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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914450
Clone id YMU001_000059_A10
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGGAAGAATTCGCGGCCGCAGGAATATTGTGTATTTCCGTTTTCAAGACAACCCATTTCA
TTGCAGTAAACAATTTGTCCATAGAAAGCCTAGTGTACTAGTTTCGAGACATTCCAGCTT
TCTCGAGTACATATAAATTTACAACGGCTTCGAAATTTGCCGTGAGAAAGAAGAACAGCT
TGCTGCCCTTTTACAATCTGGACTCCTCAGCTTGCATGGAGGCCATTATTGAGAGCCACA
ATCTGCCTACCCAGGTAGCTTTGTCACTTGCACTTCTTCGGTTGACGTGTATCTTTTCCT
CTTTGAGTGACTGACACTCCTTGCTAACATTCCTTCAGGTGATACAAAGCATAGCACACC
ATCTGTTTCTCACCATTTCGATGGTTCAGATATGCAAGAGCTCCTCTTCCCCAAGAAATA
TCATTCCTTTACTTTGGGTACTTCTTCTCCAGCATCAGTCCTTCGTGTACGTCAAGGGGA
CCGAGGTCCGTGTACGACT
■■Homology search results ■■ -
sp_hit_id Q6NRP2
Definition sp|Q6NRP2|PSME4_XENLA Proteasome activator complex subunit 4 OS=Xenopus laevis
Align length 59
Score (bit) 32.0
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914450|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_A10.
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NRP2|PSME4_XENLA Proteasome activator complex subunit 4 OS=...    32   1.4  
sp|Q754G5|ARP4_ASHGO Actin-related protein 4 OS=Ashbya gossypii ...    32   1.9  
sp|Q3V3R4|ITA1_MOUSE Integrin alpha-1 OS=Mus musculus GN=Itga1 P...    30   4.2  
sp|P36079|YKI3_YEAST Putative uncharacterized protein YKL083W OS...    30   5.4  
sp|Q86UE8|TLK2_HUMAN Serine/threonine-protein kinase tousled-lik...    30   5.4  
sp|O35659|GLP1R_MOUSE Glucagon-like peptide 1 receptor OS=Mus mu...    30   5.4  
sp|O15360|FANCA_HUMAN Fanconi anemia group A protein OS=Homo sap...    30   5.4  
sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1...    30   5.5  
sp|O55047|TLK2_MOUSE Serine/threonine-protein kinase tousled-lik...    30   7.1  
sp|Q09891|ATCX_SCHPO Putative phospholipid-transporting ATPase C...    30   7.1  
sp|P32301|GLP1R_RAT Glucagon-like peptide 1 receptor OS=Rattus n...    29   9.3  

>sp|Q6NRP2|PSME4_XENLA Proteasome activator complex subunit 4
            OS=Xenopus laevis GN=psme4 PE=2 SV=1
          Length = 1828

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/59 (32%), Positives = 34/59 (57%)
 Frame = +2

Query: 176  DSSACMEAIIESHNLPTQVALSLALLRLTCIFSSLSD*HSLLTFLQVIQSIAHHLFLTI 352
            D+  C+  + +   LP QV L L +LR T   SS    +++LT++Q +  + ++LF+ I
Sbjct: 1606 DAKTCLSLMSQGLLLPVQVPLVLDVLRQTARSSSWHARYTVLTYIQTM--VFYNLFIFI 1662


>sp|Q754G5|ARP4_ASHGO Actin-related protein 4 OS=Ashbya gossypii
           GN=ARP4 PE=3 SV=1
          Length = 479

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
 Frame = +2

Query: 140 RKKNSLLPFYNLDSSACMEAIIESHNLPTQVALSLALLRLTCIFSSLSD*HSLLTFLQVI 319
           RKK+  +   ++D SAC       + +PT  A+S A+ R TC+   +   H + +   V+
Sbjct: 120 RKKSLEVLLESMDFSAC-------YLVPTATAVSFAMGRPTCLVVDIG--HDVTSVCPVV 170

Query: 320 QSI-----AHHLFLTISMV-QICKSSSSPRNIIPLLWV 415
             +     +   ++  S++ ++ +S  +PR +IPL  V
Sbjct: 171 DGMTLSKSSMRSYIAGSLLNELIRSQLAPRKVIPLFQV 208


>sp|Q3V3R4|ITA1_MOUSE Integrin alpha-1 OS=Mus musculus GN=Itga1 PE=2
            SV=1
          Length = 1179

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 42/117 (35%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
 Frame = +2

