BP914564
Clone id YMU001_000060_D03
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TGCAAGGTGATCTTTAGAGCAAAATGGCCACCACATGCGCCTTCATGATTCTCTTCCAAC
ACTCTGTAAAGCTCCTCCCGCCAAGGTACACGTCTCAACACGAGATCAGCCCCTTTCATG
TATAAGACATCACCAATCAATTTGTACCTGTATGCTCTACGCACAAAGCCATACTTCTTA
GACTTCTGAATCTCCTTTGGAATGATTCCTATTAGCAAAAAATCCTCTGGACTGACTACA
ACTGGACTCACCCATTCGTGTGGTCTCCACAGGGACTATGAACCCTGCCTTCAATAACTT
GTCAACCTCTTCTCGCAAGGCTTCCATTTGATCTTGACCCATCCTTCTTAGCCTTTGCCG
CACTGGTTTAGCACCTTCTTTCAGCTCTATATGCATCTCTTCCCCCTTGAACCCTCTGAT
CTCTTCATATGAAGTAATGAACAAATCAGGAAAACTAGCCAGCATTTGCAAATATATCTC
CTTCTCCATAGTTGAGAGGTCTCCACTGATGAGTACCTGCAGGTAATATCTCAAGGGCGA
ATTCGCG
■■Homology search results ■■ -
sp_hit_id P21414
Definition sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus
Align length 76
Score (bit) 34.7
E-value 0.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914564|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_D03.
(532 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ... 35 0.30
sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1... 32 1.5
sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr... 32 1.5
sp|P0C0Z7|CH60_CHLTR 60 kDa chaperonin OS=Chlamydia trachomatis ... 32 1.9
sp|Q3KMQ9|CH60_CHLTA 60 kDa chaperonin OS=Chlamydia trachomatis ... 32 1.9
sp|Q255A1|CH60_CHLFF 60 kDa chaperonin OS=Chlamydophila felis (s... 32 1.9
sp|P15599|CH601_CHLCV 60 kDa chaperonin 1 OS=Chlamydophila cavia... 32 1.9
sp|P0A4P2|TRMD_STRLI tRNA (guanine-N(1)-)-methyltransferase OS=S... 32 2.5
sp|P0A4P1|TRMD_STRCO tRNA (guanine-N(1)-)-methyltransferase OS=S... 32 2.5
sp|Q4VC17|ATS18_MOUSE A disintegrin and metalloproteinase with t... 32 2.5
sp|P31681|CH60_CHLPN 60 kDa chaperonin OS=Chlamydia pneumoniae G... 31 3.3
sp|Q59322|CH60_CHLMU 60 kDa chaperonin OS=Chlamydia muridarum GN... 31 3.3
sp|P48673|VIMB_CARAU Vimentin beta OS=Carassius auratus PE=2 SV=1 30 5.6
sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 O... 30 7.3
sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 O... 30 7.3
sp|Q9UYX4|RIFK_PYRAB Riboflavin kinase OS=Pyrococcus abyssi GN=r... 30 7.3

>sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus
GN=pol PE=3 SV=1
Length = 1165

Score = 34.7 bits (78), Expect = 0.30
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -2

Query: 486 EKEIYLQMLASFPDLFITSYEEIRGF----KGEEMHIELKEGAKPVRQRLRRMGQDQMEA 319
EK + + S+ LF T + E G + + +EL+ GA PV R M ++ E
Sbjct: 131 EKPVPSSIDPSWLQLFPTVWAERAGMGLANQVPPVVVELRSGASPVAVRQYPMSKEAREG 190

Query: 318 LREEVDKLLKAGFIVP 271
+R + K L G +VP
Sbjct: 191 IRPHIQKFLDLGVLVP 206


>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1
OS=Caenorhabditis elegans GN=ama-1 PE=1 SV=2
Length = 1852

Score = 32.3 bits (72), Expect = 1.5
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = -2

