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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914375
Clone id YMU001_000058_B12
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCGAAGCTAGCATTCAAAATCTTCTTCAGGAGTAGAACTGATACAAAGAAGCTTACACA
CCACTCCAAAAAATCATTGTTGCTAGCTTTTGAAGTAATGGTGAAAGGTGTGGAACTCTT
CTTGATCAGCTAAATCACAGATTACCACCTTTAATGTGCCCTCCCGATGAAATAATAAAT
GATGGAATTGTTGGCTTCACCTGTGGCTCCTGCAATAGTTTCCATAACTTATAGATGGAA
TTTCGGCAGATGGCGAGCATGGCTTTGACCTTCGCTGCAAAATTTCTCCTTTGAGGGAGC
AGCAATGAGAGAAGTTATGGACCAACGACTCAGTGCGCTCCCGCTCTTTGCTCTTGTCAA
ATAGTGTTGATCTGTCTTTGTGAGAATAGAGGGCTCTGCAGTCCAGCCAGGAGCACAAGT
CAACCAGGCTGCCTCCTGCGATTTGCACGTCCCCAAGGTCCCCTAAGCGCAGGGCTTGAA
GGGGGTTTTTCATCTTGCTAG
■■Homology search results ■■ -
sp_hit_id P32926
Definition sp|P32926|DSG3_HUMAN Desmoglein-3 OS=Homo sapiens
Align length 40
Score (bit) 34.7
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914375|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_B12.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32926|DSG3_HUMAN Desmoglein-3 OS=Homo sapiens GN=DSG3 PE=1 SV=1    35   0.26 
sp|Q71RG6|YH006_HUMAN Putative uncharacterized protein FP248 OS=...    34   0.34 
sp|Q0VGE8|Z816A_HUMAN Zinc finger protein 816A OS=Homo sapiens G...    30   6.3  
sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sap...    30   8.2  
sp|Q215E9|RS2_RHOPB 30S ribosomal protein S2 OS=Rhodopseudomonas...    30   8.2  
sp|Q7NWI9|HSLO_CHRVO 33 kDa chaperonin OS=Chromobacterium violac...    30   8.2  
sp|A6QP35|KR108_BOVIN Keratin-associated protein 10-8 OS=Bos tau...    30   8.3  
sp|Q496Z2|K0644_RAT Leucine-rich repeat-containing protein KIAA0...    30   8.3  
sp|Q9DBY4|K0644_MOUSE Leucine-rich repeat-containing protein KIA...    30   8.3  

>sp|P32926|DSG3_HUMAN Desmoglein-3 OS=Homo sapiens GN=DSG3 PE=1 SV=1
          Length = 999

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 370 ICLCENRGLCSPARSTSQPGCLLRFARPQ----GPLSAGL 477
           +C C+NRG+C  +  T+ PG   R+ RP     GP + GL
Sbjct: 586 VCQCDNRGICGTSYPTTSPG--TRYGRPHSGRLGPAAIGL 623


>sp|Q71RG6|YH006_HUMAN Putative uncharacterized protein FP248
           OS=Homo sapiens GN=FP248 PE=5 SV=1
          Length = 208

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 346 LCSCQIVLICLCENRGLCSPARSTSQPG 429
           LC C +VL CLC +  L  P  ST  PG
Sbjct: 8   LCGCSLVLSCLCPSASLPDPGNSTWPPG 35


>sp|Q0VGE8|Z816A_HUMAN Zinc finger protein 816A OS=Homo sapiens
           GN=ZNF816A PE=2 SV=1
          Length = 652

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -3

Query: 316 NFSHCCSLKGEILQRRSKPCSPSAEIPSISYGNYCRSHR*SQQFHHLLFHREGTLKVVIC 137
           NF H    + + +  R KPC  +    + +Y +  R        HH+   RE   K  +C
Sbjct: 211 NFLHSSFTQIQEICMREKPCQSNECGKAFNYSSLLRR-------HHITHSREREYKCDVC 263

Query: 136 -DLADQEEFHTFHH 98
             + +Q+++  +HH
Sbjct: 264 GKIFNQKQYIVYHH 277


>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens
            GN=ZFHX3 PE=1 SV=2
          Length = 3703

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = -3

Query: 382  HKDRSTLFDKSKERERTESLVHNFSHCCSLKGEILQRRSKPCSPSAEIPSISYGNYCRSH 203
            H  R+TLF   KER+R +   +NFS+      E L+  S+P  PS E P   Y    RS 
Sbjct: 2191 HWFRNTLF---KERQRNKDSPYNFSNPPITSLEELKIDSRP--PSPEPPKQEYWGSKRSS 2245

Query: 202  R 200
            R
Sbjct: 2246 R 2246


>sp|Q215E9|RS2_RHOPB 30S ribosomal protein S2 OS=Rhodopseudomonas
           palustris (strain BisB18) GN=rpsB PE=3 SV=1
          Length = 334

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 231 IDGIS-ADGEHGFDLRCKISPLREQ 302
           IDGIS A G+ GFD+   ++P+RE+
Sbjct: 224 IDGISRAQGDSGFDIGASVAPVREE 248


>sp|Q7NWI9|HSLO_CHRVO 33 kDa chaperonin OS=Chromobacterium violaceum
           GN=hslO PE=3 SV=1
          Length = 294

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 496 KMKNPLQALRLGDLGDVQIAGGSLVDLCSWLDCRALYSHKDRSTLFD 356
           ++ N L  L   ++GDV +  GS+  +C + + R ++  +D + LFD
Sbjct: 236 RVSNMLTMLGGQEVGDVLLEQGSVEIVCDYCNQRYVFDEEDANQLFD 282


