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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914678
Clone id YMU001_000061_F10
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACAGGGCTACAGGACATGTGTCGGCCGGCTGTATGCAGTCGGGATAGGGATTTGCGAGT
GAAGATGACGAACTGTTCTAGGTTCGCAGGGATGGGGCAGGTTATAGCGCAGGCAAATTA
TGGGCCTGAAGATACGTGCATATGCACTCGAGCTGGCGAATGGAGTCGGGGTTGGTGTAA
GCCGAAATATAGCTGAGCAGGGTGGGGCTATGTATGCCTTGTGGTCATATATGAGACCTG
CAAAGCCACGCATATGTGGTGGTGAGCGGTGGGAAAGCAAGAGGAGGCAAGAGCAAGCAG
TAGGCAGGTGCTGCAGAATAAGTGGTGGGCAGCCCTTTGAAGGATTCAAATTGAAGTGGC
GAGGTATGCTTGGGGAGTGAACAGAGAAGCAAGTTACGTGTAGCCACCTCAAAGGTGATA
ATATCAACAATCTAAGTACTCTCCTATTTCCACCTCACTATTCCAAAACAAGTGTCG
■■Homology search results ■■ -
sp_hit_id O14269
Definition sp|O14269|YFPE_SCHPO Uncharacterized protein C7D4.14c OS=Schizosaccharomyces pombe
Align length 81
Score (bit) 31.2
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914678|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_F10.
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14269|YFPE_SCHPO Uncharacterized protein C7D4.14c OS=Schizos...    31   2.5  
sp|Q7RVN0|RL11_NEUCR 60S ribosomal protein L11 OS=Neurospora cra...    30   5.5  
sp|A4T0N2|OXAA_POLSQ Membrane protein oxaA OS=Polynucleobacter s...    30   7.2  
sp|Q5QJC3|DCR1B_CHICK DNA cross-link repair 1B protein OS=Gallus...    30   7.2  
sp|Q6WN34|CRDL2_HUMAN Chordin-like protein 2 OS=Homo sapiens GN=...    30   7.2  

>sp|O14269|YFPE_SCHPO Uncharacterized protein C7D4.14c
           OS=Schizosaccharomyces pombe GN=SPAC7D4.14c PE=1 SV=1
          Length = 551

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -3

Query: 262 PPHMRG---FAGLIYDHKAYIAPPCSAIFRLTPTPTPFASSSAYARIFRPIICLRYNLPH 92
           PP +R    + G     K+   PP + I RL  +P+ F++ S            RYN   
Sbjct: 403 PPGIRNSVDYDGTFLSRKSL--PPYNGIHRLHESPSQFSNQS------------RYNWEP 448

Query: 91  PCEPRTVRHLHSQIPIPTAYS 29
             E R++ HL+   PI T YS
Sbjct: 449 ILENRSLLHLNRPPPIETHYS 469


>sp|Q7RVN0|RL11_NEUCR 60S ribosomal protein L11 OS=Neurospora crassa
           GN=rpl-11 PE=3 SV=2
          Length = 174

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
 Frame = +3

Query: 123 GLKIRAYALELAN-----GVGVGVSRNIA-----EQGGAMYALWSYMRPAKPRICGGERW 272
           GLK++ Y L   N       G G+S +I      + G  +Y +  Y    +P    GER 
Sbjct: 85  GLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRP----GERV 140

Query: 273 ESKRRQEQAVGRCCRISGGQPFEGFKLKW 359
             +RR +  VG   RI+     + FK ++
Sbjct: 141 SRRRRAKSRVGATHRITRDDTVKWFKSRF 169


>sp|A4T0N2|OXAA_POLSQ Membrane protein oxaA OS=Polynucleobacter sp.
           (strain QLW-P1DMWA-1) GN=oxaA PE=3 SV=1
          Length = 557

