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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914519
Clone id YMU001_000059_G09
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCCCAAATGATAATCAATACAATTGGATGTCTGGGTTAAAAACCCTCAAGGATAAACAT
AAAGCTGTGAGGGAAAAGTACCCAGAAGGTAATACAAAAAGATGATAAGGGAAAAGGAAC
TAGGAGAACTAGCTGTCAACCTTGCTGACTGCACAGATTTGCTAGGTCTCTCCTAGCGAT
GCAGCCCCAGAAGCACCCACAACCCCTCAGCGCTCAGAATCCTCTACACACCTGCCTGTA
CCACCAATCAAATCTCCCAAGGAACTCTGAAACCATGATGCTGGCCCTCCAGGATGTCCT
TGAACCAATCTGTAATCAATCTGGATCTAATGCCGAGGAAGGTAGAAGTGGCCCTGGCAT
CCCATCTCTGAAAGGAAGGAGGAAGAACTGTAGAGTCCTCCACCACGGAGACCATAAGAA
TACACCAGAAGGAACCTGACTCTGACCAATACAACTGACCAATGGAACTGTCGAACTAAT
GAGAAAGTAGGCTGTTGGCCAGAATGCCAATGTAGTTCTCTGCCAGGAGAGAAACCTGTT
CAAAGAACCTGTCATAGACTGTCACTAAGTCCCACTCTC
■■Homology search results ■■ -
sp_hit_id Q62245
Definition sp|Q62245|SOS1_MOUSE Son of sevenless homolog 1 OS=Mus musculus
Align length 44
Score (bit) 33.5
E-value 0.79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914519|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_G09.
         (579 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62245|SOS1_MOUSE Son of sevenless homolog 1 OS=Mus musculus ...    33   0.79 
sp|Q07889|SOS1_HUMAN Son of sevenless homolog 1 OS=Homo sapiens ...    33   1.0  
sp|P37177|PT1P_ECOLI Phosphoenolpyruvate-protein phosphotransfer...    31   3.9  
sp|Q914N3|ORF24_TTVV4 Uncharacterized ORF2/4 protein OS=Torque t...    31   5.1  
sp|Q914N2|ORF23_TTVV4 Probable protein VP2 OS=Torque teno virus ...    31   5.1  
sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c OS=Schiz...    30   8.7  
sp|Q5DU25|IQEC2_MOUSE IQ motif and SEC7 domain-containing protei...    30   8.7  
sp|Q5JU85|IQEC2_HUMAN IQ motif and SEC7 domain-containing protei...    30   8.7  

>sp|Q62245|SOS1_MOUSE Son of sevenless homolog 1 OS=Mus musculus
            GN=Sos1 PE=1 SV=2
          Length = 1319

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 169  SPSDAAPEAPTTPQRSESSTHLPVPPIKSPKEL*NHDAGPPGCP 300
            SPS   P  P TP    +  HLP PP+    +L +  AGPP  P
Sbjct: 1238 SPSPFTPPPPQTPSPHGTRRHLPSPPLTQEMDL-HSIAGPPVPP 1280


>sp|Q07889|SOS1_HUMAN Son of sevenless homolog 1 OS=Homo sapiens
            GN=SOS1 PE=1 SV=1
          Length = 1333

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 169  SPSDAAPEAPTTPQRSESSTHLPVPPIKSPKEL*NHDAGPPGCP 300
            SPS   P  P TP    +  HLP PP+    +L +  AGPP  P
Sbjct: 1252 SPSPFTPPPPQTPSPHGTRRHLPSPPLTQEVDL-HSIAGPPVPP 1294


>sp|P37177|PT1P_ECOLI Phosphoenolpyruvate-protein phosphotransferase
           ptsP OS=Escherichia coli (strain K12) GN=ptsP PE=3 SV=2
          Length = 748

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = -3

Query: 577 EWDLVTVYDRFFEQVSLLAENY-------IGILANSLLSH*FDSSIGQLYWSE 440
           EW + TV ++F EQ + L++NY       +  L   LL H  D++ G   W E
Sbjct: 269 EWAVKTVIEKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPE 321


>sp|Q914N3|ORF24_TTVV4 Uncharacterized ORF2/4 protein OS=Torque teno
           virus (isolate Human/Germany/KAV/2001) GN=ORF2/4 PE=4
           SV=2
          Length = 274

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 294 SWRASIMVSEFLGRFDWWYRQVCRGF*ALRGCGCFWGCIAR 172
           SWR     +E  G+   WYR VC+   A  GCG F G + R
Sbjct: 2   SWRPPAHNAE--GQEGLWYRSVCQSHGAFCGCGDFVGHLNR 40


>sp|Q914N2|ORF23_TTVV4 Probable protein VP2 OS=Torque teno virus
           (isolate Human/Germany/KAV/2001) GN=ORF2/3 PE=3 SV=2
          Length = 265