Query: 110  KFTTASKFAVRKKNSLLPFYNLDSSACMEAIIESHNLP---TQVALSLALLRLTCI---F 271
            K  T SK  V K+ ++      D S C  A I  H LP   +QV +SL L + T I   F
Sbjct: 1044 KKMTISKSEVLKRGTIQ-----DCSTCKIATITCHLLPSDVSQVNVSLILWKPTFIKAHF 1098

Query: 272  SSLSD*HSLLTFLQVIQSIAHHLFLTIS------MVQICKSSSSPRNIIPLLWVLLL 424
            SSL+     LT    +QS    L L+ S       +QI K     R  +P LWV+LL
Sbjct: 1099 SSLN-----LTIRGELQSENSSLTLSSSNRKRELAIQISKDGLPGR--VP-LWVILL 1147


>sp|P36079|YKI3_YEAST Putative uncharacterized protein YKL083W
           OS=Saccharomyces cerevisiae GN=YKL083W PE=5 SV=1
          Length = 204

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
 Frame = +2

Query: 158 LPFYNLDSSACMEAIIESHNLPTQVA------------LSLALLRLTCIFSSLSD*HSLL 301
           LP +NL S+    A+     LPT               LS  +LR + +   LSD  S  
Sbjct: 43  LPVFNLPSNP---ALFFGTALPTYFLFIFSCLFLFLPLLSFLILRFSSLLFCLSDIVSST 99

Query: 302 TFLQVIQSIAHHLF-LTISMVQICKSSSSPRNIIPLLWVLLLQHQSFVY 445
           T L+ + SIA  LF  +   + +  S SS   +IP    +   H SF +
Sbjct: 100 TLLRSLHSIADFLFCASFLFIALRSSFSSSLILIPSACNIAFCHFSFSF 148


>sp|Q86UE8|TLK2_HUMAN Serine/threonine-protein kinase tousled-like 2
           OS=Homo sapiens GN=TLK2 PE=1 SV=2
          Length = 772

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 161 PFYNLDSSACMEAIIESHNLPTQVALSLALLRL 259
           P Y LD SA  EA  E   LPT +++ LA  RL
Sbjct: 127 PLYGLDGSAAKEATEEQSALPTLMSVMLAKPRL 159


>sp|O35659|GLP1R_MOUSE Glucagon-like peptide 1 receptor OS=Mus
           musculus GN=Glp1r PE=2 SV=1
          Length = 489

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 107 YKFTTASKFAVRKKNSLLPFYNLDSSACMEAIIESHNLPTQVALSLALL 253
           Y+F TA    + K NS LP+ +L  S C E+     N P +  LSL ++
Sbjct: 101 YRFCTAEGLWLHKDNSSLPWRDL--SECEESKRGERNFPEEQLLSLYII 147


>sp|O15360|FANCA_HUMAN Fanconi anemia group A protein OS=Homo sapiens
            GN=FANCA PE=1 SV=2
          Length = 1455

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 354  RWFRYARAPLPQEISFLYFGYFFSS--ISPSCTSRGP 458
            RW R+ ++PLP+E+  L  G  F+S  +SP   S  P
Sbjct: 1184 RWRRHCQSPLPRELQKLQEGRQFASDFLSPEAASPAP 1220


>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1
           OS=Homo sapiens GN=CLIP1 PE=1 SV=1
          Length = 1427

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -1

Query: 303 VSKECQSLKEEKIHVNRRSASDKATWVGRLWLSIMASMQAEESRL*KGSKLFFFLTANF 127
           +SKE +SLK +  H N+ ++   A W  +L  +I +  QA E      SK     TA F
Sbjct: 587 LSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEF 645


>sp|O55047|TLK2_MOUSE Serine/threonine-protein kinase tousled-like 2
           OS=Mus musculus GN=Tlk2 PE=2 SV=2
          Length = 718

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 161 PFYNLDSSACMEAIIESHNLPTQVALSLALLRL 259
           P Y LD SA  EA  E   LPT +++ LA  RL
Sbjct: 95  PLYGLDGSAAKEASEEQSALPTLMSVMLAKPRL 127


>sp|Q09891|ATCX_SCHPO Putative phospholipid-transporting ATPase
           C24B11.12c OS=Schizosaccharomyces pombe GN=SPAC24B11.12c
           PE=2 SV=1
          Length = 1402

