BP914638
Clone id YMU001_000061_C04
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CACATTAAGCAAGCTGTAGCAAAGATGCTTGCTAAAGGAATCATAGTCCCCTCCCAAAGT
GATTGGGCAGCCGAACCGCATCTGGTAAAGAAAGAGGATGGCTCTTACAGGTTTTGTGTT
GCCTCAACAGGATAACTCAGTACGACGTCTATCCTCTCCCTCACGTCGACGACCTCCTTG
ATCAGCTAGGTTTTTACATCACCCTACCATCCCAGACGAATGGCCTGACAGAGCGACTCA
ACAAAACTATCAAACAAAGAATTTCAACGTATGTGGACCCTCTACACCAAAACTGGGATC
AGATTCTCCCCTATGCAATACATGCTTACAACACCTCAGTCCAAGCATCCACACACATCA
GCCCCTTCAGAGCTCTATATGGCCGTGACCCTCGATTACCTCCAGAGATTCCCATATTTA
AATCCTCTCCAACCAATCAGGACGACATCGACTGGTTCGCCCATCTATCTCGCAGGTACA
TCCTCTCCTCCGAGCCGCAGCTGCACATAATCTCCAAAAAGCACAACGGCAGAAAAAAAC
CTATGATGAACA
■■Homology search results ■■ -
sp_hit_id Q9UR07
Definition sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe
Align length 92
Score (bit) 45.1
E-value 0.0002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914638|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C04.
(552 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 45 2e-04
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 45 2e-04
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 45 2e-04
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 45 2e-04
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 42 5e-04
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 44 5e-04
sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia v... 38 0.029
sp|P08361|POL_MLVCB Pol polyprotein (Fragment) OS=Cas-Br-E murin... 38 0.029
sp|P31795|POL_MLVRK Pol polyprotein (Fragment) OS=Radiation muri... 38 0.037
sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia... 38 0.037
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus ty... 37 0.049
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus typ... 37 0.049
sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia vi... 36 0.11
sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia vi... 36 0.11
sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia vi... 36 0.11
sp|P03359|POL_WMSV Pol polyprotein (Fragment) OS=Woolly monkey s... 35 0.19
sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protei... 35 0.19
sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ... 35 0.32
sp|P03360|POL_AVIRE Pol polyprotein (Fragment) OS=Avian reticulo... 35 0.32
sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus... 34 0.41
sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (... 34 0.54
sp|Q6ZNG9|KRBA2_HUMAN KRAB-A domain-containing protein 2 OS=Homo... 34 0.54
sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogen... 33 0.70
sp|P09809|APOA1_RABIT Apolipoprotein A-I OS=Oryctolagus cuniculu... 33 0.92
sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr... 33 1.2
sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protei... 32 1.6
sp|Q5FAH8|ORN_NEIG1 Oligoribonuclease OS=Neisseria gonorrhoeae (... 31 3.5
sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein ... 31 3.5
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 31 4.6
sp|Q1LTH3|ISPE_BAUCH 4-diphosphocytidyl-2-C-methyl-D-erythritol ... 31 4.6

>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
Length = 1333

Score = 45.1 bits (105), Expect = 2e-04
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +3

Query: 192 FYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQASTHISPFR 371
F + QT+G TER N+T+++ + W + +YN ++ ++T ++PF
Sbjct: 1073 FSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFE 1132

Query: 372 ALYGRDPRLPP-EIPIF--KSSPTNQDDIDWF 458
++ P L P E+P F K+ +Q+ I F
Sbjct: 1133 IVHRYSPALSPLELPSFSDKTDENSQETIQVF 1164


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
Length = 1333

Score = 45.1 bits (105), Expect = 2e-04
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +3

Query: 192 FYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQASTHISPFR 371
F + QT+G TER N+T+++ + W + +YN ++ ++T ++PF
Sbjct: 1073 FSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFE 1132

Query: 372 ALYGRDPRLPP-EIPIF--KSSPTNQDDIDWF 458
++ P L P E+P F K+ +Q+ I F
Sbjct: 1133 IVHRYSPALSPLELPSFSDKTDENSQETIQVF 1164


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
Length = 1333

Score = 45.1 bits (105), Expect = 2e-04
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +3

Query: 192 FYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQASTHISPFR 371
F + QT+G TER N+T+++ + W + +YN ++ ++T ++PF
Sbjct: 1073 FSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFE 1132

