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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914233
Clone id YMU001_000056_E12
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCGATTGATGGCTCCAGTCAAGCCCTGCCTGTAAGATATTCTTCTCATCAAAGGGACTC
AACAAAGTCTAGTTCCTCAAAATGACATTCCTCATTTTGGAACTCTCAAAAAGTTTGGAG
AACTTTGTTTTGGGAGGTCGGCCCGTTTTGGATGGATGTCGCAGACAGTGGCTGAGTCGA
AGGATTTGACCGAAGTCGAGTTGTCTGCTCCAAATTTCATTGGTTGCCTGAACTCTGACC
ATGAAGCGCAAGGGTTCCGGCTCGAATATGGTAGGATTTTCTCGGCTGCCCTGCCCCTTC
TTTTTGGTCTTTTACTTCCATTTGATTCGATATACTTCCTGTATTTTAAGCTTCCCGTAG
CATATGCATCTGCGGGGATGAAAAGAGGGGTTCAACCCATGATATAGAGTTTCTGTTGTA
AAATTTGAAAAAAAGCCCCTTTGTAAAAGAGCCCACCATTCCGAATTTTTTTGTCTCTGA
TGGTGGAGATTGAACAAGTTCAAGTTCTTGCTTTAAATATTGAAGTTAGGTTGTGAGGAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P34522
Definition sp|P34522|HM26_CAEEL Homeobox protein ceh-26 OS=Caenorhabditis elegans
Align length 82
Score (bit) 33.9
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914233|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_E12.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34522|HM26_CAEEL Homeobox protein ceh-26 OS=Caenorhabditis e...    34   0.52 
sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subun...    33   0.89 
sp|Q2NV94|DXS_SODGM 1-deoxy-D-xylulose-5-phosphate synthase OS=S...    32   2.5  
sp|Q03J81|GATA_STRTD Glutamyl-tRNA(Gln) amidotransferase subunit...    31   3.3  
sp|Q5M312|GATA_STRT2 Glutamyl-tRNA(Gln) amidotransferase subunit...    31   3.3  
sp|Q5LYE9|GATA_STRT1 Glutamyl-tRNA(Gln) amidotransferase subunit...    31   3.3  
sp|Q90YL3|MED26_DANRE Mediator of RNA polymerase II transcriptio...    31   4.4  
sp|A4VT83|GATA_STRSY Glutamyl-tRNA(Gln) amidotransferase subunit...    30   5.7  
sp|A4VZG5|GATA_STRS2 Glutamyl-tRNA(Gln) amidotransferase subunit...    30   5.7  
sp|Q6S6S2|EXON_EHV1V Alkaline exonuclease OS=Equine herpesvirus ...    30   5.7  
sp|P28919|EXON_EHV1B Alkaline exonuclease OS=Equine herpesvirus ...    30   5.7  
sp|Q57706|Y258_METJA Uncharacterized protein MJ0258 OS=Methanoca...    30   5.7  
sp|Q7S6P8|BFR2_NEUCR Protein bfr-2 OS=Neurospora crassa GN=bfr-2...    30   7.5  
sp|Q56303|FOR_THELI Tungsten-containing formaldehyde ferredoxin ...    30   9.7  
sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic sub...    30   9.8  

>sp|P34522|HM26_CAEEL Homeobox protein ceh-26 OS=Caenorhabditis
           elegans GN=ceh-26 PE=2 SV=1
          Length = 586

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = -2

Query: 345 NTGSISNQMEVKD--QKEGAGQPRKSYHIRAGTLALHGQSSGNQ*NLEQT---TRLRSNP 181
           +T + SN+ +VK   Q+  AG+PR +Y   + +++ +  SS +  N   T   +   S  
Sbjct: 43  STPNSSNRFKVKRHRQRVDAGEPRNTYQGASTSVSSNSSSSSSTSNTNSTPSSSSTSSKK 102

Query: 180 STQPLSATSIQNGPTSQNKVLQ 115
           ST+ ++ T        Q KV+Q
Sbjct: 103 STEGMTETETMTASIEQEKVIQ 124


>sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subunit
           10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1
          Length = 1442

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -2

Query: 339 GSISNQMEVKDQKEGAGQPRKSYHIRAGTLALHGQSSGNQ*NLEQTTRLRSNPSTQPLSA 160
           GS S+   V D   G G      ++ + TL+    SS +  N   +  L+  PSTQPLS+
Sbjct: 13  GSTSSTASVNDSGGGGG----GGNVTSPTLSSSSASSISNSNSSSSNNLK--PSTQPLSS 66

Query: 159 TSIQNGPT 136
           +S  N PT
Sbjct: 67  SSTLNTPT 74


>sp|Q2NV94|DXS_SODGM 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Sodalis glossinidius (strain morsitans) GN=dxs PE=3
           SV=1
          Length = 620

