BP914462 |
Clone id |
YMU001_000059_B10 |
Library |
YMU01 |
Length |
524 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000059_B10. |
Accession |
BP914462 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AAGCGGAAGAATTCGCGGCCGCAGGAATTGGATTTCCTGTTTGTTTTTGAACCCCAATGG CCATCATTAATGACTTAATATTGTGAAATCCCCACTAATGTCATCAGTCCCCAACAAAAT GGGATTGGGCCCTTACCATCACAATATGGGAGGCAACTTCTACCATCTGTATATGTGCAT GAACGCTGGCATGCATGTGTGTGCTTGTGTATATGGTTTTGGTCTCTATTTGGTTCTCTA TATGCAAAATGAGCCGCTAGCTGTACGTGAAACACAAAATTTTCCATCCCCTATATCATA GTTTGGAGGACACTTGTAGTCTTGCTTGAAGAGACTCTAAGACAGCATCCAAGAACTCCT CTGTGCTGAGATACTGGCCTCTTGTCACCTTGGGTCCATGACTGAGTATTGCTAGGTCCT TCGTCATTTTTCCTGATTCAACTGTCTCAACTCAAGCAGGCTCCAACTTGAGTGCAAAAT CGAGCAGCCTTTCATTATCATCAAGCTTTGCCCTATGCCCAAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P50218 |
Definition |
sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum |
Align length |
69 |
Score (bit) |
91.3 |
E-value |
2.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914462|Adiantum capillus-veneris mRNA, clone: YMU001_000059_B10. (495 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotian... 91 2e-18 sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine ... 89 1e-17 sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum ... 87 4e-17 sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplas... 86 9e-17 sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic... 67 6e-11 sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic... 67 6e-11 sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondr... 66 8e-11 sp|O88844|IDHC_MOUSE Isocitrate dehydrogenase [NADP] cytoplasmic... 66 8e-11 sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic O... 66 1e-10 sp|Q5R9C5|IDHC_PONAB Isocitrate dehydrogenase [NADP] cytoplasmic... 65 1e-10 sp|P65097|IDH_MYCTU Isocitrate dehydrogenase [NADP] OS=Mycobacte... 65 2e-10 sp|P65098|IDH_MYCBO Isocitrate dehydrogenase [NADP] OS=Mycobacte... 65 2e-10 sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic... 65 2e-10 sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic... 65 2e-10 sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic... 65 2e-10 sp|Q75JR3|IDHC_DICDI Isocitrate dehydrogenase [NADP] cytoplasmic... 62 2e-09 sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], m... 60 5e-09 sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondria... 58 3e-08 sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondr... 58 3e-08 sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondr... 57 4e-08 sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondr... 57 4e-08 sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondria... 56 8e-08 sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondr... 56 8e-08 sp|O13285|IDH1_CANTR Isocitrate dehydrogenase [NADP], mitochondr... 54 5e-07 sp|P53982|IDHH_YEAST Isocitrate dehydrogenase [NADP] OS=Saccharo... 51 3e-06 sp|O13294|IDH2_CANTR Isocitrate dehydrogenase [NADP] peroxisomal... 50 6e-06 sp|P50215|IDH_SPHYA Isocitrate dehydrogenase [NADP] OS=Sphingomo... 49 2e-05 sp|P41939|IDHC_YEAST Isocitrate dehydrogenase [NADP] cytoplasmic... 47 6e-05 sp|P21954|IDHP_YEAST Isocitrate dehydrogenase [NADP], mitochondr... 45 2e-04 sp|Q6ZSR6|YP007_HUMAN Putative uncharacterized protein FLJ45256 ... 31 3.6
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Length = 415
Score = 91.3 bits (225), Expect = 2e-18 Identities = 45/69 (65%), Positives = 55/69 (79%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHGPKVTRGQYLSTEEFLDA 315 L HRA LD+NERLLDF KLE A + VESGKMTKDLA++ HG K++R YL+TEEF+DA Sbjct: 342 LAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDA 401
Query: 314 VLESLQARL 288 V + L+ARL Sbjct: 402 VADELKARL 410
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Length = 413
