BP914467
Clone id YMU001_000059_C03
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTGGAAGAATTTGCGGCCGCGAATTCTTCGAGTTAGATTCAAGTCGTACACAACTGGGCC
TGCCCGTATATCTGACAGGGAAAAGAAAGCACCCTTGAAAACCTGAGAGACGTGTCCGAT
TGCTCGAAGATGTAGCATGTATTTGCATATCTTTGTAGTTTTTGTGATGGGGAGAGCTTG
CCGAGACGGAGCTCATGCACGGAAGTGCCCATCACAGTTGCAGCTCGCCCTACTCTTTCT
GCTGAATGCAACATCTACTGATTTGAGAAATCTACACTGCAAGCCTAGCAAAGGTTGAAG
AGTTGGTATACCGCCATTTTGTTACTGCCATTGGGCACCTTATCCTTCACCTCCATTCCA
CATTTCAATGTAGATGTTCTTCAAGAACTGGCTCTTGCTTCTTTTATGGTAAGAGTCAAA
ATTTACCATTTTCACACCCCCTACAACATGTAAGTTCTTTATTATTTACACAAAAGCTTG
ATATAAGTTGTTGAGTAATGTGGAGGGCCA
■■Homology search results ■■ -
sp_hit_id Q5VT52
Definition sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo sapiens
Align length 27
Score (bit) 29.3
E-value 9.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914467|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_C03.
(481 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA domain-cont... 29 9.8

>sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA
domain-containing protein 2 OS=Homo sapiens GN=RPRD2
PE=1 SV=1
Length = 1461

Score = 29.3 bits (64), Expect = 9.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2

Query: 143 ESLPRRSSCTEVPITVAARPTLSAECN 223
E++ + SSCT VP+T+ A P L N
Sbjct: 408 ENISKASSCTPVPVTMTATPPLPKPVN 434


tr_hit_id A7P6K6
Definition tr|A7P6K6|A7P6K6_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 23
Score (bit) 44.3
E-value 0.003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914467|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_C03.
(481 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7P6K6|A7P6K6_VITVI Chromosome chr9 scaffold_7, whole genome ... 44 0.003
tr|A5BWT9|A5BWT9_VITVI Putative uncharacterized protein OS=Vitis... 44 0.003
tr|Q5W796|Q5W796_ORYSJ Os05g0357600 protein OS=Oryza sativa subs... 44 0.004
tr|B8AX42|B8AX42_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.004
tr|A3B333|A3B333_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.004
tr|A9SL22|A9SL22_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005
tr|Q9LQK0|Q9LQK0_ARATH F28G4.4 protein (At1g17470) OS=Arabidopsi... 39 0.098
tr|Q9LNQ8|Q9LNQ8_ARATH F1L3.17 OS=Arabidopsis thaliana PE=4 SV=1 39 0.098
tr|Q9CAI1|Q9CAI1_ARATH Putative GTP-binding protein; 56356-53974... 39 0.098
tr|Q94K69|Q94K69_ARATH Putative developmentally regulated GTP-bi... 39 0.098
tr|Q56Z00|Q56Z00_ARATH GTP-binding like protein (Fragment) OS=Ar... 39 0.098
tr|O04174|O04174_ARATH GTP-binding protein (Developmentally regu... 39 0.098
tr|O22445|O22445_PEA Developmentally regulated GTP binding prote... 39 0.13
tr|B6TJC5|B6TJC5_MAIZE Developmentally-regulated GTP-binding pro... 39 0.13
tr|B7HIN7|B7HIN7_BACCE Acetolactate synthase, large subunit, bio... 33 5.4

>tr|A7P6K6|A7P6K6_VITVI Chromosome chr9 scaffold_7, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00034107001
PE=4 SV=1
Length = 399

Score = 44.3 bits (103), Expect = 0.003
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLKT 74
RFKS++T PARISDREKKAPLKT
Sbjct: 377 RFKSHSTAPARISDREKKAPLKT 399


>tr|A5BWT9|A5BWT9_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_012358 PE=4 SV=1
Length = 218

Score = 44.3 bits (103), Expect = 0.003
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLKT 74
RFKS++T PARISDREKKAPLKT
Sbjct: 196 RFKSHSTAPARISDREKKAPLKT 218


>tr|Q5W796|Q5W796_ORYSJ Os05g0357600 protein OS=Oryza sativa subsp.
japonica GN=OJ1045_C06.7 PE=2 SV=1
Length = 399

Score = 43.9 bits (102), Expect = 0.004
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLKT 74
RFKS+T PARISDREKKAPLKT
Sbjct: 377 RFKSHTNAPARISDREKKAPLKT 399


>tr|B8AX42|B8AX42_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_19615 PE=4 SV=1
Length = 399

Score = 43.9 bits (102), Expect = 0.004
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLKT 74
RFKS+T PARISDREKKAPLKT
Sbjct: 377 RFKSHTNAPARISDREKKAPLKT 399


>tr|A3B333|A3B333_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_017455 PE=4 SV=1
Length = 146

Score = 43.9 bits (102), Expect = 0.004
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLKT 74
RFKS+T PARISDREKKAPLKT
Sbjct: 124 RFKSHTNAPARISDREKKAPLKT 146


>tr|A9SL22|A9SL22_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165484 PE=4 SV=1
Length = 517

Score = 43.5 bits (101), Expect = 0.005
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLK 71
RFKS+TTGP RI+DREKKAPLK
Sbjct: 427 RFKSHTTGPVRIADREKKAPLK 448


>tr|Q9LQK0|Q9LQK0_ARATH F28G4.4 protein (At1g17470) OS=Arabidopsis
thaliana GN=At1g17470 PE=2 SV=1
Length = 399

Score = 39.3 bits (90), Expect = 0.098
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLK 71
RFKS++ PARI+DREKKAPLK
Sbjct: 377 RFKSHSNAPARIADREKKAPLK 398


>tr|Q9LNQ8|Q9LNQ8_ARATH F1L3.17 OS=Arabidopsis thaliana PE=4 SV=1
Length = 412

Score = 39.3 bits (90), Expect = 0.098
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLK 71
RFKS++ PARI+DREKKAPLK
Sbjct: 390 RFKSHSNAPARIADREKKAPLK 411


>tr|Q9CAI1|Q9CAI1_ARATH Putative GTP-binding protein; 56356-53974
(Putative GTP-binding protein) OS=Arabidopsis thaliana
GN=At1g72660/F28P22_15 PE=2 SV=1
Length = 399

Score = 39.3 bits (90), Expect = 0.098
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLK 71
RFKS++ PARI+DREKKAPLK
Sbjct: 377 RFKSHSNAPARIADREKKAPLK 398


>tr|Q94K69|Q94K69_ARATH Putative developmentally regulated
GTP-binding protein OS=Arabidopsis thaliana GN=At1g17470
PE=2 SV=1
Length = 399

Score = 39.3 bits (90), Expect = 0.098
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3

Query: 6 RFKSYTTGPARISDREKKAPLK 71
RFKS++ PARI+DREKKAPLK
Sbjct: 377 RFKSHSNAPARIADREKKAPLK 398