Query: 489 MEKEIYLQMLASFPDLFITSYEEIRGFKGEEMH-IELKEGAKPVRQRLRRMGQDQMEALR 313
++K++ ++M+A + I G G ++H I + A+ + RLR G+D+ EA
Sbjct: 1212 VDKKLTMEMIA----------DRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQE 1261

Query: 312 EEVDKLLKAGFIVPVETTRMGE 247
E+VDK+ F+ +E + +
Sbjct: 1262 EQVDKMEDDVFLRCIEANMLSD 1283


>sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus
GN=pro-pol PE=3 SV=1
Length = 1127

Score = 32.3 bits (72), Expect = 1.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2

Query: 390 IELKEGAKPVRQRLRRMGQDQMEALREEVDKLLKAGFIVPVET 262
+ELK A PV R M ++ E +R + + L G +VP ++
Sbjct: 129 VELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPCQS 171


>sp|P0C0Z7|CH60_CHLTR 60 kDa chaperonin OS=Chlamydia trachomatis
GN=groL PE=1 SV=2
Length = 544

Score = 32.0 bits (71), Expect = 1.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2

Query: 381 KEGAKPVRQRLRRMGQDQMEALREEVDKLLKAGFIVPVETTRMGESSCSQSRG 223
KEGA +Q + R + +ALR+ +L+AG + P + TR S + G
Sbjct: 462 KEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAG 514


>sp|Q3KMQ9|CH60_CHLTA 60 kDa chaperonin OS=Chlamydia trachomatis
(strain A/HAR-13 / ATCC VR-571B) GN=groL PE=2 SV=3
Length = 544

Score = 32.0 bits (71), Expect = 1.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2

Query: 381 KEGAKPVRQRLRRMGQDQMEALREEVDKLLKAGFIVPVETTRMGESSCSQSRG 223
KEGA +Q + R + +ALR+ +L+AG + P + TR S + G
Sbjct: 462 KEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAG 514


>sp|Q255A1|CH60_CHLFF 60 kDa chaperonin OS=Chlamydophila felis
(strain Fe/C-56) GN=groL PE=3 SV=1
Length = 544

Score = 32.0 bits (71), Expect = 1.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2

Query: 381 KEGAKPVRQRLRRMGQDQMEALREEVDKLLKAGFIVPVETTRMGESSCSQSRG 223
KEGA +Q L R + +ALR+ +++AG + P + TR S + G
Sbjct: 462 KEGAIICQQVLARSSNEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAG 514


>sp|P15599|CH601_CHLCV 60 kDa chaperonin 1 OS=Chlamydophila caviae
GN=groL1 PE=2 SV=1
Length = 544

Score = 32.0 bits (71), Expect = 1.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2

Query: 381 KEGAKPVRQRLRRMGQDQMEALREEVDKLLKAGFIVPVETTRMGESSCSQSRG 223
KEGA +Q L R + +ALR+ +++AG + P + TR S + G
Sbjct: 462 KEGAIICQQVLSRSSSEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAG 514


>sp|P0A4P2|TRMD_STRLI tRNA (guanine-N(1)-)-methyltransferase
OS=Streptomyces lividans GN=trmD PE=3 SV=1
Length = 277

Score = 31.6 bits (70), Expect = 2.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3

Query: 149 RYKLIGDVLYMKGADLVLRRVPWREELYRVLEENHEGACG 30
R+ + D Y G +V++ PW + L VL + +E CG
Sbjct: 44 RHNTVDDTPYGGGPGMVMKTEPWGDALDSVLADGYETGCG 83


>sp|P0A4P1|TRMD_STRCO tRNA (guanine-N(1)-)-methyltransferase
OS=Streptomyces coelicolor GN=trmD PE=3 SV=1
Length = 277

Score = 31.6 bits (70), Expect = 2.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3

Query: 149 RYKLIGDVLYMKGADLVLRRVPWREELYRVLEENHEGACG 30
R+ + D Y G +V++ PW + L VL + +E CG
Sbjct: 44 RHNTVDDTPYGGGPGMVMKTEPWGDALDSVLADGYETGCG 83