Query: 372 ALYGRDPRLPP-EIPIF--KSSPTNQDDIDWF 458
++ P L P E+P F K+ +Q+ I F
Sbjct: 1133 IVHRYSPALSPLELPSFSDKTDENSQETIQVF 1164


>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from
transposon 412 OS=Drosophila melanogaster GN=POL PE=4
SV=1
Length = 1237

Score = 45.1 bits (105), Expect = 2e-04
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3

Query: 213 QTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQASTHISPFRALYGRDP 392
QT G+ ER ++T+ + I +Y+ +WD L Y ++ +NT+ + P+ ++GR
Sbjct: 1061 QTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTS 1120

Query: 393 RLP 401
LP
Sbjct: 1121 NLP 1123



Score = 31.2 bits (69), Expect = 3.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQLG 191
+N+ D +PLP +DD+LDQLG
Sbjct: 379 INKKLLADKFPLPRIDDILDQLG 401


>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
Length = 1547

Score = 34.7 bits (78), Expect(2) = 5e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1

Query: 4 IKQAVAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
I + V K+L IVPS+S ++ LV K+DG++R CV
Sbjct: 612 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCV 650



Score = 28.9 bits (63), Expect(2) = 5e-04
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQLG 191
LN+ T D +PLP +D+LL ++G
Sbjct: 655 LNKATISDPFPLPRIDNLLSRIG 677



Score = 42.4 bits (98), Expect = 0.002
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Frame = +3

Query: 171 DLLDQLGFYITLPS----QTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTS 338
+L +LG T+ S QT+G +ER +T+ + + Y QNW LP YN++
Sbjct: 1248 ELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNST 1307

Query: 339 VQASTHISPFRALYGRDPRLPPEIPIFKSSPTNQDDIDWFAHLSRRYILSSEPQLHI--- 509
+ SPF G P P + + + ++ HL I + E H
Sbjct: 1308 PTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIE 1367

Query: 510 ISKKHNGRKKPMM 548
+ +N R+KP++
Sbjct: 1368 METNNNQRRKPLL 1380


>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
Length = 1498

Score = 34.7 bits (78), Expect(2) = 5e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1

Query: 4 IKQAVAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
I + V K+L IVPS+S ++ LV K+DG++R CV
Sbjct: 638 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCV 676



Score = 28.9 bits (63), Expect(2) = 5e-04
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQLG 191
LN+ T D +PLP +D+LL ++G
Sbjct: 681 LNKATISDPFPLPRIDNLLSRIG 703



Score = 43.9 bits (102), Expect = 5e-04
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Frame = +3

Query: 171 DLLDQLGFYITLPS----QTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTS 338
+L +LG T+ S QT+G +ER +T+ + + YV QNW LP YN++
Sbjct: 1274 ELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNST 1333

Query: 339 VQASTHISPFRALYGRDPRLPPEIPIFKSSPTNQDDIDWFAHLSRRYILSSEPQLHI--- 509
+ SPF G P P + + + ++ HL I + E H
Sbjct: 1334 PTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIE 1393

Query: 510 ISKKHNGRKKPMM 548
+ +N R+KP++
Sbjct: 1394 METNNNQRRKPLL 1406


>sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia virus
GN=pol PE=1 SV=2
Length = 1199

Score = 38.1 bits (87), Expect = 0.029
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Frame = +3

Query: 213 QTNGLTERLNKTIKQRISTY-VDPLHQNWDQILPYAIH-AYNTSVQASTHISPFRALYGR 386
Q++G ER+N+TIK+ ++ + ++W +LP A++ A NT ++P+ LYG
Sbjct: 1005 QSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT--PGPHGLTPYEILYGA 1062

Query: 387 DPRL----PPEIPIFKSSPTNQDDIDWFAHLSRRYILSSE 494
P L P++ +SP+ Q AHL Y++ E
Sbjct: 1063 PPPLVNFPDPDMTRVTNSPSLQ------AHLQALYLVQHE 1096


>sp|P08361|POL_MLVCB Pol polyprotein (Fragment) OS=Cas-Br-E murine
leukemia virus GN=pol PE=3 SV=1
Length = 282

Score = 38.1 bits (87), Expect = 0.029
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Frame = +3

Query: 213 QTNGLTERLNKTIKQRISTY-VDPLHQNWDQILPYAIH-AYNTSVQASTHISPFRALYGR 386
Q++G ER+N+TIK+ ++ + ++W +LP A++ A NT ++P+ LYG
Sbjct: 91 QSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT--PGPHGLTPYEILYGA 148

