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NBDC - LSDB Archive
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BP914257
Clone id YMU001_000056_H01
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTGATGATGTAGTCGATAGCTTTACTTTCTGAGGAGACAAGACAAAAGTCTGTGGATCA
TGGCAAGCAAGGTGCCGTATAATAAAATAACTAATCTGGTGCCCTTGAGATAAAACGACA
AATTGAGATACCTCAAGTCATGAAGGTAGGAGGGGAGTACCATAACTAGGAACCCTGATT
TGAAGGACAAGATGTGTCCAAGGAAGGAGAGTGGTACTATACCCCGGAACCCTGATTGTA
GCCCAATCATCGCATAGTCCTCACTCCAAAGCACTGCTTGACAATGTACACACGTGACCA
CACAGTTCCAGTACTTGAGATCCTTCGAGGAGAATACCTTCAAAGATGCCTAAGTTATGT
CACCTTTCTGATAAGCATTATATGTCACCCCCAGAGCTTGCAGAATCTTCATCATCACTC
CCTGATCCACTGCTGCTGCTACTCCCAGTCCCACTATCACTACTTCCGCTGCTACTTCCG
CT
■■Homology search results ■■ -
sp_hit_id Q50368
Definition sp|Q50368|P33_MYCPE Lipoprotein p33 OS=Mycoplasma penetrans
Align length 65
Score (bit) 31.6
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914257|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_H01.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q50368|P33_MYCPE Lipoprotein p33 OS=Mycoplasma penetrans GN=M...    32   2.0  
sp|Q6CX91|SET5_KLULA Potential protein lysine methyltransferase ...    31   3.4  
sp|Q9DGI0|FTE46_BOTJA Antihemorragic factor BJ46a OS=Bothrops ja...    30   4.4  
sp|Q3TIT8|SPX3_MOUSE Sugar phosphate exchanger 3 OS=Mus musculus...    29   9.8  
sp|Q83QD0|SDAC_SHIFL Serine transporter OS=Shigella flexneri GN=...    29   9.8  
sp|P0AAD6|SDAC_ECOLI Serine transporter OS=Escherichia coli (str...    29   9.8  
sp|P0AAD7|SDAC_ECO57 Serine transporter OS=Escherichia coli O157...    29   9.8  
sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protei...    29   9.8  

>sp|Q50368|P33_MYCPE Lipoprotein p33 OS=Mycoplasma penetrans
           GN=MYPE6800 PE=3 SV=2
          Length = 376

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 25/65 (38%), Positives = 33/65 (50%)
 Frame = -2

Query: 427 DQGVMMKILQALGVTYNAYQKGDIT*ASLKVFSSKDLKYWNCVVTCVHCQAVLWSEDYAM 248
           D+G +MK+L+ALG T    Q GD T       S+  L  +NC  T V    V  SED   
Sbjct: 288 DKGEVMKVLKALGYT----QTGDETKLDNDKVSN-SLGLYNCEFTAVSATPVEGSEDKFT 342

Query: 247 IGLQS 233
           I L++
Sbjct: 343 IKLKA 347


>sp|Q6CX91|SET5_KLULA Potential protein lysine methyltransferase
           SET5 OS=Kluyveromyces lactis GN=SET5 PE=3 SV=1
          Length = 492

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 242 PNHRIVLTPKHCLTMYTRDHTVPVLEILRGEYLQRCLSYVTFLISIICHPQSLQNLHHHS 421
           PN R  L PKH + +Y R       +I +GE L+  L+YV  L  +    + L+ +++  
Sbjct: 353 PNVRYELEPKHGIKLYARK------DIKKGEQLR--LTYVNPLHGVTLRRRELR-VNYGF 403

Query: 422 LIHC--CC 439
           L HC  CC
Sbjct: 404 LCHCPRCC 411


>sp|Q9DGI0|FTE46_BOTJA Antihemorragic factor BJ46a OS=Bothrops
           jararaca PE=1 SV=1
          Length = 341

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 296 DHTVPVLEILRGEY-LQRCLSYVTF-LISIICHPQSLQNLHHH 418
           DH   VLEI RG++  +    YV F ++ + C  Q L + HHH
Sbjct: 174 DHVYEVLEISRGQHKYEPEAYYVEFAIVEVNCTAQELHDDHHH 216