>sp|Q4VC17|ATS18_MOUSE A disintegrin and metalloproteinase with
thrombospondin motifs 18 OS=Mus musculus GN=Adamts18
PE=2 SV=1
Length = 1219

Score = 31.6 bits (70), Expect = 2.5
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = -2

Query: 405 GEEMHIELKEGA-KPVRQRLRRMGQDQMEALRE-EVDKLLKAGFIVPVETTRMGESSCSQ 232
G+++H+ELK A R++ +G+D RE EV + L GFI ++ + S+C+
Sbjct: 105 GQDLHLELKPSAILSSHFRVQVLGKDGASETREPEVPQCLYQGFIRNDSSSSVAVSTCAG 164

Query: 231 SRGFFANRNH 202
G R++
Sbjct: 165 LSGLIRTRDN 174


tr_hit_id Q7FAH7
Definition tr|Q7FAH7|Q7FAH7_ORYSJ OSJNBa0073L13.2 protein OS=Oryza sativa subsp. japonica
Align length 86
Score (bit) 59.7
E-value 9.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914564|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_D03.
(532 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7FAH7|Q7FAH7_ORYSJ OSJNBa0073L13.2 protein OS=Oryza sativa s... 60 9e-08
tr|Q2AA19|Q2AA19_ASPOF RNase H family protein OS=Asparagus offic... 58 3e-07
tr|A5C1W7|A5C1W7_VITVI Putative uncharacterized protein OS=Vitis... 57 5e-07
tr|Q7X8F3|Q7X8F3_ORYSJ OSJNBa0093P23.5 protein (OSJNBa0041M21.10... 57 6e-07
tr|Q2QWC7|Q2QWC7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 57 6e-07
tr|Q01LU7|Q01LU7_ORYSA OSIGBa0136B09.4 protein OS=Oryza sativa G... 57 6e-07
tr|Q2R431|Q2R431_ORYSJ Retrotransposon protein, putative, Ty3-gy... 57 8e-07
tr|Q2QQK9|Q2QQK9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 57 8e-07
tr|Q7F9R8|Q7F9R8_ORYSJ OSJNBb0054B09.2 protein OS=Oryza sativa s... 56 1e-06
tr|Q01M11|Q01M11_ORYSA OSIGBa0148D14.10 protein (OSIGBa0130O15.3... 56 1e-06
tr|A5BSJ3|A5BSJ3_VITVI Putative uncharacterized protein OS=Vitis... 56 1e-06
tr|A5BSV0|A5BSV0_VITVI Putative uncharacterized protein OS=Vitis... 56 1e-06
tr|A5BRI1|A5BRI1_VITVI Putative uncharacterized protein (Fragmen... 56 1e-06
tr|Q7XWN8|Q7XWN8_ORYSJ OSJNBa0032B23.2 protein OS=Oryza sativa s... 55 2e-06
tr|Q7XSE2|Q7XSE2_ORYSJ OSJNBb0033G08.12 protein OS=Oryza sativa ... 55 2e-06
tr|Q65XK8|Q65XK8_ORYSJ Putative polyprotein OS=Oryza sativa subs... 55 2e-06
tr|Q2R4J7|Q2R4J7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 55 2e-06
tr|Q2QMY4|Q2QMY4_ORYSJ Retrotransposon protein, putative, Ty3-gy... 55 2e-06
tr|Q2AA00|Q2AA00_ASPOF Reverse transcriptase family protein OS=A... 55 2e-06
tr|A5C6U7|A5C6U7_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06
tr|A5BHA9|A5BHA9_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06
tr|A5B120|A5B120_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06
tr|A5AZ81|A5AZ81_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06
tr|Q9FRN0|Q9FRN0_ORYSA Putative gypsy-type retrotransposon GAG-P... 55 2e-06
tr|Q7XXG9|Q7XXG9_ORYSJ OSJNBb0016B03.14 protein OS=Oryza sativa ... 55 2e-06
tr|Q7FA52|Q7FA52_ORYSJ OSJNBa0018J19.4 protein OS=Oryza sativa s... 55 2e-06
tr|Q2AA16|Q2AA16_ASPOF Gag/pol polyprotein, related OS=Asparagus... 55 2e-06
tr|Q108V1|Q108V1_ORYSJ Retrotransposon protein, putative, Ty3-gy... 55 2e-06
tr|Q01LM3|Q01LM3_ORYSA OSIGBa0104J13.2 protein OS=Oryza sativa G... 55 2e-06
tr|A5B6Y5|A5B6Y5_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06