Query: 387 DPRL----PPEIPIFKSSPTNQDDIDWFAHLSRRYILSSE 494
P L P++ +SP+ Q AHL Y++ E
Sbjct: 149 PPPLVNFPDPDMTRVTNSPSLQ------AHLQALYLVQHE 182


>sp|P31795|POL_MLVRK Pol polyprotein (Fragment) OS=Radiation murine
leukemia virus (strain Kaplan) GN=pol PE=3 SV=1
Length = 581

Score = 37.7 bits (86), Expect = 0.037
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Frame = +3

Query: 213 QTNGLTERLNKTIKQRISTY-VDPLHQNWDQILPYAIH-AYNTSVQASTHISPFRALYGR 386
Q++G ER+N+TIK+ ++ + ++W +LP A++ A NT ++P+ LYG
Sbjct: 390 QSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT--PGPHGLTPYEILYGA 447

Query: 387 DPRL----PPEIPIFKSSPTNQ 440
P L PE+ F +SP+ Q
Sbjct: 448 PPPLVNFHDPEMSKFTNSPSLQ 469


>sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia
virus GN=pol PE=3 SV=1
Length = 1196

Score = 37.7 bits (86), Expect = 0.037
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Frame = +3

Query: 213 QTNGLTERLNKTIKQRISTY-VDPLHQNWDQILPYAIH-AYNTSVQASTHISPFRALYGR 386
Q++G ER+N+TIK+ ++ + ++W +LP A++ A NT ++P+ LYG
Sbjct: 1005 QSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT--PGPHGLTPYEILYGA 1062

Query: 387 DPRL----PPEIPIFKSSPTNQ 440
P L PE+ F +SP+ Q
Sbjct: 1063 PPPLVNFHDPEMSKFTNSPSLQ 1084


tr_hit_id Q7F958
Definition tr|Q7F958|Q7F958_ORYSJ OSJNBa0094P09.6 protein OS=Oryza sativa subsp. japonica
Align length 78
Score (bit) 67.0
E-value 6.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914638|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C04.
(552 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7F958|Q7F958_ORYSJ OSJNBa0094P09.6 protein OS=Oryza sativa s... 67 6e-10
tr|Q6MWH2|Q6MWH2_ORYSJ B1160F02.4 protein OS=Oryza sativa subsp.... 66 1e-09
tr|Q8S678|Q8S678_ORYSJ Putative polyprotein (Retrotransposon pro... 65 2e-09
tr|Q53JQ7|Q53JQ7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 65 2e-09
tr|Q25AH6|Q25AH6_ORYSA H0124E07.7 protein OS=Oryza sativa GN=H01... 65 2e-09
tr|Q15F66|Q15F66_9MICR Pol polyprotein OS=Nosema bombycis PE=4 SV=1 65 2e-09
tr|A1YGR9|A1YGR9_9BILA Putative pol protein OS=Philodina roseola... 65 3e-09
tr|Q8UUM8|Q8UUM8_ORYLA LReO_3 protein OS=Oryzias latipes GN=LReO... 65 3e-09
tr|Q7X825|Q7X825_ORYSJ OSJNBa0020J04.1 protein OS=Oryza sativa s... 65 3e-09
tr|Q69MZ1|Q69MZ1_ORYSJ Putative uncharacterized protein OJ1261_A... 65 3e-09
tr|Q60DB4|Q60DB4_ORYSJ Retrotransposon protein, putative, Ty3-gy... 65 3e-09
tr|Q53J67|Q53J67_ORYSJ Retrotransposon protein, putative, Ty3-gy... 65 3e-09
tr|Q10GE4|Q10GE4_ORYSJ Retrotransposon protein, putative, Ty3-gy... 65 3e-09
tr|Q9AYC0|Q9AYC0_ORYSA Polyprotein OS=Oryza sativa GN=OSJNBa0094... 64 4e-09
tr|Q7XXG5|Q7XXG5_ORYSJ OSJNBb0089K24.5 protein OS=Oryza sativa s... 64 4e-09
tr|Q7XNK2|Q7XNK2_ORYSJ OSJNBb0062B06.15 protein OS=Oryza sativa ... 64 4e-09
tr|Q338T9|Q338T9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 64 4e-09
tr|Q01HA7|Q01HA7_ORYSA OSIGBa0139N19-OSIGBa0137L10.8 protein OS=... 64 4e-09
tr|Q9AYB7|Q9AYB7_ORYSA Similar to Sorghum bicolor 22 kDakafirinc... 64 5e-09
tr|Q9AYB6|Q9AYB6_ORYSA Polyprotein OS=Oryza sativa GN=OSJNBa0094... 64 5e-09
tr|Q94I15|Q94I15_ORYSA Putative retroelement OS=Oryza sativa GN=... 64 5e-09
tr|Q94I09|Q94I09_ORYSA Putative retroelement OS=Oryza sativa GN=... 64 5e-09
tr|Q94I07|Q94I07_ORYSA Putative retroelement OS=Oryza sativa GN=... 64 5e-09
tr|Q94I04|Q94I04_ORYSA Putative retroelement OS=Oryza sativa GN=... 64 5e-09
tr|Q8W2R1|Q8W2R1_ORYSA Putative polyprotein OS=Oryza sativa GN=O... 64 5e-09
tr|Q8SB51|Q8SB51_ORYSJ Putative polyprotein (Retrotransposon pro... 64 5e-09
tr|Q8S6W7|Q8S6W7_ORYSA Putative retroelement OS=Oryza sativa GN=... 64 5e-09
tr|Q8S5L6|Q8S5L6_ORYSJ Putative retroelement (Retrotransposon pr... 64 5e-09
tr|Q8LSS7|Q8LSS7_ORYSJ Putative polyprotein (Retrotransposon pro... 64 5e-09
tr|Q8LSR8|Q8LSR8_ORYSJ Putative polyprotein OS=Oryza sativa subs... 64 5e-09