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
 Frame = -3

Query: 361 RHFNLNPSKGCPPLILQHLPTACSCLLLLSHRSPPHMRGFAGLIYDHKA------YIAPP 200
           R   +NP  GC P+++Q +P   S   +L   S   MRG   +++ H        YI P 
Sbjct: 430 RKEKINPLGGCLPVVIQ-IPVFISLYWVL--LSSVEMRGAPWILWIHDLSVPDPYYILPV 486

Query: 199 CSAIFRLTPT---PTPFASSSAYARIFRPII 116
             A+     T   PTP     A   ++ PI+
Sbjct: 487 VMAVSMFVQTKLNPTPPDPVQAKVMMYMPIV 517


>sp|Q5QJC3|DCR1B_CHICK DNA cross-link repair 1B protein OS=Gallus
           gallus GN=DCLRE1B PE=2 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 106 YNLPHPCEPRTVRHLHSQIPIPTAYSRPTHV 14
           ++ P  C P T R LH ++ +PT + RP  V
Sbjct: 44  WSRPLYCSPLTARLLHHRLKVPTRWIRPLEV 74


>sp|Q6WN34|CRDL2_HUMAN Chordin-like protein 2 OS=Homo sapiens
           GN=CHRDL2 PE=1 SV=1
          Length = 429

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 400 HVTCFSVHSPSI--PRHFNLNPSKGCPPLILQHLPTACSCLLLLSHRSPPHMRGFAGLIY 227
           HV+C+ +H P +  P+     P + CP  +  H P+          R+PP      G +Y
Sbjct: 68  HVSCYRLHCPPVHCPQPVT-EPQQCCPKCVEPHTPSGL--------RAPPKSCQHNGTMY 118

Query: 226 DH 221
            H
Sbjct: 119 QH 120
tr_hit_id Q4RVE0
Definition tr|Q4RVE0|Q4RVE0_TETNG Chromosome 15 SCAF14992, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 132
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914678|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_F10.
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4RVE0|Q4RVE0_TETNG Chromosome 15 SCAF14992, whole genome sho...    39   0.17 
tr|A9AI12|A9AI12_BURM1 Amino acid adenylation domain protein (D-...    37   0.64 
tr|Q4IUJ2|Q4IUJ2_AZOVI Usp domain OS=Azotobacter vinelandii DJ G...    35   1.4  
tr|B5ERL6|B5ERL6_ACIF5 Phospholipid-binding protein-like protein...    34   4.2  
tr|B7JBF8|B7JBF8_THIFE Putative uncharacterized protein OS=Acidi...    34   4.2  
tr|B6QHH6|B6QHH6_PENMA 60S ribosomal protein L11 OS=Penicillium ...    33   5.4  
tr|A6R3M3|A6R3M3_AJECN 60S ribosomal protein L11-1 OS=Ajellomyce...    33   5.4  
tr|A8JDT3|A8JDT3_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   7.1  
tr|A7SN60|A7SN60_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   7.1  
tr|B8MK82|B8MK82_9EURO 60S ribosomal protein L11 OS=Talaromyces ...    33   7.1  
tr|Q2JFK3|Q2JFK3_FRASC Pyruvate flavodoxin/ferredoxin oxidoreduc...    33   9.2  
tr|Q5DEM4|Q5DEM4_SCHJA SJCHGC04962 protein OS=Schistosoma japoni...    33   9.2  
tr|Q0UK66|Q0UK66_PHANO Putative uncharacterized protein OS=Phaeo...    33   9.2  

>tr|Q4RVE0|Q4RVE0_TETNG Chromosome 15 SCAF14992, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00028377001 PE=4 SV=1
          Length = 422

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
 Frame = -3

Query: 388 FSVHSPSIPRHFNLNPSKGCPPLILQHLPTACSCLLLLSHRSPPHMRGFAG-----LIYD 224
           F +H   + +HF ++P    PP+ L H+P  C   +   HR PP +   A      +I +
Sbjct: 120 FLLHGADV-QHFAMDPGPAGPPVPLSHIPHTCGYNV---HRQPPSLVMTAPYNDCFMIQE 175