>sp|Q3TIT8|SPX3_MOUSE Sugar phosphate exchanger 3 OS=Mus musculus
           GN=Slc37a3 PE=2 SV=1
          Length = 494

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
 Frame = -2

Query: 349 ASLKVFSSKDL---KYW--NCVVTCVHCQAVLWSEDYAMIGLQSG--FRGIVPLSFLGHI 191
           AS K FS+  +   K W  N   T +   A +WS ++     +    F G +   FL   
Sbjct: 36  ASRKTFSNVKVSISKQWTPNAFNTSLDLPAEIWSSNHLFPSTEEATLFLGTLDTVFL--- 92

Query: 190 LSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLLAMIH 53
            S+  G  +  +     +LR++ LSF +  +  V+ ++GTL   +H
Sbjct: 93  FSYAVGLFISGIIGDRLNLRWV-LSFGMCSSAFVVFVFGTLTEWLH 137


>sp|Q83QD0|SDAC_SHIFL Serine transporter OS=Shigella flexneri
           GN=sdaC PE=3 SV=1
          Length = 429

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = -2

Query: 208 SFLGHILSFKSGFLVMVLPSY--------LHDLRYLNLSFYLKGTRLVILLYGTLLAMIH 53
           SFLGH L  + GF  MV+ S         ++ L  +   F L  T +V  L  ++L MI 
Sbjct: 316 SFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIE 375

Query: 52  RL 47
            L
Sbjct: 376 TL 377


>sp|P0AAD6|SDAC_ECOLI Serine transporter OS=Escherichia coli (strain
           K12) GN=sdaC PE=1 SV=1
          Length = 429

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = -2

Query: 208 SFLGHILSFKSGFLVMVLPSY--------LHDLRYLNLSFYLKGTRLVILLYGTLLAMIH 53
           SFLGH L  + GF  MV+ S         ++ L  +   F L  T +V  L  ++L MI 
Sbjct: 316 SFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIE 375

Query: 52  RL 47
            L
Sbjct: 376 TL 377


>sp|P0AAD7|SDAC_ECO57 Serine transporter OS=Escherichia coli O157:H7
           GN=sdaC PE=2 SV=1
          Length = 429

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = -2

Query: 208 SFLGHILSFKSGFLVMVLPSY--------LHDLRYLNLSFYLKGTRLVILLYGTLLAMIH 53
           SFLGH L  + GF  MV+ S         ++ L  +   F L  T +V  L  ++L MI 
Sbjct: 316 SFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIE 375

Query: 52  RL 47
            L
Sbjct: 376 TL 377


>sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protein
           At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1
          Length = 745

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 404 NLHHHSLIHCCCYSQS 451
           NLHHH L H  CYSQ+
Sbjct: 80  NLHHHMLSHPYCYSQN 95
tr_hit_id A8NY66
Definition tr|A8NY66|A8NY66_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 58
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914257|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_H01.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NY66|A8NY66_COPC7 Putative uncharacterized protein OS=Copri...    35   2.4  
tr|Q1WNV4|Q1WNV4_9SALA NADH-ubiquinone oxidoreductase chain 2 OS...    33   5.4  
tr|Q1R110|Q1R110_CHRSD Alpha,alpha-trehalose-phosphate synthase ...    33   5.4  
tr|B1KZB2|B1KZB2_CLOBM Putative membrane protein OS=Clostridium ...    33   5.4  
tr|Q1WNU9|Q1WNU9_9SALA NADH-ubiquinone oxidoreductase chain 2 OS...    33   7.0  
tr|A7GCJ4|A7GCJ4_CLOBL Putative membrane protein OS=Clostridium ...    33   9.2  
tr|A7FT41|A7FT41_CLOB1 Putative membrane protein OS=Clostridium ...    33   9.2  
tr|A5I0Z7|A5I0Z7_CLOBH Putative membrane protein OS=Clostridium ...    33   9.2  
tr|B1Q7S2|B1Q7S2_CLOBO Putative membrane protein OS=Clostridium ...    33   9.2  
tr|A5E5H2|A5E5H2_LODEL Putative uncharacterized protein OS=Lodde...    33   9.2  