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 178 VQIVKGQQAVLLSHGK--FRSRCKFICTRESWNVS 80
           ++IVK  QA+ +   K  +  + K+ CT +SWN+S
Sbjct: 523 IEIVKTIQAIFIYFDKDMYYKKLKYACTPKSWNIS 557
tr_hit_id A6BH96
Definition tr|A6BH96|A6BH96_9FIRM Putative uncharacterized protein OS=Dorea longicatena DSM 13814
Align length 33
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914450|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_A10.
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6BH96|A6BH96_9FIRM Putative uncharacterized protein OS=Dorea...    34   4.2  
tr|A9UP53|A9UP53_MONBE Predicted protein OS=Monosiga brevicollis...    33   5.4  
tr|Q69K22|Q69K22_ORYSJ Putative uncharacterized protein OSJNBa00...    33   7.1  
tr|Q9XYX8|Q9XYX8_DROME Regulator of G-protein signalling LOCO C2...    33   7.1  
tr|Q9VCX2|Q9VCX2_DROME Locomotion defects, isoform B OS=Drosophi...    33   7.1  
tr|Q9VCX1|Q9VCX1_DROME Locomotion defects, isoform D OS=Drosophi...    33   7.1  
tr|Q9UB06|Q9UB06_DROME Regulator of G-protein signalling LOCO C1...    33   7.1  
tr|Q9NGQ0|Q9NGQ0_DROME Regulator of G-protein signalling LOCO II...    33   7.1  
tr|Q8IN00|Q8IN00_DROME Locomotion defects, isoform C OS=Drosophi...    33   7.1  
tr|Q7KS58|Q7KS58_DROME Locomotion defects, isoform A OS=Drosophi...    33   7.1  
tr|B4PMC9|B4PMC9_DROYA GE24020 OS=Drosophila yakuba GN=GE24020 P...    33   7.1  
tr|B4HER1|B4HER1_DROSE GM23632 OS=Drosophila sechellia GN=GM2363...    33   7.1  

>tr|A6BH96|A6BH96_9FIRM Putative uncharacterized protein OS=Dorea
           longicatena DSM 13814 GN=DORLON_01672 PE=4 SV=1
          Length = 364

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 372 RAPLPQEISFLYFGYFFSSISPSCTSRGPRSVY 470
           R    + + + Y GYFFSS++PS T   P  +Y
Sbjct: 77  RVSFKEAMKYAYIGYFFSSVTPSATGGQPLQLY 109


>tr|A9UP53|A9UP53_MONBE Predicted protein OS=Monosiga brevicollis
           GN=21963 PE=4 SV=1
          Length = 710

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/61 (37%), Positives = 34/61 (55%)
 Frame = +2

Query: 215 NLPTQVALSLALLRLTCIFSSLSD*HSLLTFLQVIQSIAHHLFLTISMVQICKSSSSPRN 394
           +L   V+LSL+LL   CIF SLS   SL   L +  S++  LFL  +  +IC+   +  N
Sbjct: 4   SLCLSVSLSLSLLVCLCIFLSLS--LSLSLSLSLSLSLSFSLFLAFAFPRICRVGLTSSN 61

Query: 395 I 397
           +
Sbjct: 62  M 62


>tr|Q69K22|Q69K22_ORYSJ Putative uncharacterized protein
           OSJNBa0066B16.36 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0066B16.36 PE=4 SV=1
          Length = 131

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 299 ARSVSHSKRKRYTSTEEVQVTKLPG*ADCGSQ*WPPCKLRSPDCKRAASCSS 144
           +++V H  R+R+  T+++++      A  G+  WPP + R  D  R  S +S
Sbjct: 22  SKAVGHCSRRRHRHTDDIEIGSQSVAAVPGAMRWPPLRWRPKDAVRRPSFAS 73


>tr|Q9XYX8|Q9XYX8_DROME Regulator of G-protein signalling LOCO C2
           OS=Drosophila melanogaster GN=loco PE=2 SV=1
          Length = 1175

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = +2

Query: 5   CISVFKTTHFIAVNNLSIESLVY*FRDIPAFSSTYKFTTASKFAVRKKNSLLPFYNLDSS 184
           C+   +    +  + L ++ L+     + AFS   K  +AS    R++ SLLP++    S
Sbjct: 576 CVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKK--SASNAEDRRRKSLLPWHRKTRS 633

Query: 185 ACME----------AIIESHNLPTQVALSLALLRLTCIFSSLSD*HS 295
              +          A++ +  +P    L+ A L+L C  +SLSD HS
Sbjct: 634 KSRDRTEIMADMQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHS 680


>tr|Q9VCX2|Q9VCX2_DROME Locomotion defects, isoform B OS=Drosophila
           melanogaster GN=loco PE=2 SV=1
          Length = 1175

