NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914209
Clone id YMU001_000056_C10
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATGATCAACCCTGATAGTCGCGACGATAGCCATTTGAAAGAACATGCAAGTGCAAATGA
ACGATCAAAAGCTGAAGGGGCTGGATCCAAAGAAGGTTCTTCTGGCTCTAAGAAGCCTGG
GAGCAGGTATGTTCCTTCTTTCATCCCCCCTGGATTGGCTGCAGTTGTTAACAGTGCCAA
GGAACCTGAGAGAAAGAAAGAGGAGGAGAAGCGCAAAGAAAGAGATCGAACGAAATTACG
TAACATTGATCACTTCATGGAAGAATTGAAGATGGAACAAGAGATGAGAGAAAAAAGGAG
CCTGGATCGAGAATATCGAAGCCGTGAAAGCGGGCAAAAAGGAAATTTAAGTCCTCCCAC
TCGATTTGATGAGTTGCCAGAAGATCTCGATGGGAAACTGCCAGGATCGTTTGATGATGG
AGATCCTCAGACCACAAATTTATATGTTGGCAA
■■Homology search results ■■ -
sp_hit_id O15042
Definition sp|O15042|SR140_HUMAN U2-associated protein SR140 OS=Homo sapiens
Align length 77
Score (bit) 53.1
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914209|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_C10.
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O15042|SR140_HUMAN U2-associated protein SR140 OS=Homo sapien...    53   5e-07
sp|Q6NV83|SR140_MOUSE U2-associated protein SR140 OS=Mus musculu...    53   7e-07
sp|Q5R7X2|SR140_PONAB U2-associated protein SR140 OS=Pongo abeli...    50   4e-06
sp|Q5BIS6|NR1H2_BOVIN Oxysterols receptor LXR-beta OS=Bos taurus...    32   1.7  
sp|P69849|NOMO3_HUMAN Nodal modulator 3 OS=Homo sapiens GN=NOMO3...    30   6.3  
sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter sp...    29   8.2  

>sp|O15042|SR140_HUMAN U2-associated protein SR140 OS=Homo sapiens
           GN=SR140 PE=1 SV=2
          Length = 1029

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
 Frame = +2

Query: 242 NIDHFMEELKMEQEMREKRSLDREYRSR-------ESGQKGNLSPPTRFDELPEDLDGKL 400
           N++ F EELK  QE R++R   +   SR         GQ+ ++  P+R +     LD   
Sbjct: 203 NLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDYA 262

Query: 401 PGSFDDGDPQTTNLYVG 451
           PGS D GDP TTNLY+G
Sbjct: 263 PGSHDVGDPSTTNLYLG 279


>sp|Q6NV83|SR140_MOUSE U2-associated protein SR140 OS=Mus musculus
           GN=Sr140 PE=2 SV=2
          Length = 1029

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
 Frame = +2

Query: 242 NIDHFMEELKMEQEMREKRSLDREYRSR-------ESGQKGNLSPPTRFDELPEDLDGKL 400
           N++ F EELK  QE R++R   +   SR         GQ+ ++  P+R +     LD   
Sbjct: 203 NLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDVPSRRNRSSGVLDDYA 262

Query: 401 PGSFDDGDPQTTNLYVG 451
           PGS D GDP TTNLY+G
Sbjct: 263 PGSHDVGDPSTTNLYLG 279


>sp|Q5R7X2|SR140_PONAB U2-associated protein SR140 OS=Pongo abelii
           GN=SR140 PE=2 SV=1
          Length = 1028

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
 Frame = +2

Query: 242 NIDHFMEELKMEQEMREKRSLDREYRSR-------ESGQKGNLSPPTRFDELPEDLDGKL 400
           N++ F EELK  QE R++R   +   SR         GQ+ ++  P+R +     LD   
Sbjct: 203 NLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDAPSRRNR-SSVLDDYA 261

Query: 401 PGSFDDGDPQTTNLYVG 451
           PGS D GDP TTNLY+G
Sbjct: 262 PGSHDVGDPSTTNLYLG 278


>sp|Q5BIS6|NR1H2_BOVIN Oxysterols receptor LXR-beta OS=Bos taurus
           GN=NR1H2 PE=2 SV=2
          Length = 455

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 168 TTAANPGGMKEGTYLLPGFLEPEEPSLDPAPSA 70
           T +++PGG ++G    PG  +P+ PS D A SA
Sbjct: 20  TPSSSPGGKEDGPEPCPGGADPDVPSTDGADSA 52


>sp|P69849|NOMO3_HUMAN Nodal modulator 3 OS=Homo sapiens GN=NOMO3
           PE=2 SV=1
          Length = 1222