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 72  VPQNDIPHFGTLKKFGELCFGRSARFG-WMSQTVAESKDLTEV 197
           VP+ D PH GTL K G+ C   SA FG W+  T A+   L  +
Sbjct: 301 VPKFD-PHMGTLPKSGDGCPTYSAIFGDWLCATAADDDKLMAI 342


>sp|Q03J81|GATA_STRTD Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Streptococcus thermophilus (strain ATCC BAA-491 /
           LMD-9) GN=gatA PE=3 SV=1
          Length = 488

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 90  PHFGTLKKFGELCFGRSA-RFGWMSQTVAESKDLTEV 197
           P +GT+ +FG + FG S  + G  SQTV E+  L  V
Sbjct: 191 PTYGTVSRFGLIAFGSSLDQIGTFSQTVKENAQLLNV 227


>sp|Q5M312|GATA_STRT2 Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG
           18311) GN=gatA PE=3 SV=1
          Length = 488

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 90  PHFGTLKKFGELCFGRSA-RFGWMSQTVAESKDLTEV 197
           P +GT+ +FG + FG S  + G  SQTV E+  L  V
Sbjct: 191 PTYGTVSRFGLIAFGSSLDQIGTFSQTVKENAQLLNV 227


>sp|Q5LYE9|GATA_STRT1 Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Streptococcus thermophilus (strain CNRZ 1066) GN=gatA
           PE=3 SV=1
          Length = 488

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 90  PHFGTLKKFGELCFGRSA-RFGWMSQTVAESKDLTEV 197
           P +GT+ +FG + FG S  + G  SQTV E+  L  V
Sbjct: 191 PTYGTVSRFGLIAFGSSLDQIGTFSQTVKENAQLLNV 227


>sp|Q90YL3|MED26_DANRE Mediator of RNA polymerase II transcription
           subunit 26 OS=Danio rerio GN=med26 PE=2 SV=2
          Length = 589

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = -2

Query: 321 MEVKDQKEGA-----GQPRKSYHIRAGTLALHGQSSGNQ*NLEQTTRLRSNPSTQPLSAT 157
           +E K ++EGA     G+ RK Y  R  T+ L GQSS +          R+ P  +    T
Sbjct: 363 LETKAEREGASSNSDGKKRKKYRPRDYTVNLQGQSSED----------RTKPRLKERRLT 412

Query: 156 SIQNGPTSQNKVLQTF*EFQNEECH 82
              +  T Q K L      Q EECH
Sbjct: 413 F--DPVTGQIKPLTPKESHQEEECH 435


>sp|A4VT83|GATA_STRSY Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Streptococcus suis (strain 05ZYH33) GN=gatA PE=3 SV=1
          Length = 488

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 90  PHFGTLKKFGELCFGRSA-RFGWMSQTVAESKDLTEV 197
           P +GT+ +FG + FG S  + G  SQTV E+  L  V
Sbjct: 191 PTYGTVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNV 227


>sp|A4VZG5|GATA_STRS2 Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Streptococcus suis (strain 98HAH33) GN=gatA PE=3 SV=1
          Length = 488

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 90  PHFGTLKKFGELCFGRSA-RFGWMSQTVAESKDLTEV 197
           P +GT+ +FG + FG S  + G  SQTV E+  L  V
Sbjct: 191 PTYGTVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNV 227


>sp|Q6S6S2|EXON_EHV1V Alkaline exonuclease OS=Equine herpesvirus 1
           (strain V592) GN=50 PE=3 SV=1
          Length = 565

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 473 QKNSEWWALLQRGFFSNFTTETLYHGLNPSFHPRRC 366
           Q  S+ WALL+RG  +  T +  +  L P +HP+ C
Sbjct: 174 QSESQLWALLRRGLATASTMK--WGALGPQYHPQWC 207
tr_hit_id A6S6A1
Definition tr|A6S6A1|A6S6A1_BOTFB Putative uncharacterized protein OS=Botryotinia fuckeliana (strain B05.10)
Align length 91
Score (bit) 36.6
E-value 0.86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914233|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_E12.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6S6A1|A6S6A1_BOTFB Putative uncharacterized protein OS=Botry...    37   0.86 
tr|Q6BCB0|Q6BCB0_TRYCR Cleavage polyadenylation specificity fact...    36   1.5  
tr|B0W9N7|B0W9N7_CULQU Dnajc8 protein OS=Culex quinquefasciatus ...    34   4.3  
tr|B2GDS6|B2GDS6_LACF3 Glutamyl-tRNA amidotransferase subunit A ...    34   5.5  
tr|O80614|O80614_ARATH Putative uncharacterized protein At2g0300...    33   9.5  
tr|A6SM61|A6SM61_BOTFB Putative uncharacterized protein OS=Botry...    33   9.5  