>tr|Q7FAH7|Q7FAH7_ORYSJ OSJNBa0073L13.2 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0073L13.2 PE=4 SV=1
Length = 943

Score = 59.7 bits (143), Expect = 9e-08
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = -2

Query: 516 VLISGDLSTMEKEIYLQMLASFPDLFITSYEEIRGFKGEEM--HIELKEGAKPVRQRLRR 343
V + GD+ E E L++L D+F S +E+ G + + H+ +K AKP +Q+LR+
Sbjct: 132 VSLGGDMGEREAENILEVLKKNIDIFAWSPDEVGGVSTDLIMHHLAVKPEAKPSKQKLRK 191

Query: 342 MGQDQMEALREEVDKLLKAGFIVPVE 265
M D+ EA + EV KLLKAG I ++
Sbjct: 192 MSADRQEAAKAEVQKLLKAGVIQEID 217



Score = 35.4 bits (80), Expect = 1.8
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = -3

Query: 263 PHEWVSPVVVSPEDFLLIGIIPKEIQKSKKYGFVRRAYRYKLIGDVLYMKGADLVLRRVP 84
P +W +P V +L G +P++ ++K+ RA +YKL+ LY L
Sbjct: 564 PEDWRTPFV----KYLKNGWLPEDEAEAKRLQL--RATKYKLVSSQLYRSRVLQPLLHCI 617

Query: 83 WREELYRVLEENHEGACGGHFALK 12
E + +E H+G CG H A +
Sbjct: 618 SFAEAEEMAKEIHQGLCGAHQAAR 641


>tr|Q2AA19|Q2AA19_ASPOF RNase H family protein OS=Asparagus
officinalis GN=20.t00014 PE=4 SV=1
Length = 1189

Score = 57.8 bits (138), Expect = 3e-07
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = -2

Query: 516 VLISGDLSTMEKEIYLQMLASFPDLFITSYEEIRGF--KGEEMHIELKEGAKPVRQRLRR 343
+ I+ DLS+ EKE + ++ + D+F +YE++ G K H+ + AKPV+Q+ RR
Sbjct: 126 IFIAEDLSSSEKEDLISLIREYIDVFAWNYEDMPGLDPKVAMHHLNIDPDAKPVKQQQRR 185

Query: 342 MGQDQMEALREEVDKLLKAGFI 277
+ ME++ EV KL+ +GF+
Sbjct: 186 FRPEIMESIESEVKKLIDSGFV 207



Score = 38.9 bits (89), Expect = 0.16
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = -3

Query: 257 EWVSPVVVSPEDFLLIGIIPKEIQKSKKYGFVRRAYRYKLIGDVLYMKGADLVLRRVPWR 78
+W P + D+ + GI+P + +++ + Y + VLY K D +L R R
Sbjct: 804 DWRFPYI----DYAVYGILPDDPKEAASIKRKALRFYYDAVSQVLYRKSHDGILLRCLSR 859

Query: 77 EELYRVLEENHEGACGGH 24
+E L+E H CG H
Sbjct: 860 KEAKEALKEAHGVKCGAH 877


>tr|A5C1W7|A5C1W7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_002875 PE=4 SV=1
Length = 1391

Score = 57.4 bits (137), Expect = 5e-07
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = -2

Query: 519 QVLISGDLSTMEKEIYLQMLASFPDLFITSYEEIRGFKGE--EMHIELKEGAKPVRQRLR 346
+++I DLST E++ +Q+L S+ D+F SYE++ G + + L A+PV+Q+LR
Sbjct: 533 ELMIGSDLSTDERDSLIQLLRSYLDVFAWSYEDMPGLDPSIVQHRLPLLPQARPVKQKLR 592