>sp|A6QP35|KR108_BOVIN Keratin-associated protein 10-8 OS=Bos taurus
           GN=KRTAP10-8 PE=2 SV=1
          Length = 218

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +1

Query: 328 TQCAPALCSC--QIVLICL---CENRGLCSPARSTSQP 426
           T CAP+ C+   ++ LIC    CE+   C PA S+S P
Sbjct: 54  TCCAPSCCAPAPRLTLICAPVNCESSPCCQPACSSSSP 91


>sp|Q496Z2|K0644_RAT Leucine-rich repeat-containing protein KIAA0644
           homolog OS=Rattus norvegicus PE=2 SV=1
          Length = 811

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 340 PALCSCQIVLICLCENRGLCSPARSTSQPGCLLRFARPQGPLSAGLEGGF 489
           P  C CQ     LC NRGL +  +++S P        PQ  L+  L G F
Sbjct: 28  PERCDCQHPQHLLCTNRGLRAVPKTSSLPS-------PQDVLTYSLGGNF 70


>sp|Q9DBY4|K0644_MOUSE Leucine-rich repeat-containing protein
           KIAA0644 OS=Mus musculus GN=KIAA0644 PE=2 SV=1
          Length = 809

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 340 PALCSCQIVLICLCENRGLCSPARSTSQPGCLLRFARPQGPLSAGLEGGF 489
           P  C CQ     LC NRGL +  +++S P        PQ  L+  L G F
Sbjct: 28  PERCDCQHPQHLLCTNRGLRAVPKTSSLPS-------PQDVLTYSLGGNF 70
tr_hit_id A8K2V2
Definition tr|A8K2V2|A8K2V2_HUMAN cDNA FLJ75630, highly similar to Homo sapiens desmoglein 3 (pemphigus vulgaris antigen) (DSG3), mRNA OS=Homo sapiens
Align length 40
Score (bit) 34.7
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914375|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_B12.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8K2V2|A8K2V2_HUMAN cDNA FLJ75630, highly similar to Homo sap...    35   2.6  
tr|Q57XQ9|Q57XQ9_9TRYP Putative uncharacterized protein OS=Trypa...    34   3.4  
tr|Q580D1|Q580D1_9TRYP Putative uncharacterized protein OS=Trypa...    33   5.8  
tr|B6NKJ0|B6NKJ0_BRAFL Putative uncharacterized protein OS=Branc...    33   5.8  
tr|A6SQX8|A6SQX8_BOTFB Predicted protein OS=Botryotinia fuckelia...    33   9.7  

>tr|A8K2V2|A8K2V2_HUMAN cDNA FLJ75630, highly similar to Homo
           sapiens desmoglein 3 (pemphigus vulgaris antigen)
           (DSG3), mRNA OS=Homo sapiens PE=2 SV=1
          Length = 999

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 370 ICLCENRGLCSPARSTSQPGCLLRFARPQ----GPLSAGL 477
           +C C+NRG+C  +  T+ PG   R+ RP     GP + GL
Sbjct: 586 VCQCDNRGICGTSYPTTSPG--TRYGRPHSGRLGPAAIGL 623


>tr|Q57XQ9|Q57XQ9_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.7.6890 PE=4 SV=1
          Length = 254

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 109 CGTLLDQLNHRLPPLMCPPDE----IINDGIVGFTCGSCNSFHNL 231
           C  L+     +L  L+CP D     +I+ G+V  T G  NSFHNL
Sbjct: 96  CCDLIHTAPDKLLTLLCPEDALFDFVIDKGLVDATLGGSNSFHNL 140


>tr|Q580D1|Q580D1_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.4.1030 PE=4 SV=1
          Length = 275

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
 Frame = -1

Query: 363 YLTRAKSGSALSRWS------ITSLIAAPSKEKFCSEGQSHARHLPKFHL*VMETIAGAT 202
           Y  RAK   +  RW+      +T    +    K+ +   SHA  L   H  V +++ GA+
Sbjct: 100 YEERAKELLSSERWAFFDAHFVTGAAESAGGRKYGNAAVSHATDLKCLHALVAQSLCGAS 159

Query: 201 GEANNSIIYYFIGRAH*RW*SVI*LIKKSSTPFTITSKASNND 73
               +++I+Y +  A       +  IK +S P + + K S+ D
Sbjct: 160 NPIGDAVIHYILLLA-----EKVKTIKNASAPLS-SEKGSSGD 196


>tr|B6NKJ0|B6NKJ0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_127893 PE=4 SV=1
          Length = 619

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 25/103 (24%), Positives = 36/103 (34%)
 Frame = +1

Query: 145 PPLMCPPDEIINDGIVGFTCGSCNSFHNL*MEFRQMASMALTFAAKFLL*GSSNERSYGP 324
           P    P D + N+ + G TC      +N         S  + +  +F             
Sbjct: 419 PSCQEPDDCVTNECLNGATCNDLRDAYN--------CSCPIGWIGRFC----------ET 460

Query: 325 TTQCAPALCSCQIVLICLCENRGLCSPARSTSQPGCLLRFARP 453
            TQCAP       +L C C N   C+ A     PGC + +  P
Sbjct: 461 MTQCAPGEFGSDCLLKCHCLNNETCNGATGHCPPGCAVGWLGP 503


>tr|A6SQX8|A6SQX8_BOTFB Predicted protein OS=Botryotinia fuckeliana
           (strain B05.10) GN=BC1G_15164 PE=4 SV=1
          Length = 83

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 349 KERERTESLVHNFSHCCSLKGEILQRRSKPCSPSAEIPSISYGNYCR 209
           K +ER + L+    HC     E LQ++ K C  + E P + YG++ R
Sbjct: 12  KNKERRKLLIFVVPHCSRAPVEFLQQKLKDCGKTQEYPKL-YGHFKR 57