++ S+LL       SS+P S  SS  S+  L  
Sbjct: 556 QNSCLHGDSSSSLPSSSSSSSSPPSSSSSSSSLLSSS----SSSPPSSSSSSSSSSSLPS 611

Query: 384 DTFCLTDNSYEESSVPSTRSSFA 452
            +   + +S   SS+PS+ SS +
Sbjct: 612 SSSSSSSSSSSSSSLPSSSSSLS 634


>tr|B0EFY8|B0EFY8_ENTDI AMP deaminase, putative OS=Entamoeba dispar
            SAW760 GN=EDI_001660 PE=4 SV=1
          Length = 1301

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +3

Query: 264  SQPPCAQNAVSALLQIEIPYGSSAPISPRSSIHSNFPLDYDTFCLTDNSYEESSVPSTRS 443
            ++ P  +   SA+   ++     A I   S + S+F  D    CLT    E SSVP TR 
Sbjct: 1203 TKEPLVEEYASAIKIFKLTASDIAEIVQNSLLISSFSADTKQNCLTTEEGESSSVPQTRL 1262

Query: 444  SF 449
             F
Sbjct: 1263 QF 1264


>tr|Q3TRP2|Q3TRP2_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Kcnb2 PE=2 SV=1
          Length = 112

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 303 GGQRQHFVHKEAVKEKLCLLERT----SCQLLSNLVYSHVHKMSNS 178
           GG   H  H    K KL LL R+    S Q +SNLV SHVH   NS
Sbjct: 63  GGYPAHQTHLALWKSKLQLLMRSCRLCSLQDVSNLVGSHVHPKGNS 108


>tr|Q72AD4|Q72AD4_DESVH Putative uncharacterized protein
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=DVU_2063 PE=4 SV=1
          Length = 984

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 74  GPLSRLFTLLPRMTTYEVCTSTFRAIRRVCAERVPELLILWTCE-YTRFDSSWQ---EVL 241
           G   RLF  L R    ++C  T  A+ R+  ERV      WTCE + R+ +SW+   E+L
Sbjct: 226 GTEERLFEHLWRHCGADICLHTDAAVARMGQERVH-----WTCEDHVRWLTSWRAEAELL 280

Query: 242 SNRQSFSFTASLC 280
              ++F    S C
Sbjct: 281 HAPRAFKPRVSFC 293