Query: 345 RMGQDQMEALREEVDKLLKAGFIVPVE 265
R+ ++EE+ K L GF+ VE
Sbjct: 593 RLHHRWSLQVKEEIQKQLSVGFLSVVE 619


>tr|Q7X8F3|Q7X8F3_ORYSJ OSJNBa0093P23.5 protein (OSJNBa0041M21.10
protein) OS=Oryza sativa subsp. japonica
GN=OSJNBa0093P23.5 PE=4 SV=2
Length = 2074

Score = 57.0 bits (136), Expect = 6e-07
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = -2

Query: 516 VLISGDLSTMEKEIYLQMLASFPDLFITSYEEIRGFKGEEM--HIELKEGAKPVRQRLRR 343
V + GD+ E E L++L D+F S +E+ G + + H+ +K KP +Q+LR+
Sbjct: 1648 VSLGGDMGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQKLRK 1707

Query: 342 MGQDQMEALREEVDKLLKAGFIVPVE 265
M D+ EA + EV KLL+AG I ++
Sbjct: 1708 MSADRQEATKTEVQKLLRAGVIQEID 1733


>tr|Q2QWC7|Q2QWC7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g09800 PE=4 SV=1
Length = 1412

Score = 57.0 bits (136), Expect = 6e-07
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = -2

Query: 516 VLISGDLSTMEKEIYLQMLASFPDLFITSYEEIRGFKGEEM--HIELKEGAKPVRQRLRR 343
VL+ GDL E E L++L D+F +E+ G + + H+ +K A+P +Q+LR+
Sbjct: 439 VLLGGDLGEREAENILKVLKKNIDIFAWGPDEVGGVSTDLIMHHLAVKPDARPRKQKLRK 498

Query: 342 MGQDQMEALREEVDKLLKAGFIVPVE 265
M D EA + EV KL+KAG + ++
Sbjct: 499 MSADLQEAAKAEVQKLIKAGVVREID 524



Score = 37.4 bits (85), Expect = 0.48
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = -3

Query: 263 PHEWVSPVVVSPEDFLLIGIIPKEIQKSKKYGFVRRAYRYKLIGDVLYMKGADLVLRRVP 84
P +W +P + +L G +P++ ++K+ RA RYKL+ LY G L
Sbjct: 1027 PEDWQTPFI----KYLKNGWLPEDEAEAKRLQL--RAARYKLVSGQLYRTGVLQPLLHCI 1080

Query: 83 WREELYRVLEENHEGACGGHFALK 12
E + +E H+G CG H A +
Sbjct: 1081 SFAEGEEMAKEIHKGLCGAHQAAR 1104


>tr|Q01LU7|Q01LU7_ORYSA OSIGBa0136B09.4 protein OS=Oryza sativa
GN=OSIGBa0136B09.4 PE=4 SV=1
Length = 1348

Score = 57.0 bits (136), Expect = 6e-07
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = -2

Query: 516 VLISGDLSTMEKEIYLQMLASFPDLFITSYEEIRGFKGEEM--HIELKEGAKPVRQRLRR 343
V + GD+ E E L++L D+F S +E+ G + + H+ +K KP +Q+LR+
Sbjct: 922 VSLGGDMGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQKLRK 981

Query: 342 MGQDQMEALREEVDKLLKAGFIVPVE 265
M D+ EA + EV KLL+AG I ++
Sbjct: 982 MSADRQEATKTEVQKLLRAGVIQEID 1007


>tr|Q2R431|Q2R431_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g29880 PE=4 SV=1
Length = 1427

Score = 56.6 bits (135), Expect = 8e-07
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = -2

Query: 516 VLISGDLSTMEKEIYLQMLASFPDLFITSYEEIRGFKGEEM--HIELKEGAKPVRQRLRR 343
V + GD+ E E L++L D+F S +E+ G + + H+ +K KP +Q+LR+
Sbjct: 804 VSLGGDMGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPDIKPRKQKLRK 863