>tr|A8NY66|A8NY66_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_01267 PE=4 SV=1
          Length = 634

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 299 HTVPVLEILRGEYLQRCLS--YVTFLISIICHPQSLQNLHHHSLIHCCCYSQSHYHYF 466
           + V  L  L GEY QRC+S    T  ++     Q ++ + H S++    +S+S  HYF
Sbjct: 142 YDVLTLSFLAGEYSQRCVSRRVSTSYLTPNAEVQIMRGIQHPSIVKLYSFSESPEHYF 199


>tr|Q1WNV4|Q1WNV4_9SALA NADH-ubiquinone oxidoreductase chain 2
           OS=Plethodon electromorphus GN=ND2 PE=3 SV=1
          Length = 346

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = -2

Query: 238 QSGFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 65
           QS  R I+  S + H+     G++++V+P YL  L  LNL  YL  T  + L+  TLL
Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVVP-YLPSLTLLNLMMYLLMTSSIFLMMMTLL 223


>tr|Q1R110|Q1R110_CHRSD Alpha,alpha-trehalose-phosphate synthase
           (UDP-forming) OS=Chromohalobacter salexigens (strain DSM
           3043 / ATCC BAA-138 / NCIMB 13768) GN=Csal_0234 PE=4
           SV=1
          Length = 458

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
 Frame = -2

Query: 343 LKVFSSKDLKYWNCVVTCVHCQAVLWSEDYAM--IGLQSGFRGI-VPLSFLGHILSFKSG 173
           +K +S  + ++   +VT V    ++W  DY +  +G +   RGI  PL F  HI  F S 
Sbjct: 104 VKAYSRVNARFAEALVTLVQGDELIWVHDYHLLPLGKELRERGIRQPLGFFLHI-PFPSF 162

Query: 172 FLVMVLPSY---LHDLRYLNL 119
            L+  LP Y   L DL + +L
Sbjct: 163 DLLRALPCYRELLEDLLHYDL 183


>tr|B1KZB2|B1KZB2_CLOBM Putative membrane protein OS=Clostridium
           botulinum (strain Loch Maree / Type A3) GN=CLK_0591 PE=4
           SV=1
          Length = 264

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
 Frame = -2

Query: 364 GDIT*ASLKVFSSKDLKYWNCVVT---CVHCQAVLWSEDYAMIGLQSGFRGIVPLSFLGH 194
           G IT  S+K F S  + +++  +      H +AVL +E   MI        ++    LG 
Sbjct: 83  GLITSFSIKKFISDFIAFFSSFIDNALSFHERAVLSTEIQGMISKMIPVSKLLFWYILGI 142

Query: 193 ILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYG--TLLAMIHRLLSCLLRK*S 20
           +L +    L+M +   L   + +    YLK + + +++Y   T+LA+I   LS +L    
Sbjct: 143 VLFYGLTMLIMYVIVTLIMKKQIKFESYLKVSLISLVIYSTFTVLAVIVAFLSFILSMFV 202

Query: 19  YRLHH 5
           Y L H
Sbjct: 203 YSLAH 207


>tr|Q1WNU9|Q1WNU9_9SALA NADH-ubiquinone oxidoreductase chain 2
           OS=Plethodon richmondi GN=ND2 PE=3 SV=1
          Length = 346

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = -2

Query: 238 QSGFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 65
           QS  R I+  S + H+     G++++V+P YL  L  LNL  YL  T  + L+  TLL
Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVVP-YLPSLTLLNLLVYLMMTSSIFLMMMTLL 223


>tr|A7GCJ4|A7GCJ4_CLOBL Putative membrane protein OS=Clostridium
           botulinum (strain Langeland / NCTC 10281 / Type F)
           GN=CLI_1238 PE=4 SV=1
          Length = 264

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
 Frame = -2

Query: 364 GDIT*ASLKVFSSKDLKYWNCVVT---CVHCQAVLWSEDYAMIGLQSGFRGIVPLSFLGH 194
           G IT  S+K F S  + +++  +      H +AVL +E   MI        ++    LG 
Sbjct: 83  GLITSFSIKKFISDFIAFFSSFIDNALSFHERAVLSTEIQGMISKMIPVSKLLFWYILGI 142