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = +2

Query: 5   CISVFKTTHFIAVNNLSIESLVY*FRDIPAFSSTYKFTTASKFAVRKKNSLLPFYNLDSS 184
           C+   +    +  + L ++ L+     + AFS   K  +AS    R++ SLLP++    S
Sbjct: 576 CVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKK--SASNAEDRRRKSLLPWHRKTRS 633

Query: 185 ACME----------AIIESHNLPTQVALSLALLRLTCIFSSLSD*HS 295
              +          A++ +  +P    L+ A L+L C  +SLSD HS
Sbjct: 634 KSRDRTEIMADMQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHS 680


>tr|Q9VCX1|Q9VCX1_DROME Locomotion defects, isoform D OS=Drosophila
            melanogaster GN=loco PE=2 SV=2
          Length = 1541

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = +2

Query: 5    CISVFKTTHFIAVNNLSIESLVY*FRDIPAFSSTYKFTTASKFAVRKKNSLLPFYNLDSS 184
            C+   +    +  + L ++ L+     + AFS   K  +AS    R++ SLLP++    S
Sbjct: 942  CVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKK--SASNAEDRRRKSLLPWHRKTRS 999

Query: 185  ACME----------AIIESHNLPTQVALSLALLRLTCIFSSLSD*HS 295
               +          A++ +  +P    L+ A L+L C  +SLSD HS
Sbjct: 1000 KSRDRTEIMADMQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHS 1046


>tr|Q9UB06|Q9UB06_DROME Regulator of G-protein signalling LOCO C1
           OS=Drosophila melanogaster GN=loco PE=2 SV=1
          Length = 829

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = +2

Query: 5   CISVFKTTHFIAVNNLSIESLVY*FRDIPAFSSTYKFTTASKFAVRKKNSLLPFYNLDSS 184
           C+   +    +  + L ++ L+     + AFS   K  +AS    R++ SLLP++    S
Sbjct: 230 CVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKK--SASNAEDRRRKSLLPWHRKTRS 287

Query: 185 ACME----------AIIESHNLPTQVALSLALLRLTCIFSSLSD*HS 295
              +          A++ +  +P    L+ A L+L C  +SLSD HS
Sbjct: 288 KSRDRTEIMADMQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHS 334


>tr|Q9NGQ0|Q9NGQ0_DROME Regulator of G-protein signalling LOCO III
           OS=Drosophila melanogaster GN=loco PE=2 SV=1
          Length = 872

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = +2

Query: 5   CISVFKTTHFIAVNNLSIESLVY*FRDIPAFSSTYKFTTASKFAVRKKNSLLPFYNLDSS 184
           C+   +    +  + L ++ L+     + AFS   K  +AS    R++ SLLP++    S
Sbjct: 273 CVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKK--SASNAEDRRRKSLLPWHRKTRS 330

Query: 185 ACME----------AIIESHNLPTQVALSLALLRLTCIFSSLSD*HS 295
              +          A++ +  +P    L+ A L+L C  +SLSD HS
Sbjct: 331 KSRDRTEIMADMQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHS 377


>tr|Q8IN00|Q8IN00_DROME Locomotion defects, isoform C OS=Drosophila
           melanogaster GN=loco PE=2 SV=1
          Length = 829

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = +2

Query: 5   CISVFKTTHFIAVNNLSIESLVY*FRDIPAFSSTYKFTTASKFAVRKKNSLLPFYNLDSS 184
           C+   +    +  + L ++ L+     + AFS   K  +AS    R++ SLLP++    S
Sbjct: 230 CVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKK--SASNAEDRRRKSLLPWHRKTRS 287

Query: 185 ACME----------AIIESHNLPTQVALSLALLRLTCIFSSLSD*HS 295
              +          A++ +  +P    L+ A L+L C  +SLSD HS
Sbjct: 288 KSRDRTEIMADMQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHS 334


>tr|Q7KS58|Q7KS58_DROME Locomotion defects, isoform A OS=Drosophila
           melanogaster GN=loco PE=1 SV=1
          Length = 1008

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = +2

Query: 5   CISVFKTTHFIAVNNLSIESLVY*FRDIPAFSSTYKFTTASKFAVRKKNSLLPFYNLDSS 184
           C+   +    +  + L ++ L+     + AFS   K  +AS    R++ SLLP++    S
Sbjct: 409 CVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKK--SASNAEDRRRKSLLPWHRKTRS 466

Query: 185 ACME----------AIIESHNLPTQVALSLALLRLTCIFSSLSD*HS 295
              +          A++ +  +P    L+ A L+L C  +SLSD HS
Sbjct: 467 KSRDRTEIMADMQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHS 513