>tr|Q7F958|Q7F958_ORYSJ OSJNBa0094P09.6 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0094P09.6 PE=4 SV=1
Length = 1803

Score = 67.0 bits (162), Expect = 6e-10
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = +3

Query: 168 DDLLDQLGFYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQA 347
++L +L F P QT+G TERLN+ ++ + V + WD+ LPYA +YN S QA
Sbjct: 1524 EELGTRLNFSTAYPPQTDGQTERLNQILEDMLRACVLDFGKTWDKNLPYAEFSYNNSYQA 1583

Query: 348 STHISPFRALYGRDPRLP 401
S ++P+ ALYGR R P
Sbjct: 1584 SIQMAPYEALYGRKCRTP 1601



Score = 32.7 bits (73), Expect(2) = 0.002
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1

Query: 4 IKQAVAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
+K+ + ++ KG I PS S W A V+K+D + R CV
Sbjct: 882 VKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCV 920



Score = 32.0 bits (71), Expect(2) = 0.002
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQL 188
LN +T + YPLP +DDL DQL
Sbjct: 925 LNEVTIKNKYPLPRIDDLFDQL 946


>tr|Q6MWH2|Q6MWH2_ORYSJ B1160F02.4 protein OS=Oryza sativa subsp.
japonica GN=B1160F02.4 PE=4 SV=1
Length = 1618

Score = 66.2 bits (160), Expect = 1e-09
Identities = 33/78 (42%), Positives = 46/78 (58%)
Frame = +3

Query: 168 DDLLDQLGFYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQA 347
++L QL F QT+G TERLN+ ++ + V + WD+ LPYA +YN S QA
Sbjct: 1339 EELRTQLNFSTAYHPQTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQA 1398

Query: 348 STHISPFRALYGRDPRLP 401
S ++P+ ALYGR R P
Sbjct: 1399 SIQMAPYEALYGRKCRTP 1416



Score = 32.7 bits (73), Expect(2) = 0.003
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1

Query: 4 IKQAVAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
+K+ + ++ KG I PS S W A V+K+D + R CV
Sbjct: 881 VKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCV 919



Score = 32.0 bits (71), Expect(2) = 0.003
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQL 188
LN +T + YPLP +DDL DQL
Sbjct: 924 LNEVTIKNKYPLPRIDDLFDQL 945


>tr|Q8S678|Q8S678_ORYSJ Putative polyprotein (Retrotransposon protein,
putative, Ty3-gypsy subclass) OS=Oryza sativa subsp.
japonica GN=OSJNBa0034B05.15 PE=4 SV=1
Length = 1859

Score = 65.5 bits (158), Expect = 2e-09
Identities = 33/78 (42%), Positives = 46/78 (58%)
Frame = +3

Query: 168 DDLLDQLGFYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQA 347
++L +L F QT+G TERLN+ +K + V + WD+ LPYA +YN S QA
Sbjct: 1580 EELGTRLNFSTAYHPQTDGQTERLNQILKDMLRACVLDFGKTWDKSLPYAEFSYNNSYQA 1639