Query: 223 HKAYIAP------------PCSAIFRLTPTPTPFASSSAYARIFRPIICLRYNLPHPCEP 80
              Y+ P            P  ++ ++TP PT   S     + F P       +P P   
Sbjct: 176 GAYYVLPMRWHDTQFSLWCPMHSVSQVTPPPT--LSPPQLPQYFLPPWFYPPGVPPPAHK 233

Query: 79  RTVRH-LHSQIP 47
             + H +H Q+P
Sbjct: 234 PYIPHGMHPQVP 245


>tr|A9AI12|A9AI12_BURM1 Amino acid adenylation domain protein
           (D-alanine-poly(Phosphoribitol) ligase) OS=Burkholderia
           multivorans (strain ATCC 17616 / 249) GN=dltC PE=3 SV=1
          Length = 3219

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = -3

Query: 391 CFSVHSPSIPRHFNLNPSKGCPP-LILQHLPTACSCLLL---LSHRSPPHMRGFAGLIYD 224
           C +VH+ S       + S G P  ++++H P A  C  L   L  R+   +  FA + +D
Sbjct: 150 CVAVHARSAAYMIYTSGSTGTPKAVVVEHGPLAAHCDALAAALPIRADDRLLHFASVNFD 209

Query: 223 --HKAYIAPPCSAIFRLTPTPTPFASSSAYARIFRPII 116
             H+ ++AP           P PFA  +A+A + R  I
Sbjct: 210 AAHECWLAPLALGASVTIAPPQPFAPDAAHALMVRDAI 247


>tr|Q4IUJ2|Q4IUJ2_AZOVI Usp domain OS=Azotobacter vinelandii DJ
           GN=AvinDRAFT_1590 PE=4 SV=1
          Length = 271

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
 Frame = -3

Query: 322 LILQHLPTA-CSCLLLLSHRSPPHMRGFAGLIYDHKAYIAPPCSAIFRLTPTPTPFASSS 146
           LILQ++    C  L+L SH   P  +GFAG + + +   A P  A+  + P  TP+    
Sbjct: 84  LILQYISLGNCDLLVLGSHHRQP-AQGFAGSVQE-RVLQASPVPALIAIDPADTPYE--- 138

Query: 145 AYARIFRPIICLRYNLPHPCEPRTVRHLHSQIPIPTAYSRPTHV 14
                 R +  + ++   PC  R +R     +P P A  R  HV
Sbjct: 139 ------RALAAIDFS---PCASRALRAAWQLLP-PGAQLRALHV 172


>tr|B5ERL6|B5ERL6_ACIF5 Phospholipid-binding protein-like protein
           OS=Acidithiobacillus ferrooxidans (strain ATCC 53993)
           GN=Lferr_2878 PE=4 SV=1
          Length = 183

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -3

Query: 367 IPRHFNLNPSKGCPPLILQHLPT-ACSCLLLLSHRSPPHMRGFAGLIYDHKAYIAPPCSA 191
           I R F        PP+  QHLPT   S +LL+ HR     R    LIYD    + P    
Sbjct: 17  IARRFTQTGDGRTPPIFWQHLPTDTKSLILLMEHREAEPGRKVQWLIYD----LPPAAEG 72

Query: 190 IFRLTPTP 167
           I    P P
Sbjct: 73  IHEDGPLP 80


>tr|B7JBF8|B7JBF8_THIFE Putative uncharacterized protein
           OS=Acidithiobacillus ferrooxidans ATCC 23270 GN=AFE_3280
           PE=4 SV=1
          Length = 183

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -3

Query: 367 IPRHFNLNPSKGCPPLILQHLPT-ACSCLLLLSHRSPPHMRGFAGLIYDHKAYIAPPCSA 191
           I R F        PP+  QHLPT   S +LL+ HR     R    LIYD    + P    
Sbjct: 17  IARRFTQTGDGRTPPIFWQHLPTDTKSLILLMEHREAEPGRKVQWLIYD----LPPAAEG 72