Query: 342 MGQDQMEALREEVDKLLKAGFIVPVE 265
M D+ EA + EV KLL+AG I ++
Sbjct: 864 MSADRQEAAKAEVQKLLRAGVIQEID 889


>tr|Q2QQK9|Q2QQK9_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g30680 PE=4 SV=1
Length = 978

Score = 56.6 bits (135), Expect = 8e-07
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = -2

Query: 516 VLISGDLSTMEKEIYLQMLASFPDLFITSYEEIRGFKGEEM--HIELKEGAKPVRQRLRR 343
V + GD+ E E L++L D+F S +E+ G + + H+ +K KP +Q+LR+
Sbjct: 44 VSLGGDIGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPDIKPRKQKLRK 103

Query: 342 MGQDQMEALREEVDKLLKAGFIVPVE 265
M D+ EA + EV KLL+AG I ++
Sbjct: 104 MSADRQEAAKAEVQKLLRAGVIQEID 129


>tr|Q7F9R8|Q7F9R8_ORYSJ OSJNBb0054B09.2 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0054B09.2 PE=4 SV=1
Length = 1992

Score = 56.2 bits (134), Expect = 1e-06
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Frame = -2

Query: 507 SGDLSTMEKEIYLQM-----LASFPDLFITSYEEIRGFKGE--EMHIELKEGAKPVRQRL 349
SG+ K+I+L A+ D+F ++ G E E + +KE AKP++QRL
Sbjct: 947 SGESEAKTKKIHLDSSDPTKTANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 1006

Query: 348 RRMGQDQMEALREEVDKLLKAGFIVPV 268
RR QD+ +A++EE+ KLL AGFI V
Sbjct: 1007 RRFAQDRKDAIKEELTKLLAAGFIKEV 1033



Score = 33.5 bits (75), Expect = 6.9
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = -3

Query: 257 EWVSPVVVSPEDFLLIGIIPKEIQKSKKYGFVRRAYRYKLIGDVLYMKGADLVLRRVPWR 78
+W P++ FL +P++ ++++ RR+ Y + LY K +L+R
Sbjct: 1581 DWREPLI----RFLTSQELPQDKDEAERIS--RRSKLYVMHEAELYKKSPSGILQRCVSL 1634

Query: 77 EELYRVLEENHEGACGGHFALK 12
EE ++L++ H G CG H A +
Sbjct: 1635 EEGRQLLKDIHSGICGNHAAAR 1656


>tr|Q01M11|Q01M11_ORYSA OSIGBa0148D14.10 protein (OSIGBa0130O15.3
protein) OS=Oryza sativa GN=OSIGBa0148D14.10 PE=4 SV=1
Length = 1992

Score = 56.2 bits (134), Expect = 1e-06
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Frame = -2

Query: 507 SGDLSTMEKEIYLQM-----LASFPDLFITSYEEIRGFKGE--EMHIELKEGAKPVRQRL 349
SG+ K+I+L A+ D+F ++ G E E + +KE AKP++QRL
Sbjct: 947 SGESEAKTKKIHLDSSDPTKTANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 1006

Query: 348 RRMGQDQMEALREEVDKLLKAGFIVPV 268
RR QD+ +A++EE+ KLL AGFI V
Sbjct: 1007 RRFAQDRKDAIKEELTKLLAAGFIKEV 1033



Score = 33.5 bits (75), Expect = 6.9
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = -3

Query: 257 EWVSPVVVSPEDFLLIGIIPKEIQKSKKYGFVRRAYRYKLIGDVLYMKGADLVLRRVPWR 78
+W P++ FL +P++ ++++ RR+ Y + LY K +L+R
Sbjct: 1581 DWREPLI----RFLTSQELPQDKDEAERIS--RRSKLYVMHEAELYKKSPSGILQRCVSL 1634

Query: 77 EELYRVLEENHEGACGGHFALK 12
EE ++L++ H G CG H A +
Sbjct: 1635 EEGRQLLKDIHSGICGNHAAAR 1656