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 257 MEELKMEQEMRE--KRSLDREYRSRESGQKGNLSPPTRFDELPEDLDGKLPGSFD 415
           ++EL+ EQ++ E   R  +RE   +E G++    PP +  E+ ++L G  P S+D
Sbjct: 702 VQELRREQQLAEIEARRQEREKNGKEEGEERMTKPPVQ--EMVDELQG--PFSYD 752


>sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter sp.
           (strain ADP1) GN=uvrB PE=3 SV=1
          Length = 675

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 263 ELKMEQEMREKRSLDREYRSRESGQKGNLSPPTRFDELPED 385
           +L+M Q++     ++  Y    SG+    +PPT FD +PED
Sbjct: 297 DLEMMQQLGYTNGIEN-YSRHLSGRSPGAAPPTLFDYIPED 336
tr_hit_id A5BQS1
Definition tr|A5BQS1|A5BQS1_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 111
Score (bit) 109.0
E-value 6.0e-23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914209|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_C10.
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BQS1|A5BQS1_VITVI Putative uncharacterized protein OS=Vitis...   109   6e-23
tr|A7P661|A7P661_VITVI Chromosome chr4 scaffold_6, whole genome ...   105   9e-22
tr|Q9C5J3|Q9C5J3_ARATH Putative uncharacterized protein At5g2506...    98   2e-19
tr|A9SYF0|A9SYF0_PHYPA Predicted protein OS=Physcomitrella paten...    93   6e-18
tr|Q6ETK6|Q6ETK6_ORYSJ Putative U2-associated SR140 protein OS=O...    92   1e-17
tr|B8AIW7|B8AIW7_ORYSI Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|A3A3S9|A3A3S9_ORYSJ Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|Q6ETK5|Q6ETK5_ORYSJ RNA recognition motif (RRM)-containing pr...    88   2e-16
tr|A9TAZ0|A9TAZ0_PHYPA Predicted protein OS=Physcomitrella paten...    87   4e-16
tr|Q9LEV9|Q9LEV9_ARATH Putative uncharacterized protein T30N20_7...    76   7e-13
tr|B4DK81|B4DK81_HUMAN cDNA FLJ60621 OS=Homo sapiens PE=2 SV=1         53   7e-06
tr|B5DEC9|B5DEC9_XENTR Putative uncharacterized protein OS=Xenop...    47   4e-04
tr|B0S5J4|B0S5J4_DANRE Novel protein similar to vertebrate U2-as...    47   5e-04
tr|B3RIF0|B3RIF0_TRIAD Putative uncharacterized protein OS=Trich...    45   0.001
tr|Q4S4Z8|Q4S4Z8_TETNG Chromosome 6 SCAF14737, whole genome shot...    45   0.002
tr|A8J7H0|A8J7H0_CHLRE Predicted protein OS=Chlamydomonas reinha...    44   0.003
tr|B6P0I3|B6P0I3_BRAFL Putative uncharacterized protein OS=Branc...    44   0.003
tr|Q16N86|Q16N86_AEDAE Gar2, putative (Fragment) OS=Aedes aegypt...    44   0.005
tr|B0X5E1|B0X5E1_CULQU U2-associated SR140 protein OS=Culex quin...    44   0.005
tr|B0S5J3|B0S5J3_DANRE Novel protein similar to vertebrate U2-as...    43   0.007
tr|Q7Q7V4|Q7Q7V4_ANOGA AGAP005006-PA OS=Anopheles gambiae GN=AGA...    42   0.012
tr|Q9W2N6|Q9W2N6_DROME CG9346 OS=Drosophila melanogaster GN=CG93...    42   0.015
tr|Q7K0X5|Q7K0X5_DROME LD23810p (Fragment) OS=Drosophila melanog...    42   0.015
tr|B4P9J7|B4P9J7_DROYA GE12157 OS=Drosophila yakuba GN=GE12157 P...    42   0.020
tr|B4J8Q1|B4J8Q1_DROGR GH20523 OS=Drosophila grimshawi GN=GH2052...    42   0.020
tr|B4QFK4|B4QFK4_DROSI GD11555 OS=Drosophila simulans GN=GD11555...    41   0.026
tr|B4I7H9|B4I7H9_DROSE GM15794 OS=Drosophila sechellia GN=GM1579...    41   0.026
tr|A7SN57|A7SN57_NEMVE Predicted protein (Fragment) OS=Nematoste...    41   0.026
tr|B4LQ74|B4LQ74_DROVI GJ21992 OS=Drosophila virilis GN=GJ21992 ...    41   0.034
tr|B4KRI3|B4KRI3_DROMO GI21069 OS=Drosophila mojavensis GN=GI210...    40   0.045

>tr|A5BQS1|A5BQS1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_025939 PE=4 SV=1
          Length = 1384