>tr|A6S6A1|A6S6A1_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_07690
           PE=4 SV=1
          Length = 514

 Score = 36.6 bits (83), Expect = 0.86
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = -1

Query: 373 ADAYATGSLKYRKYIESNGSKRPKRRGRAAE--KILP-YSSRNPCASWSEFRQPMKFGAD 203
           +DA +T S KYRK + +N      RR   A   + LP  SSR+  +   + +   KFG+ 
Sbjct: 43  SDANSTTSSKYRKQLVANARPLLLRRRDTANTTRSLPNLSSRSKSSLQDKDKDKDKFGSS 102

Query: 202 NSTSVKSFDSATVCDIHPKRADLPKQSSPNF 110
           +  S  S       ++  K++  P  SSPNF
Sbjct: 103 SDDSHSSIPVPPGRNLRLKKSQPPGSSSPNF 133


>tr|Q6BCB0|Q6BCB0_TRYCR Cleavage polyadenylation specificity factor
           CPSF160 (Cleavage and polyadenylation specificity
           factor, putative) OS=Trypanosoma cruzi GN=CPSF160 PE=4
           SV=1
          Length = 1436

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 247 ASWSEFRQPMKFGADNSTSVKSFDSATVCDIHPKRADLPKQSSP 116
           A W E R+ + F  D + ++K  +S  VC   P+ A+LP+ S+P
Sbjct: 759 ALWPEQRRVVIFFTDGTMTIKEMESCEVCATFPQFANLPQYSTP 802


>tr|B0W9N7|B0W9N7_CULQU Dnajc8 protein OS=Culex quinquefasciatus
           GN=CpipJ_CPIJ003642 PE=4 SV=1
          Length = 266

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 283 EKILPYSSRNPCASWSEFRQPMKFGADNSTSVKSFDSATVCDIHPKRADLPKQSSPN 113
           +K    S +N   SW  F+Q     + +S+S  SF+SA +    PK+A   K +S N
Sbjct: 201 QKNFEESRQNRVNSWQTFQQAATSASSSSSSSNSFESAAIPAAKPKKAKKTKYTSFN 257


>tr|B2GDS6|B2GDS6_LACF3 Glutamyl-tRNA amidotransferase subunit A
           OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251)
           GN=LAF_1472 PE=4 SV=1
          Length = 487

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
 Frame = +3

Query: 90  PHFGTLKKFGELCFGRSA-RFGWMSQTVAES------------KDLTEVELSAPNFIGCL 230
           P +G + ++G + FG S  + GW++Q+V ++            +D+T      P+F   L
Sbjct: 191 PTYGRVSRWGLIAFGSSFDQIGWLTQSVKDNAILMSAIAGKDDRDMTSANQPVPDFAAGL 250

Query: 231 NSDHEAQGFRLEYGR 275
           N   + +G ++   R
Sbjct: 251 NDQADIKGMKIAVPR 265


>tr|O80614|O80614_ARATH Putative uncharacterized protein At2g03000
           OS=Arabidopsis thaliana GN=At2g03000 PE=2 SV=1
          Length = 535

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 31/119 (26%), Positives = 46/119 (38%)
 Frame = -1

Query: 427 QILQQKLYIMG*TPLFIPADAYATGSLKYRKYIESNGSKRPKRRGRAAEKILPYSSRNPC 248
           ++LQ  +   G +P+          S+  R+ + S+ S R  +   +  +I+P SSRN  
Sbjct: 100 RVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVI 159

Query: 247 ASWSEFRQPMKFGADNSTSVKSFDSATVCDIHPKRADLPKQSSPNFLRVPK*GMSF*GT 71
            S  E            TS   F S    +  P     P   S N  RV +  MS  GT
Sbjct: 160 TSSEEVANTF-----TQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGT 213


>tr|A6SM61|A6SM61_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_13940
           PE=4 SV=1
          Length = 967

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
 Frame = -1

Query: 352 SLKYRKYIESNGSKRPKRR------------GRAAEKILPYSSRNPCASWSEFRQPMKFG 209
           S+  R   +S+GS    R+            G+A  K++   S+NP A+ + F +P+   
Sbjct: 516 SVHQRSPPDSDGSDEASRKRRKVHANKFTPTGQAPLKMINQGSKNPKATGACFYKPIFVR 575

Query: 208 ADNSTSVKSFDSATVCDIHPKRADLPKQSSP 116
               TS  S D +   DI P R DLP  +SP
Sbjct: 576 YPQHTSEVSGDES---DISPNRYDLPGFASP 603