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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914503
Clone id YMU001_000059_F05
Library
Length 613
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGACACGTCAGCAGTTTGTTGCAAACGTTGTGATGGCTGCCCCTTTGTCAAATCAATAAA
GTCTTCGTTGGCTGTTAAGATACTGGCATTGAAACTGCTTTGTGCTGGTTGGCTGTTTTA
CGTATAAGACAAGCAGTACACAAGTACCCCAATTTTTAAAGCCCCCATTGACCGGCCCAA
CTTGGTTGGCCTCCCCCAAAATTAAAGCCTATGTGAACAACACTCTTATAATTTTTAATC
CCCATGTGACATTAGCCCTTCAATTAAATTTAAGTAGAAACAAAAGCATGAAGACCAGCT
AACGATGTCAATTTCCGGACGCTTCTTCCCGTGCCTCTCCCTCTAGCGCTGGCCTTGTGT
GCTCTCACCGCAAAATGGATACTTTGCAGCCATGGCCTTAGATGTGCCCGTCTCATTTCT
CTCGTATTTAGACGAGATTCCGAACACTGTTCTCCTGGAAAAAATCCCTTGCACCCAAAA
TGATAAGTATTCCCGATTCCCTGACTCCAGAGTTGGAACGCGTTCCGGATGCAGTTTCTG
CTCTCGGAGCACCTATCCTAGAACCTGCTCCTGCACCTATTCAAGCTCCCTTATAGGCGT
AACCATGCCGACT
■■Homology search results ■■ -
sp_hit_id A4W3A5
Definition sp|A4W3A5|RLMN_STRS2 Ribosomal RNA large subunit methyltransferase N OS=Streptococcus suis (strain 98HAH33)
Align length 48
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914503|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_F05.
         (613 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4W3A5|RLMN_STRS2 Ribosomal RNA large subunit methyltransfera...    33   1.2  
sp|Q8S985|ARFO_ORYSJ Auxin response factor 15 OS=Oryza sativa su...    33   1.5  
sp|Q48SK0|RLMN_STRPM Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|A2RDK1|RLMN_STRPG Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q1J5R7|RLMN_STRPF Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q1JG02|RLMN_STRPD Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q1JKX6|RLMN_STRPC Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q1JAS5|RLMN_STRPB Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q8P058|RLMN_STRP8 Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q5XAZ6|RLMN_STRP6 Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q7CEX7|RLMN_STRP3 Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q99YU5|RLMN_STRP1 Ribosomal RNA large subunit methyltransfera...    32   2.6  
sp|Q03J17|RLMN_STRTD Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|Q5M2V3|RLMN_STRT2 Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|Q5LY98|RLMN_STRT1 Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|A3CLL3|RLMN_STRSV Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|B2INF0|RLMN_STRPS Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|Q97RN5|RLMN_STRPN Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|B1IAU3|RLMN_STRPI Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|Q8DVG8|RLMN_STRMU Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|A8AVZ7|RLMN_STRGC Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|Q8E1A3|RLMN_STRA5 Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|Q3K2R2|RLMN_STRA1 Ribosomal RNA large subunit methyltransfera...    31   5.8  
sp|O15553|MEFV_HUMAN Pyrin OS=Homo sapiens GN=MEFV PE=1 SV=1           30   7.5  

>sp|A4W3A5|RLMN_STRS2 Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus suis (strain 98HAH33) GN=rlmN PE=3
           SV=1
          Length = 370

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCSRSTYPR 562
           + YL E+P+ +L+E +   Q+   S    ++VG   GC+FC+    P+
Sbjct: 78  IKYLFELPDGMLIETVLMHQHYGLSVCVTTQVGCNIGCTFCASGLIPK 125


>sp|Q8S985|ARFO_ORYSJ Auxin response factor 15 OS=Oryza sativa
           subsp. japonica GN=ARF15 PE=2 SV=1
          Length = 712

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = -2

Query: 456 RRTVFGISSKYERNETGTSKAMAAKYPFCGESTQGQR*RE------RHGKKRPEIDIVSW 295
           RR  FG S   ER E    +     YP  GE   GQ   E      RHGK  P+   V  
Sbjct: 590 RRVRFGPSEGIERRE---QRIPLQPYPTSGEVIDGQVTVEKSHSPGRHGKDGPDNKAVGT 646