 Score =  109 bits (273), Expect = 6e-23
 Identities = 62/111 (55%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
 Frame = +2

Query: 125 RYVPSFIPPGLAAVVNSAXXXXXXXXXXXXXXXXXXXXXNIDHFMEELKMEQEMREKRSL 304
           RYVPSFIPP LAA                          NIDHFMEELK EQEMRE+R+ 
Sbjct: 204 RYVPSFIPPPLAA---KGXEPDKKKEEEKPKEREKGKSRNIDHFMEELKHEQEMRERRNQ 260

Query: 305 DREYRSRESGQKGNLSPPTRFDELPEDLD--GKLPGSFDDGDPQTTNLYVG 451
           +R+ + R+     + +PP+RFDELP+D D  GKLPGSFDDGDPQTTNLYVG
Sbjct: 261 ERD-QWRDGRHNDSSAPPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVG 310


>tr|A7P661|A7P661_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032794001
           PE=4 SV=1
          Length = 928

 Score =  105 bits (263), Expect = 9e-22
 Identities = 60/111 (54%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
 Frame = +2

Query: 125 RYVPSFIPPGLAAVVNSAXXXXXXXXXXXXXXXXXXXXXNIDHFMEELKMEQEMREKRSL 304
           RYVPSFIPP LAA                          NIDHFMEELK EQEMRE+R+ 
Sbjct: 86  RYVPSFIPPPLAA---KGKEPDKKKEEEKPKEREKGKSRNIDHFMEELKHEQEMRERRNQ 142

Query: 305 DREYRSRESGQKGNLSPPTRFDELPEDLD--GKLPGSFDDGDPQTTNLYVG 451
           +R+ + R+     + + P+RFDELP+D D  GKLPGSFDDGDPQTTNLYVG
Sbjct: 143 ERD-QWRDGRHNDSSALPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVG 192


>tr|Q9C5J3|Q9C5J3_ARATH Putative uncharacterized protein At5g25060
           OS=Arabidopsis thaliana GN=At5g25060 PE=1 SV=1
          Length = 946

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 56/110 (50%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
 Frame = +2

Query: 125 RYVPSFIPPGLAAVVNSAXXXXXXXXXXXXXXXXXXXXXNIDHFMEELKMEQEMREKRSL 304
           RYVPSF+PP LA+                          NID+FMEELK EQEMRE+R+ 
Sbjct: 85  RYVPSFLPPPLAS---KGKEPEKKREEERPREREKGKTRNIDNFMEELKREQEMRERRNQ 141

Query: 305 DREYRSRESGQKGNLSPPTRFDELPEDLD-GKLPGSFDDGDPQTTNLYVG 451
           DR+       ++G+ SP +RFDELP+D D    PGSFDDGDPQTTNLYVG
Sbjct: 142 DRD-------RQGDSSPSSRFDELPDDFDPSGRPGSFDDGDPQTTNLYVG 184


>tr|A9SYF0|A9SYF0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234486 PE=4 SV=1
          Length = 990

 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 56/110 (50%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
 Frame = +2

Query: 128 YVPSFIPPGLAAVVNSAXXXXXXXXXXXXXXXXXXXXXNIDHFMEELKMEQEMREKRSLD 307
           YVPSFIPPGLAA+VN                       NIDHFMEELK EQE R+KR+ +
Sbjct: 76  YVPSFIPPGLAAMVNKEKEPEKRRDEERSKDRDRGKSRNIDHFMEELKREQEARDKRTAE 135

Query: 308 REYR--SRESGQKGNLSPPTRFDELPEDLDGKLPGSFDDGDPQTTNLYVG 451
           RE R   R S   G         +   DLD KL GSFD+GDPQTTNLYVG
Sbjct: 136 RENRRNDRRSLNSGMSDQMMMGPDESGDLDDKL-GSFDEGDPQTTNLYVG 184


>tr|Q6ETK6|Q6ETK6_ORYSJ Putative U2-associated SR140 protein
           OS=Oryza sativa subsp. japonica GN=P0544B02.29-2 PE=4
           SV=1
          Length = 954

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 53/111 (47%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
 Frame = +2

Query: 125 RYVPSFIPPGLAAVVNSAXXXXXXXXXXXXXXXXXXXXXNIDHFMEELKMEQEMREKRSL 304
           RYVPSF+PP      +                        ID FMEELK E+E+R+KR+ 
Sbjct: 80  RYVPSFLPPSFGKEPDKKKEEERPKEKERRKPRV------IDEFMEELKFEKELRQKRNQ 133

Query: 305 DREYRSRESGQKGNLSPPTRFDELPEDLD--GKLPGSFDDGDPQTTNLYVG 451
           +RE + RE       +  +RFDELP++LD  GKLPGSFDDGDPQTTNLYVG
Sbjct: 134 ERE-QWREGRHTDTSASSSRFDELPDELDPIGKLPGSFDDGDPQTTNLYVG 183