Score = 89.0 bits (219), Expect = 1e-17 Identities = 44/69 (63%), Positives = 53/69 (76%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHGPKVTRGQYLSTEEFLDA 315 L HRAKLDDN +LLDF KLE A + VE+GKMTKDLA++ HG K++R YL+TEEF+DA Sbjct: 343 LAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDA 402
Query: 314 VLESLQARL 288 V L ARL Sbjct: 403 VAAELSARL 411
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Length = 416
Score = 87.0 bits (214), Expect = 4e-17 Identities = 46/70 (65%), Positives = 55/70 (78%), Gaps = 1/70 (1%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLA-ILSHGPKVTRGQYLSTEEFLD 318 L HRA LD+NERLLDF KLE A + VESGKMTKDLA I+ HG K++R YL+TEEF+D Sbjct: 342 LAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFID 401
Query: 317 AVLESLQARL 288 AV + L+ARL Sbjct: 402 AVADELKARL 411
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Length = 433
Score = 85.9 bits (211), Expect = 9e-17 Identities = 42/69 (60%), Positives = 52/69 (75%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHGPKVTRGQYLSTEEFLDA 315 L HRAKLDDN LLDF KLE A + VESGKMTKDLA++ HG K++R YL+TEEF+DA Sbjct: 363 LAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDA 422
Query: 314 VLESLQARL 288 V L+ ++ Sbjct: 423 VAAELKTKI 431
>sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1 Length = 414
Score = 66.6 bits (161), Expect = 6e-11 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHG-PKVTRGQYLSTEEFLD 318 L HRAKLD+N+ L FA LE +ET+E+G MTKDLA G P V R YL+T EF+D Sbjct: 340 LAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
Query: 317 AVLESLQARL 288 + E+LQ +L Sbjct: 400 KLGENLQLKL 409
>sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1 Length = 414
Score = 66.6 bits (161), Expect = 6e-11 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHG-PKVTRGQYLSTEEFLD 318 L HRAKLD+N+ L FA LE +ET+E+G MTKDLA G P V R YL+T EF+D Sbjct: 340 LAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
Query: 317 AVLESLQARL 288 + E+LQ +L Sbjct: 400 KLGENLQLKL 409
>sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1 Length = 428
Score = 66.2 bits (160), Expect = 8e-11 Identities = 34/63 (53%), Positives = 45/63 (71%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHGPKVTRGQYLSTEEFLDA 315 LG R KLD+N+ L+ FA +E A VE++ESG MTKDLAI G +V R YL+TEE+++ Sbjct: 360 LGQRGKLDNNKDLVKFAQDMEKACVESIESGFMTKDLAICIKGNQVKRSNYLNTEEYINK 419
Query: 314 VLE 306 V E Sbjct: 420 VAE 422
>sp|O88844|IDHC_MOUSE Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1 Length = 414
Score = 66.2 bits (160), Expect = 8e-11 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHG-PKVTRGQYLSTEEFLD 318 L HRAKLD+N L FA LE +ET+E+G MTKDLA G P V R YL+T EF+D Sbjct: 340 LAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
Query: 317 AVLESLQARL 288 + E+L+A+L Sbjct: 400 KLGENLKAKL 409
>sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1 Length = 414
Score = 65.9 bits (159), Expect = 1e-10 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHG-PKVTRGQYLSTEEFLD 318 L HRAKLD+N L FA LE +ET+E+G MTKDLA G P V R YL+T EF+D Sbjct: 340 LAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
Query: 317 AVLESLQARL 288 + E+L+A+L Sbjct: 400 KLGENLKAKL 409
>sp|Q5R9C5|IDHC_PONAB Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2 Length = 414
Score = 65.5 bits (158), Expect = 1e-10 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Frame = -2
Query: 494 LGHRAKLDDNERLLDFALKLEPA*VETVESGKMTKDLAILSHG-PKVTRGQYLSTEEFLD 318 L HRAKLD+N+ L FA LE VET+E+G MTKDLA G P V R YL+T EF+D Sbjct: 340 LAHRAKLDNNKELAFFANALEEVSVETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
Query: 317 AVLESLQARL 288 + E+L+ +L Sbjct: 400 KLGENLKIKL 409
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9XHX4 |
Definition |
tr|Q9XHX4|Q9XHX4_ORYSJ cDNA clone:J023139I05, full insert sequence OS=Oryza sativa subsp. japonica |
Align length |
75 |
Score (bit) |
106.0 |
E-value |
7.0e-22 |
Report |
|