Query: 294 SSCFCFYLNLIE 259
           +SC  F ++L E
Sbjct: 647 NSCKIFGISLTE 658


>sp|Q48SK0|RLMN_STRPM Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus pyogenes serotype M28 GN=rlmN PE=3
           SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+ +L+E +   Q+  +S    ++VG   GC+FC+
Sbjct: 78  VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|A2RDK1|RLMN_STRPG Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus pyogenes serotype M5 (strain
           Manfredo) GN=rlmN PE=3 SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+ +L+E +   Q+  +S    ++VG   GC+FC+
Sbjct: 78  VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q1J5R7|RLMN_STRPF Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus pyogenes serotype M4 (strain
           MGAS10750) GN=rlmN PE=3 SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+ +L+E +   Q+  +S    ++VG   GC+FC+
Sbjct: 78  VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q1JG02|RLMN_STRPD Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus pyogenes serotype M2 (strain
           MGAS10270) GN=rlmN PE=3 SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+ +L+E +   Q+  +S    ++VG   GC+FC+
Sbjct: 78  VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q1JKX6|RLMN_STRPC Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus pyogenes serotype M12 (strain
           MGAS9429) GN=rlmN PE=3 SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+ +L+E +   Q+  +S    ++VG   GC+FC+
Sbjct: 78  VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q1JAS5|RLMN_STRPB Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus pyogenes serotype M12 (strain
           MGAS2096) GN=rlmN PE=3 SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+ +L+E +   Q+  +S    ++VG   GC+FC+
Sbjct: 78  VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q8P058|RLMN_STRP8 Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus pyogenes serotype M18 GN=rlmN PE=3
           SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+ +L+E +   Q+  +S    ++VG   GC+FC+
Sbjct: 78  VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q5XAZ6|RLMN_STRP6 Ribosomal RNA large subunit methyltransferase
           N OS=Streptococcus pyogenes serotype M6 GN=rlmN PE=3
           SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+ +L+E +   Q+  +S    ++VG   GC+FC+
Sbjct: 78  VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119
tr_hit_id A1A0H2
Definition tr|A1A0H2|A1A0H2_BIFAA LacI-family transcriptional regulator OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083)
Align length 58
Score (bit) 35.4
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914503|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_F05.
         (613 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1A0H2|A1A0H2_BIFAA LacI-family transcriptional regulator OS=...    35   2.7  
tr|B6XVS4|B6XVS4_9BIFI Putative uncharacterized protein OS=Bifid...    35   2.7  
tr|B6XL79|B6XL79_9BIFI Putative uncharacterized protein OS=Bifid...    35   2.7  
tr|A7A4C9|A7A4C9_BIFAD Putative uncharacterized protein OS=Bifid...    35   2.7  
tr|B1SDD5|B1SDD5_9STRE Putative uncharacterized protein OS=Strep...    34   5.9  

>tr|A1A0H2|A1A0H2_BIFAA LacI-family transcriptional regulator
           OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
           20083) GN=BAD_0424 PE=4 SV=1
          Length = 339

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = -2

Query: 567 QVLG*VLREQKLHPERVPTLESGNREYL-SFWVQGIFSRRT-----VFGISSKYERNE 412
           +VL   +RE KLH   V T E GNR++  S W+  +  R+T     VF   ++ ERN+
Sbjct: 80  EVLRGAIREAKLHDLNVITTEGGNRQHPDSSWIDNMLRRQTDGAILVFSSLTRIERNK 137


>tr|B6XVS4|B6XVS4_9BIFI Putative uncharacterized protein
           OS=Bifidobacterium catenulatum DSM 16992 GN=BIFCAT_01340
           PE=4 SV=1
          Length = 338

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = -2

Query: 567 QVLG*VLREQKLHPERVPTLESGNREYL-SFWVQGIFSRRT-----VFGISSKYERNE 412
           +VL   +RE KLH   V T E GNR++  S W+  +  R+T     VF   ++ ERN+
Sbjct: 80  EVLRGAIREAKLHDLNVITTEGGNRQHPDSSWIDNMLRRQTDGAILVFSSLTRIERNK 137


>tr|B6XL79|B6XL79_9BIFI Putative uncharacterized protein
           OS=Bifidobacterium pseudocatenulatum DSM 20438
           GN=BIFPSEUDO_00053 PE=4 SV=1
          Length = 338

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = -2

Query: 567 QVLG*VLREQKLHPERVPTLESGNREYL-SFWVQGIFSRRT-----VFGISSKYERNE 412
           +VL   +RE KLH   V T E GNR++  S W+  +  R+T     VF   ++ ERN+
Sbjct: 80  EVLRGAIREAKLHDLNVITTEGGNRQHPDSSWIDNMLRRQTDGAILVFSSLTRIERNK 137


>tr|A7A4C9|A7A4C9_BIFAD Putative uncharacterized protein
           OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_00687
           PE=4 SV=1
          Length = 339

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = -2

Query: 567 QVLG*VLREQKLHPERVPTLESGNREYL-SFWVQGIFSRRT-----VFGISSKYERNE 412
           +VL   +RE KLH   V T E GNR++  S W+  +  R+T     VF   ++ ERN+
Sbjct: 80  EVLRGAIREAKLHDLNVITTEGGNRQHPDSSWIDNMLRRQTDGAILVFSSLTRIERNK 137


>tr|B1SDD5|B1SDD5_9STRE Putative uncharacterized protein
           OS=Streptococcus infantarius subsp. infantarius ATCC
           BAA-102 GN=STRINF_00682 PE=4 SV=1
          Length = 366

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 419 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 544
           + YL E+P+++L+E +   Q+   S    S+VG   GCSFC+
Sbjct: 85  VKYLFELPDSMLIETVLMRQHYGLSVCVTSQVGCNIGCSFCA 126