>tr|B8AIW7|B8AIW7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06097 PE=4 SV=1
          Length = 997

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 53/111 (47%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
 Frame = +2

Query: 125 RYVPSFIPPGLAAVVNSAXXXXXXXXXXXXXXXXXXXXXNIDHFMEELKMEQEMREKRSL 304
           RYVPSF+PP      +                        ID FMEELK E+E+R+KR+ 
Sbjct: 107 RYVPSFLPPSFGKEPDKKKEEERPKEKERRKPRV------IDEFMEELKFEKELRQKRNQ 160

Query: 305 DREYRSRESGQKGNLSPPTRFDELPEDLD--GKLPGSFDDGDPQTTNLYVG 451
           +RE + RE       +  +RFDELP++LD  GKLPGSFDDGDPQTTNLYVG
Sbjct: 161 ERE-QWREGRHTDTSASSSRFDELPDELDPIGKLPGSFDDGDPQTTNLYVG 210


>tr|A3A3S9|A3A3S9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005451 PE=3 SV=1
          Length = 1379

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 53/111 (47%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
 Frame = +2

Query: 125 RYVPSFIPPGLAAVVNSAXXXXXXXXXXXXXXXXXXXXXNIDHFMEELKMEQEMREKRSL 304
           RYVPSF+PP      +                        ID FMEELK E+E+R+KR+ 
Sbjct: 100 RYVPSFLPPSFGKEPDKKKEEERPKEKERRKPRV------IDEFMEELKFEKELRQKRNQ 153

Query: 305 DREYRSRESGQKGNLSPPTRFDELPEDLD--GKLPGSFDDGDPQTTNLYVG 451
           +RE + RE       +  +RFDELP++LD  GKLPGSFDDGDPQTTNLYVG
Sbjct: 154 ERE-QWREGRHTDTSASSSRFDELPDELDPIGKLPGSFDDGDPQTTNLYVG 203


>tr|Q6ETK5|Q6ETK5_ORYSJ RNA recognition motif (RRM)-containing
           protein-like OS=Oryza sativa subsp. japonica
           GN=P0544B02.29-1 PE=4 SV=1
          Length = 589

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 45/71 (63%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
 Frame = +2

Query: 245 IDHFMEELKMEQEMREKRSLDREYRSRESGQKGNLSPPTRFDELPEDLD--GKLPGSFDD 418
           ID FMEELK E+E+R+KR+ +RE + RE       +  +RFDELP++LD  GKLPGSFDD
Sbjct: 73  IDEFMEELKFEKELRQKRNQERE-QWREGRHTDTSASSSRFDELPDELDPIGKLPGSFDD 131

Query: 419 GDPQTTNLYVG 451
           GDPQTTNLYVG
Sbjct: 132 GDPQTTNLYVG 142


>tr|A9TAZ0|A9TAZ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193248 PE=4 SV=1
          Length = 990

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 54/111 (48%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
 Frame = +2

Query: 125 RYVPSFIPPGLAAVVNSAXXXXXXXXXXXXXXXXXXXXXNIDHFMEELKMEQEMREKRSL 304
           RYVPSFIPPGLAA+VN                       NI HFMEELK EQE R+ R+ 
Sbjct: 86  RYVPSFIPPGLAAMVNRDKDSEKRRDEEQPKDRDRGTSRNIHHFMEELKREQEARDTRTA 145

Query: 305 DREYR--SRESGQKGNLSPPTRFDELPEDLDGKLPGSFDDGDPQTTNLYVG 451
           +RE R   R S   G         +   DLD K  GSFD+GDPQTTNLYVG
Sbjct: 146 ERENRRNDRRSQSSGIADQMIMGLDDAGDLDDKF-GSFDEGDPQTTNLYVG 195


>tr|Q9LEV9|Q9LEV9_ARATH Putative uncharacterized protein T30N20_70
           OS=Arabidopsis thaliana GN=T30N20_70 PE=4 SV=1
          Length = 957

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
 Frame = +2

Query: 242 NIDHFMEELKMEQEMREKRSLDREYRSRESGQKGNLSPPTRFDELPE--DLDGKLPGSFD 415
           NIDHF+EELK EQE+RE+R+ DRE  SR+       S  +RFDELP+  D  G+L GS D
Sbjct: 109 NIDHFVEELKREQEIRERRNQDRE-NSRDHNSDNTSS--SRFDELPDYFDPSGRL-GSLD 164

Query: 416 DGDPQTTNLYV 448
           DGDPQTTNLYV
Sbjct: 165 DGDPQTTNLYV 175