BP914495 |
Clone id |
YMU001_000059_E08 |
Library |
YMU01 |
Length |
565 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000059_E08. |
Accession |
BP914495 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTTTTTTTTAGGATATGATCCCCAAGGTTATCTTGCATGCTACGATAGGAGATGACAAGC CGAGGTGTACCTGAGGACCAAATGAATTTGGCTTTTGGACAGTTTGTGGATTTGAATTTG AAACAAGTGTACCAAGAGGTAGCAGAGTGTTCTTTCCAACGGTGGAGTGAATTTGCAGAC GCTTTGATCCATGCAAGCTTTGCGGTACTAGACCTTGAGATTGAACAACTTACATCCAAA AAACAAAGGCAATGTGAAGATGATTTAAGCGATAAATCGAGGGCTTTTACATCGGTATGT ACCCAGCAAGAGGCTCTTCTAAATTTGAGTGATTTGAAGGATAACGCATTATTGGATATT GAAGACGTGGACATAGTTGAAACTGGATAAGCTAGTTTCCGATTGTATGATGGAAAAAGT GAGCCTGAGAGTTTGCAAAGTAGTGATCAGGATTCTTTTAAGAAACCTACGGAGATTTCC ACGGATGAATCGTGTGAGTATAAATTAATTTGGTTATTTGAAGCTCACGATGAAGCTGAT ATCGAGGATCTACAAGATGATGCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q118P4 |
Definition |
sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) |
Align length |
84 |
Score (bit) |
34.3 |
E-value |
0.44 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914495|Adiantum capillus-veneris mRNA, clone: YMU001_000059_E08. (565 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (... 34 0.44 sp|Q6TGC4|PADI6_HUMAN Protein-arginine deiminase type-6 OS=Homo ... 32 1.7 sp|Q10059|CDC12_SCHPO Cell division control protein 12 OS=Schizo... 32 2.9 sp|Q6YXR1|CEMA_PHYPA Chloroplast envelope membrane protein OS=Ph... 31 4.8 sp|A2T345|CEMA_ANGEV Chloroplast envelope membrane protein OS=An... 31 4.8 sp|Q9JL35|NSBP1_MOUSE Nucleosome-binding protein 1 OS=Mus muscul... 31 4.9 sp|Q7V9T7|HEM6_PROMA Coproporphyrinogen 3 oxidase, aerobic OS=Pr... 31 4.9 sp|Q6AY04|CB047_RAT Uncharacterized protein C2orf47 homolog, mit... 31 4.9 sp|P43611|YFK9_YEAST Uncharacterized protein YFR039C OS=Saccharo... 30 6.4 sp|Q9VIS1|CDGAP_DROME GTPase-activating protein CdGAPr OS=Drosop... 30 6.4 sp|Q8BHE8|CB047_MOUSE Uncharacterized protein C2orf47 homolog, m... 30 6.4 sp|P21981|TGM2_MOUSE Protein-glutamine gamma-glutamyltransferase... 30 8.2 sp|P12211|CEMA_MARPO Chloroplast envelope membrane protein OS=Ma... 30 8.2 sp|Q85AP4|CEMA_ANTFO Chloroplast envelope membrane protein OS=An... 30 8.2 sp|A4UGR9|XIRP2_HUMAN Xin actin-binding repeat-containing protei... 30 8.3 sp|O95786|DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58 ... 30 8.3
>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1 Length = 485
Score = 34.3 bits (77), Expect = 0.44 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Frame = +1
Query: 79 QMNLAFGQFVDLNLKQVY----QEVAECSFQRWSEFADALIHASFAVLDLEIEQLTSKKQ 246 QM+L GQF+ ++ + QE E S Q SE+++A + V + +++L K+ Sbjct: 201 QMDLKEGQFIPGFIEGIVGMKLQETKEISAQFPSEYSEANLAGKPVVFTVTLKELKEKEL 260
Query: 247 RQCEDDLSDKSRAFTSVCTQQEAL 318 + +DDL+ + F ++ +E L Sbjct: 261 PELDDDLAQEISEFETIDKLREFL 284
>sp|Q6TGC4|PADI6_HUMAN Protein-arginine deiminase type-6 OS=Homo sapiens GN=PADI6 PE=2 SV=2 Length = 686
Score = 32.3 bits (72), Expect = 1.7 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 6/111 (5%) Frame = -3
Query: 416 FPS--YNRKLAYPVSTMSTS---SISNNALSFKSLKFRRASC-WVHTDVKALDLSLKSSS 255 FPS ++ ++Y VS + S SI L ++ FR A C ++ L++ L Sbjct: 256 FPSAEFSGLISYSVSLVEESQDPSIPETVLYKDTVVFRVAPCVFIPCTQVPLEVYLCREL 315
Query: 254 HCLCFLDVSCSISRSSTAKLAWIKASANSLHRWKEHSATSWYTCFKFKSTN 102 F+D +S S +++A + N L RW + YT K+T+ Sbjct: 316 QLQGFVDTVTKLSEKSNSQVASVYEDPNRLGRWLQDEMAFCYTQAPHKTTS 366
>sp|Q10059|CDC12_SCHPO Cell division control protein 12 OS=Schizosaccharomyces pombe GN=cdc12 PE=1 SV=1 Length = 1841
Score = 31.6 bits (70), Expect = 2.9 Identities = 26/118 (22%), Positives = 48/118 (40%) Frame = +1