Query: 190 IFRLTPTP 167
           I    P P
Sbjct: 73  IHEDGPLP 80


>tr|B6QHH6|B6QHH6_PENMA 60S ribosomal protein L11 OS=Penicillium
           marneffei ATCC 18224 GN=PMAA_094290 PE=4 SV=1
          Length = 175

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = +3

Query: 123 GLKIRAYALELAN-----GVGVGVSRNIA-----EQGGAMYALWSYMRPAKPRICGGERW 272
           GLK++ Y L   N       G G+S +I      + G  +Y +  Y    +P    GER 
Sbjct: 86  GLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRP----GERI 141

Query: 273 ESKRRQEQAVGRCCRISGGQPFEGFKLKWRGML 371
             +RR +  +G   +I+ G+  + FK ++ G++
Sbjct: 142 AKRRRAKAHIGSNHKITQGETIKWFKNRFEGIV 174


>tr|A6R3M3|A6R3M3_AJECN 60S ribosomal protein L11-1 OS=Ajellomyces
           capsulata (strain NAm1 / WU24) GN=HCAG_04231 PE=3 SV=1
          Length = 212

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
 Frame = +3

Query: 123 GLKIRAYALELAN-----GVGVGVSRNIA-----EQGGAMYALWSYMRPAKPRICGGERW 272
           GLK++ Y L+  N       G G+S +I      + G  +Y +  Y   ++P    GER 
Sbjct: 84  GLKVKEYELKKQNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMSRP----GERV 139

Query: 273 ESKRRQEQAVGRCCRISGGQPFEGFKLKWRGM 368
             +RR +  +G   RI+  +  + FK  ++G+
Sbjct: 140 AKRRRCKSKIGASHRINQAETIKWFKTPFQGI 171


>tr|A8JDT3|A8JDT3_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_178848 PE=4
           SV=1
          Length = 3671

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
 Frame = +2

Query: 197 AGWGYV----------CLVVIYETCKATHMWW*AVGKQEEARASSRQVLQNKWWAAL*RI 346
           AGWG +           L  +++  +  HM     G+    R S R   Q  WWAAL R+
Sbjct: 74  AGWGLMTAGHWQPLWRALASLWQQWRRWHM---LAGRDSGGRISIRVYSQRVWWAALGRV 130

Query: 347 QIEVARYAW 373
           Q      AW
Sbjct: 131 QRTAPALAW 139


>tr|A7SN60|A7SN60_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g124540 PE=4 SV=1
          Length = 83

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = -3

Query: 388 FSVHSPSIPRHFNLNPSKGCPPLILQHLPTACSCLLLLSHRSPPHMRGFAGLIYDHKAYI 209
           F++  P  P H + N +   P L+L+H PT     LLL H S P +    G        +
Sbjct: 1   FTIFMPPPPPHHHKNGTPSPPFLLLRHTPTP---FLLLGHTSTPFL--LLGHTPTPFLLL 55

Query: 208 APPCSAIFRLTPTPTPF 158
               +    L  TPTPF
Sbjct: 56  GHTSTPFLLLGHTPTPF 72


>tr|B8MK82|B8MK82_9EURO 60S ribosomal protein L11 OS=Talaromyces
           stipitatus ATCC 10500 GN=TSTA_046890 PE=4 SV=1
          Length = 175

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
 Frame = +3

Query: 123 GLKIRAYALELAN-----GVGVGVSRNIA-----EQGGAMYALWSYMRPAKPRICGGERW 272
           GLK++ Y L   N       G G+S +I      + G  +Y +  Y    +P    GER 
Sbjct: 86  GLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRP----GERI 141

Query: 273 ESKRRQEQAVGRCCRISGGQPFEGFKLKWRGML 371
             +RR +  +G   RI+  +  + FK ++ G++
Sbjct: 142 AKRRRAKAHIGSSHRITQAETIKWFKNRFEGIV 174