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 294 SWRASIMVSEFLGRFDWWYRQVCRGF*ALRGCGCFWGCIAR 172
           SWR     +E  G+   WYR VC+   A  GCG F G + R
Sbjct: 2   SWRPPAHNAE--GQEGLWYRSVCQSHGAFCGCGDFVGHLNR 40


>sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c
           OS=Schizosaccharomyces pombe GN=SPAPB18E9.04c PE=2 SV=1
          Length = 800

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 169 SPSDAAPEAPTTPQRSESSTHLPVPP 246
           S S + P  PT P  S SST +P+PP
Sbjct: 127 SSSLSTPITPTVPPTSTSSTSIPIPP 152



 Score = 30.0 bits (66), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 169 SPSDAAPEAPTTPQRSESSTHLPVPP 246
           S S + P  PT P  S SST +P+PP
Sbjct: 184 SSSLSTPITPTVPPTSTSSTSIPIPP 209



 Score = 30.0 bits (66), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 169 SPSDAAPEAPTTPQRSESSTHLPVPP 246
           S S + P  PT P  S SST +P+PP
Sbjct: 240 SSSLSTPITPTVPPTSTSSTSIPIPP 265


>sp|Q5DU25|IQEC2_MOUSE IQ motif and SEC7 domain-containing protein 2
            OS=Mus musculus GN=Iqsec2 PE=1 SV=2
          Length = 1478

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 169  SPSDAAPEAPTTPQRSESSTHLPVPPIKSPKEL*NHDAGPPG 294
            SP    P  P  P  S  + H P+PP      L  H +GPPG
Sbjct: 1419 SPIPPHPSYPPLPPPSPHTPHSPLPPTSPHGPL--HASGPPG 1458


>sp|Q5JU85|IQEC2_HUMAN IQ motif and SEC7 domain-containing protein 2
            OS=Homo sapiens GN=IQSEC2 PE=2 SV=1
          Length = 1478

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 169  SPSDAAPEAPTTPQRSESSTHLPVPPIKSPKEL*NHDAGPPG 294
            SP    P  P  P  S  + H P+PP      L  H +GPPG
Sbjct: 1419 SPIPPHPSYPPLPPPSPHTPHSPLPPTSPHGPL--HASGPPG 1458
tr_hit_id Q0HYY9
Definition tr|Q0HYY9|Q0HYY9_SHESR Sensor protein OS=Shewanella sp. (strain MR-7)
Align length 64
Score (bit) 42.0
E-value 0.024
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914519|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_G09.
         (579 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0HYY9|Q0HYY9_SHESR Sensor protein OS=Shewanella sp. (strain ...    42   0.024
tr|Q0HF16|Q0HF16_SHESM Sensor protein OS=Shewanella sp. (strain ...    42   0.024
tr|A0L0W4|A0L0W4_SHESA Sensor protein OS=Shewanella sp. (strain ...    42   0.024
tr|A1S2X7|A1S2X7_SHEAM Sensor protein OS=Shewanella amazonensis ...    38   0.35 
tr|B6VFK8|B6VFK8_BOMOR Pumilio (Fragment) OS=Bombina orientalis ...    37   1.0  
tr|Q07YA9|Q07YA9_SHEFN Sensor protein OS=Shewanella frigidimarin...    35   3.0  
tr|Q6NVE5|Q6NVE5_MOUSE cDNA sequence BC068157 OS=Mus musculus GN...    34   6.8  
tr|Q0GFY0|Q0GFY0_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   8.7  
tr|Q8YND7|Q8YND7_ANASP Alr4629 protein OS=Anabaena sp. (strain P...    33   8.7  
tr|Q2M4G6|Q2M4G6_MOUSE Son of sevenless like-protein 1 (Fragment...    33   8.8  
tr|B2ASN7|B2ASN7_PODAN Predicted CDS Pa_1_24120 OS=Podospora ans...    33   8.8  

>tr|Q0HYY9|Q0HYY9_SHESR Sensor protein OS=Shewanella sp. (strain
           MR-7) GN=Shewmr7_0663 PE=4 SV=1
          Length = 1172

 Score = 42.0 bits (97), Expect = 0.024
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = -3

Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386
           ++R+ +Q + LA   IG+L+  LLS  F +++G LYW   +  G+FW +LM S+V   T+
Sbjct: 399 FERYIDQQNHLAS--IGLLSFVLLSQFFPAAVGALYWRRATTQGAFWGMLMGSLVWLYTL 456

Query: 385 LPPS 374
           L P+
Sbjct: 457 LLPA 460


>tr|Q0HF16|Q0HF16_SHESM Sensor protein OS=Shewanella sp. (strain
           MR-4) GN=Shewmr4_3284 PE=4 SV=1
          Length = 1168

 Score = 42.0 bits (97), Expect = 0.024
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = -3

Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386
           ++R+ +Q + LA   IG+L+  LLS  F +++G LYW   +  G+FW +LM S+V   T+
Sbjct: 395 FERYIDQQNHLAS--IGLLSFVLLSQFFPAAVGALYWRRATTQGAFWGMLMGSLVWLYTL 452