Query: 348 STHISPFRALYGRDPRLP 401
S ++P+ ALYGR R P
Sbjct: 1640 SIQMAPYEALYGRKCRTP 1657



Score = 32.7 bits (73), Expect(2) = 0.002
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1

Query: 4 IKQAVAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
+K+ + ++ KG I PS S W A V+K+D + R CV
Sbjct: 997 VKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCV 1035



Score = 32.0 bits (71), Expect(2) = 0.002
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQL 188
LN +T + YPLP +DDL DQL
Sbjct: 1040 LNEVTIKNKYPLPRIDDLFDQL 1061


>tr|Q53JQ7|Q53JQ7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g26670 PE=4 SV=1
Length = 1567

Score = 65.5 bits (158), Expect = 2e-09
Identities = 33/78 (42%), Positives = 46/78 (58%)
Frame = +3

Query: 168 DDLLDQLGFYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQA 347
++L QL F QT+G TERLN+ ++ + V + WD+ LPYA +YN S QA
Sbjct: 1474 EELGTQLNFSTAYHPQTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQA 1533

Query: 348 STHISPFRALYGRDPRLP 401
S ++P+ ALYGR R P
Sbjct: 1534 SIQMAPYEALYGRKCRTP 1551


>tr|Q25AH6|Q25AH6_ORYSA H0124E07.7 protein OS=Oryza sativa
GN=H0124E07.7 PE=4 SV=1
Length = 1430

Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/110 (32%), Positives = 61/110 (55%)
Frame = +3

Query: 72 RTASGKERGWLLQVLCCLNRITQYDVYPLPHVDDLLDQLGFYITLPSQTNGLTERLNKTI 251
RT+SG + W++ ++R+T+ + +++ +L F QT+G TER+N+ +
Sbjct: 1124 RTSSGHDSIWVI-----VDRLTKVAHFIPKLQEEMGSKLNFSTAYHPQTDGQTERVNQIL 1178

Query: 252 KQRISTYVDPLHQNWDQILPYAIHAYNTSVQASTHISPFRALYGRDPRLP 401
+ + +WD+ LPYA +YN S QAS ++P+ ALYGR R P
Sbjct: 1179 EDMLRVCALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTP 1228



Score = 35.4 bits (80), Expect(2) = 7e-04
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1

Query: 4 IKQAVAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
+K+ V +L KG I PS S W A V+K+D + R CV
Sbjct: 551 VKRQVDDLLQKGYIRPSSSPWRAPVIFVEKKDHTQRMCV 589



Score = 31.2 bits (69), Expect(2) = 7e-04
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQL 188
LN +T + YPLP +DDL DQL
Sbjct: 594 LNDVTIKNKYPLPRIDDLFDQL 615


>tr|Q15F66|Q15F66_9MICR Pol polyprotein OS=Nosema bombycis PE=4 SV=1
Length = 1270

Score = 65.1 bits (157), Expect = 2e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +3

Query: 213 QTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQASTHISPFRALYGRDP 392
Q+NGL ER N+T+ +++S + QNWD++LPY + Y S+ + SPF LYGR P
Sbjct: 1052 QSNGLAERTNRTVVEKMSKAMTEYSQNWDKVLPYVLMQYRVSIIERFNASPFMLLYGRTP 1111

Query: 393 RLP 401
++P
Sbjct: 1112 QIP 1114


>tr|A1YGR9|A1YGR9_9BILA Putative pol protein OS=Philodina roseola PE=4
SV=1
Length = 1269

Score = 64.7 bits (156), Expect(2) = 3e-09
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Frame = +3

Query: 213 QTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQASTHISPFRALYGRDP 392
QTNG+ R N T +IS D + NWD+ L + AYN+ V +T+ SP+ LYGR P
Sbjct: 1092 QTNGIVGRFNSTFIPQISKLQDSENNNWDEYLQAVVFAYNSGVHKTTNYSPYELLYGRPP 1151

Query: 393 RLPPEIPIFKSSPTN---QDDIDWFAHLSRRY-ILSSEPQLHIISKK 521
RLP F S P++ + D+F L + I + + +II ++
Sbjct: 1152 RLP-----FYSKPSHFSFRQPNDYFEQLRKTLKIYNQSARFNIIQQQ 1193