Query: 193 ILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYG--TLLAMIHRLLSCLLRK*S 20
           +L +    L+M +   L   + +    YLK + + +++Y   T+LA+I   LS +L    
Sbjct: 143 VLFYGLIILIMYVIVTLIMKKQIKFESYLKVSLISLVIYSTFTVLAVIVAFLSFILSMLI 202

Query: 19  YRLHH 5
           Y L H
Sbjct: 203 YSLAH 207


>tr|A7FT41|A7FT41_CLOB1 Putative membrane protein OS=Clostridium
           botulinum (strain ATCC 19397 / Type A) GN=CLB_1188 PE=4
           SV=1
          Length = 264

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
 Frame = -2

Query: 364 GDIT*ASLKVFSSKDLKYWNCVVT---CVHCQAVLWSEDYAMIGLQSGFRGIVPLSFLGH 194
           G IT  S+K F S  + +++  +      H +AVL +E   MI        ++    LG 
Sbjct: 83  GLITSFSIKKFISDFIAFFSSFIDNALSFHERAVLSTEIQGMISKMIPVSKLLFWYILGI 142

Query: 193 ILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYG--TLLAMIHRLLSCLLRK*S 20
           +L +    L+M +   L   + +    YLK + + +++Y   T+LA+I   LS +L    
Sbjct: 143 VLFYGLIILIMYVIVTLIMKKQIKFESYLKVSLISLVIYSNFTVLAVIVAFLSFILSMLI 202

Query: 19  YRLHH 5
           Y L H
Sbjct: 203 YSLAH 207


>tr|A5I0Z7|A5I0Z7_CLOBH Putative membrane protein OS=Clostridium
           botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type
           A) GN=CBO1156 PE=4 SV=1
          Length = 264

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
 Frame = -2

Query: 364 GDIT*ASLKVFSSKDLKYWNCVVT---CVHCQAVLWSEDYAMIGLQSGFRGIVPLSFLGH 194
           G IT  S+K F S  + +++  +      H +AVL +E   MI        ++    LG 
Sbjct: 83  GLITSFSIKKFISDFIAFFSSFIDNALSFHERAVLSTEIQGMISKMIPVSKLLFWYILGI 142

Query: 193 ILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYG--TLLAMIHRLLSCLLRK*S 20
           +L +    L+M +   L   + +    YLK + + +++Y   T+LA+I   LS +L    
Sbjct: 143 VLFYGLIILIMYVIVTLIMKKQIKFESYLKVSLISLVIYSNFTVLAVIVAFLSFILSMLI 202

Query: 19  YRLHH 5
           Y L H
Sbjct: 203 YSLAH 207


>tr|B1Q7S2|B1Q7S2_CLOBO Putative membrane protein OS=Clostridium
           botulinum NCTC 2916 GN=CBN_1228 PE=4 SV=1
          Length = 264

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
 Frame = -2

Query: 364 GDIT*ASLKVFSSKDLKYWNCVVT---CVHCQAVLWSEDYAMIGLQSGFRGIVPLSFLGH 194
           G IT  S+K F S  + +++  +      H +AVL +E   MI        ++    LG 
Sbjct: 83  GLITSFSIKKFISDFIAFFSSFIDNALSFHERAVLSTEIQGMISKMIPVSKLLFWYILGI 142

Query: 193 ILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYG--TLLAMIHRLLSCLLRK*S 20
           +L +    L+M +   L   + +    YLK + + +++Y   T+LA+I   LS +L    
Sbjct: 143 VLFYGLIILIMYVIVTLIMKKQIKFESYLKVSLISLVIYSTFTVLAVIVAFLSFILSMLI 202

Query: 19  YRLHH 5
           Y L H
Sbjct: 203 YSLAH 207


>tr|A5E5H2|A5E5H2_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_04861 PE=4 SV=1
          Length = 912

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 313 YWNCVVTCVHCQAVLWSEDYAMIGLQSGFRGIVPLSFLGHILSFK-SGFLVMVLP 152
           +W  + TC     V+    YA+IG  S   GI  L+    +L F+ +G +  VLP
Sbjct: 570 HWESLATCTEKSCVVSPSSYAVIGAASFMTGITKLTMTVVVLMFEITGAVTYVLP 624