Query: 385 LPPS 374
           L P+
Sbjct: 453 LLPA 456


>tr|A0L0W4|A0L0W4_SHESA Sensor protein OS=Shewanella sp. (strain
           ANA-3) GN=Shewana3_3460 PE=4 SV=1
          Length = 1175

 Score = 42.0 bits (97), Expect = 0.024
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = -3

Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386
           ++R+ +Q + LA   IG+L+  LLS  F +++G LYW   +  G+FW +LM S+V   T+
Sbjct: 399 FERYIDQQNHLAS--IGLLSFVLLSQFFPAAVGALYWRRATTQGAFWGMLMGSLVWLYTL 456

Query: 385 LPPS 374
           L P+
Sbjct: 457 LLPA 460


>tr|A1S2X7|A1S2X7_SHEAM Sensor protein OS=Shewanella amazonensis
           (strain ATCC BAA-1098 / SB2B) GN=Sama_0523 PE=4 SV=1
          Length = 1179

 Score = 38.1 bits (87), Expect = 0.35
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
 Frame = -3

Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386
           ++R+ +Q + LA   IG+L+  LLS    ++IG LYW   +  G+FW +L+ S+V   T+
Sbjct: 407 FERYIDQQNHLAS--IGLLSFVLLSQFAPAAIGALYWRRANTQGAFWGMLLGSLVWLYTL 464

Query: 385 LPPS 374
           L P+
Sbjct: 465 LLPA 468


>tr|B6VFK8|B6VFK8_BOMOR Pumilio (Fragment) OS=Bombina orientalis
           PE=2 SV=1
          Length = 220

 Score = 36.6 bits (83), Expect = 1.0
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = +2

Query: 164 RSLLAMQPQKHPQPLSAQNPLHTCLYHQSNLPRNSETMMLALQDVLEPICNQSGSNAEEG 343
           R L + QPQ  PQP   QN   +  Y  S+L  NS++  L  Q   +P  N  G  +  G
Sbjct: 124 RQLSSQQPQGQPQPQGNQNMASSSFYGNSSLSSNSQSSSLFSQSSGQPANNSLGFGS-SG 182

Query: 344 RSGPGIPSLKG 376
             G  + S  G
Sbjct: 183 SLGATLSSALG 193


>tr|Q07YA9|Q07YA9_SHEFN Sensor protein OS=Shewanella frigidimarina
           (strain NCIMB 400) GN=Sfri_3169 PE=3 SV=1
          Length = 1168

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
 Frame = -3

Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386
           ++RF +Q + LA   IG+L+  LLS    +++G LYW   +  G+F  ++M S+V   T+
Sbjct: 395 FERFIDQQNHLAS--IGLLSFVLLSQFAPAAVGALYWRNATTQGAFVGLIMGSIVWLYTL 452

Query: 385 LPPS 374
           L P+
Sbjct: 453 LLPA 456


>tr|Q6NVE5|Q6NVE5_MOUSE cDNA sequence BC068157 OS=Mus musculus
           GN=BC068157 PE=1 SV=1
          Length = 1067

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
 Frame = +1

Query: 184 APEAPTTPQRSESSTHLPVPPI--------KSPKEL*NHDAGPPGCP 300
           AP  P  P RS SST L  P +         +P+EL  +D+GP GCP
Sbjct: 818 APAPPPPPSRSPSST-LSGPDLAGHSSSATSTPEELRGYDSGPEGCP 863


>tr|Q0GFY0|Q0GFY0_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 87

 Score = 33.5 bits (75), Expect = 8.7
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 236 LYHQSNLPRNSETMMLALQDVLEPICNQSGSNAEEG-RSGPGIPS 367
           +   SN+  NS+T+++ L + +E +C + G+N  +  R GPG PS
Sbjct: 12  IIRSSNMTANSKTIIVHLHEDVEIVCARPGNNTTKNVRIGPGQPS 56


>tr|Q8YND7|Q8YND7_ANASP Alr4629 protein OS=Anabaena sp. (strain PCC
           7120) GN=alr4629 PE=4 SV=1
          Length = 315

 Score = 33.5 bits (75), Expect = 8.7
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +2

Query: 236 LYHQSNLPRNSETMMLALQDVLEPICNQSGSNAEEGRSGPGIPSLKG 376
           L  + N  RNSE   LAL  VL P+  Q      EG S  G+P + G
Sbjct: 258 LQFRKNSSRNSEITALALTQVLPPLLQQQSIAVPEGSSIIGLPLVMG 304


>tr|Q2M4G6|Q2M4G6_MOUSE Son of sevenless like-protein 1 (Fragment)
            OS=Mus musculus GN=Sos1 PE=2 SV=1
          Length = 1174

 Score = 33.5 bits (75), Expect = 8.8
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 169  SPSDAAPEAPTTPQRSESSTHLPVPPIKSPKEL*NHDAGPPGCP 300
            SPS   P  P TP    +  HLP PP+    +L +  AGPP  P
Sbjct: 1093 SPSPFTPPPPQTPSPHGTRRHLPSPPLTQEMDL-HSIAGPPVPP 1135