Score = 20.4 bits (41), Expect(2) = 3e-09
Identities = 5/9 (55%), Positives = 9/9 (100%)
Frame = +1

Query: 190 VFTSPYHPR 216
+F++PYHP+
Sbjct: 1084 IFSTPYHPQ 1092



Score = 35.8 bits (81), Expect = 1.6
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1

Query: 16 VAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
+ + L+ G++ S S +AA LVKK DG+YRF V
Sbjct: 373 IQEFLSAGLMTESHSPYAAPAFLVKKHDGTYRFVV 407


>tr|Q8UUM8|Q8UUM8_ORYLA LReO_3 protein OS=Oryzias latipes GN=LReO_3
PE=4 SV=1
Length = 1498

Score = 64.7 bits (156), Expect = 3e-09
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3

Query: 213 QTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQASTHISPFRALYGRDP 392
QT+GL ER N+T+K + +V +WDQ LPY + AY QAST SPF LYGR
Sbjct: 816 QTDGLVERFNQTLKTMLRKFVSETGADWDQWLPYLLFAYREVPQASTGFSPFELLYGRQV 875

Query: 393 RLPPEI--PIFKSSPTNQDDI 449
R P ++ ++ T++D++
Sbjct: 876 RGPLDLLKDYWEKPVTDKDNV 896



Score = 40.4 bits (93), Expect(2) = 2e-05
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1

Query: 4 IKQAVAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
+++ + ML G+I PS S+W + LV K+DGS RFC+
Sbjct: 1095 LEKEIELMLKLGVIEPSTSEWCSPVVLVPKKDGSLRFCI 1133



Score = 31.2 bits (69), Expect(2) = 2e-05
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQLG--FYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNW 296
LN +++ YP+P +D+LL+++G +IT + G + + ++ + P +
Sbjct: 1138 LNAVSKIQSYPMPRIDELLERVGKSKFITTLDLSKGYWQVALAQETKELTAFTTPYGKFQ 1197

Query: 297 DQILPYAIHAYNTSVQASTHISPFRALYGRDPRLPPEI----PIFKSSPTNQDDIDWFAH 464
+++P+ + + Q RL EI P F ++ DD+ F+H
Sbjct: 1198 FKVMPFGLQGAPATFQ----------------RLMDEILRDFPQFAAA--YLDDVIIFSH 1239

Query: 465 LSRRYILSSEPQLHII 512
R ++ LH+I
Sbjct: 1240 SWRDHMSHLRHVLHLI 1255


>tr|Q7X825|Q7X825_ORYSJ OSJNBa0020J04.1 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0020J04.1 PE=4 SV=2
Length = 1763

Score = 64.7 bits (156), Expect = 3e-09
Identities = 32/78 (41%), Positives = 46/78 (58%)
Frame = +3

Query: 168 DDLLDQLGFYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQA 347
++L +L F QT+G TERLN+ ++ + V + WD+ LPYA +YN S QA
Sbjct: 1510 EELRTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQA 1569

Query: 348 STHISPFRALYGRDPRLP 401
S ++P+ ALYGR R P
Sbjct: 1570 SIQMAPYEALYGRKCRTP 1587


>tr|Q69MZ1|Q69MZ1_ORYSJ Putative uncharacterized protein OJ1261_A08.33
OS=Oryza sativa subsp. japonica GN=OJ1261_A08.33 PE=4
SV=1
Length = 1620

Score = 64.7 bits (156), Expect = 3e-09
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +3

Query: 168 DDLLDQLGFYITLPSQTNGLTERLNKTIKQRISTYVDPLHQNWDQILPYAIHAYNTSVQA 347
++L +L F QT+G TERLN+ ++ + V + WD+ LPYA +YN S QA
Sbjct: 1341 EELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQA 1400

Query: 348 STHISPFRALYGRDPRLP 401
S ++P++ALYGR R P
Sbjct: 1401 SIQMAPYKALYGRKCRTP 1418



Score = 32.7 bits (73), Expect(2) = 0.003
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1

Query: 4 IKQAVAKMLAKGIIVPSQSDWAAEPHLVKKEDGSYRFCV 120
+K+ + ++ KG I PS S W A V+K+D + R CV
Sbjct: 706 VKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCV 744



Score = 32.0 bits (71), Expect(2) = 0.003
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3

Query: 123 LNRITQYDVYPLPHVDDLLDQL 188
LN +T + YPLP +DDL DQL
Sbjct: 749 LNEVTIKNKYPLPRIDDLFDQL 770