Query: 109 DLNLKQVYQEVAECSFQRWSEFADALIHASFAVLDLEIEQLTSKKQRQCEDDLSDKSRAF 288 ++ L+++Y + SFQ + + +I LDL +++ ++ D + DK R Sbjct: 723 EVELRELYLLINSDSFQGSTNSKERIIEYLLDKLDLRKKEIAAESTLWSNDGIDDKLRDL 782
Query: 289 TSVCTQQEALLNLSDLKDNALLDIEDVDIVETG*ASFRLYDGKSEPESLQSSDQDSFK 462 ++Q + + +L I D Y G+S ESL S +S K Sbjct: 783 REQMSRQSS----QPSTVSTILQIPDKKFHRPFPRHLHRYVGRSASESLTSEKDESIK 836
>sp|Q6YXR1|CEMA_PHYPA Chloroplast envelope membrane protein OS=Physcomitrella patens GN=cemA PE=3 SV=1 Length = 439
Score = 30.8 bits (68), Expect = 4.8 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = -3
Query: 200 KLAWIKASANSLHRWKEHSATSWYTCFKFKS 108 KLAWI+AS N L WK + + S+++ K K+ Sbjct: 124 KLAWIEASLNDLDMWKYYYSFSFFSKEKQKT 154
>sp|A2T345|CEMA_ANGEV Chloroplast envelope membrane protein OS=Angiopteris evecta GN=cemA PE=3 SV=1 Length = 448
Score = 30.8 bits (68), Expect = 4.8 Identities = 17/55 (30%), Positives = 31/55 (56%) Frame = -3
Query: 200 KLAWIKASANSLHRWKEHSATSWYTCFKFKSTNCPKAKFIWSSGTPRLVISYRSM 36 KLAWI+A+ N L W+ HS + + + K ++ + + S TP +++Y S+ Sbjct: 134 KLAWIEATLNDLDIWR-HSYSVFSSSTKMENNLEQQFSVLESKDTPITMMAYESI 187
>sp|Q9JL35|NSBP1_MOUSE Nucleosome-binding protein 1 OS=Mus musculus GN=Nsbp1 PE=1 SV=2 Length = 406
Score = 30.8 bits (68), Expect = 4.9 Identities = 22/92 (23%), Positives = 37/92 (40%) Frame = +1
Query: 214 LEIEQLTSKKQRQCEDDLSDKSRAFTSVCTQQEALLNLSDLKDNALLDIEDVDIVETG*A 393 +E E++ + E+D +K A + E N+ D++ +D D E Sbjct: 92 MEAEEVKEQINEDTEEDGGEKKEAVAAEAKDDELKANIQDVE-------KDEDGKEHKDT 144
Query: 394 SFRLYDGKSEPESLQSSDQDSFKKPTEISTDE 489 + DGK E E L + + E+S DE Sbjct: 145 GEEVEDGKIEEEGLNEKPGTAKSEDAEVSKDE 176
>sp|Q7V9T7|HEM6_PROMA Coproporphyrinogen 3 oxidase, aerobic OS=Prochlorococcus marinus GN=hemF PE=3 SV=1 Length = 343
Score = 30.8 bits (68), Expect = 4.9 Identities = 17/33 (51%), Positives = 19/33 (57%) Frame = +1
Query: 406 YDGKSEPESLQSSDQDSFKKPTEISTDESCEYK 504 Y K+ PES +S D F KP E TDES E K Sbjct: 303 YGFKAPPESRESLLTDVFTKPQEWFTDESLEEK 335
>sp|Q6AY04|CB047_RAT Uncharacterized protein C2orf47 homolog, mitochondrial OS=Rattus norvegicus PE=2 SV=1 Length = 291
Score = 30.8 bits (68), Expect = 4.9 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Frame = +1
Query: 151 SFQRWSEFADALIHASFAVLDLEIEQLTSKKQRQCEDDLSDKSRAFTSVCTQQEALLNLS 330 +F W+ F A F+ + SK QC+ DL ++ A + +E + +LS Sbjct: 128 AFLIWAYFDKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQVLKEKVASLS 187
Query: 331 DLKDNAL-LDIEDVDIVETG*ASFRLYDGK 417 D NAL DI+D+ TG S YD K Sbjct: 188 DNHKNALAADIDDIVYTSTGDISI-YYDEK 216
>sp|P43611|YFK9_YEAST Uncharacterized protein YFR039C OS=Saccharomyces cerevisiae GN=YFR039C PE=1 SV=1 Length = 510
Score = 30.4 bits (67), Expect = 6.4 Identities = 18/98 (18%), Positives = 44/98 (44%) Frame = +1
Query: 49 EMTSRGVPEDQMNLAFGQFVDLNLKQVYQEVAECSFQRWSEFADALIHASFAVLDLEIEQ 228 ++ + + +D + G L+ E + ++ W + D+ IH++ A+LD EI+ Sbjct: 217 QLVTAAILQDLSKIIIGSNSHAELETYEAESLKMEYEAWIKAIDSKIHSAMALLDSEIQS 276
Query: 229 LTSKKQRQCEDDLSDKSRAFTSVCTQQEALLNLSDLKD 342 + + + +++ + +Q L+ S +KD Sbjct: 277 VFEAEVQNKSIEITRNLDDLNTTVNEQLVFLD-SKIKD 313
>sp|Q9VIS1|CDGAP_DROME GTPase-activating protein CdGAPr OS=Drosophila melanogaster GN=CdGAPr PE=1 SV=2 Length = 1843
Score = 30.4 bits (67), Expect = 6.4 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -2
Query: 204 RKACMDQSVCKFTPPLERTLCYLLVHLFQIQIH 106 R M ++V K PP RTL YL HL+++ H Sbjct: 532 RLRLMKETVLKLPPPHYRTLKYLAEHLYKVSQH 564
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7BW70 |
Definition |
tr|B7BW70|B7BW70_9FIRM Putative uncharacterized protein (Fragment) OS=Roseburia intestinalis L1-82 |
Align length |
81 |
Score (bit) |
35.8 |
E-value |
1.7 |
Report |
|