BP914195
Clone id YMU001_000056_B05
Library
Length 633
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTTTTTTTTTTTTGTATCAACAAAACTAGCCATTCATAACATTGCTTGAGAAATG
TTTAGAGCTGCAAGCACTGCCTCTTGCCATGCATTAGAGTCATCTAGGTAACATCTTGAA
GCAACTCATAAAGTTAATATGCCAACAAGCATGTCTAGTAGAAGTGTCTAATATTCAACT
AAAAGTTAGCTTCATATGAATAGAACAACTTCCATGGACTTGTCTCTCCATACATGTGGA
AGCCACTTCCAAGGCTCCATCAGCAGGGAAATCTTCACATGAGCGCAGCCCACGTTTCTT
CCTAGATCAAGCTTCCTTGGTTTGACTTGTATTCACTGCTACACCCCTTGCTTGTTGCAA
TGCAATTCAAAAAACTATGCACCACAGCATCTGCTTCGAGGCAGGAAATAAAACACCTCC
TTTGCCAGATAATTCCATTATGAATTGTCGTCTGGCAGGTGGCTGCACTTATATCTCATG
CCAGCCTAAGAGATACTACATACATAAAGAAGCTCCACAACACATAACATACAGATTAGC
GCATGTTCTTGGGGAACCTAAGCTCTACCTACGAAACTGAAACATTGTCTCTCATAGCAA
CTATGTCAACAACATTTGCACTATCCTAACCAC
■■Homology search results ■■ -
sp_hit_id O88737
Definition sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus
Align length 69
Score (bit) 33.5
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914195|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_B05.
(615 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 ... 33 0.89
sp|O88778|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE... 32 2.0

>sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 SV=3
Length = 3942

Score = 33.5 bits (75), Expect = 0.89
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2

Query: 329 LACCNAIQKTMHHSICFEAGNKTPPLPDNSIMNCRLAGGCTYISCQPKRYYIHKEAPQHI 508
LACC+ + K S C + P PD S+ + L G + P+ E P+ +
Sbjct: 1903 LACCDMVYKFPFGSSCTGTFHPAPSAPDKSVTDTALPGQSSGPFYSPR----DPEPPEPL 1958

Query: 509 TYRLAHVLG 535
T+R V+G
Sbjct: 1959 TFRTQGVVG 1967


>sp|O88778|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE=1
SV=3
Length = 3938

Score = 32.3 bits (72), Expect = 2.0
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2

Query: 329 LACCNAIQKTMHHSICFEAGNKTPPLPDNSIMNCRLAGGCTYISCQPKRYYIHKEAPQHI 508
LACC+ K S C + P PD S+ + L G + P+ E P+ +
Sbjct: 1891 LACCDMAYKFPFGSSCTGTFHPAPSAPDKSVTDAALPGQSSGPFYSPR----DPEPPEPL 1946

Query: 509 TYRLAHVLG 535
T+R V+G
Sbjct: 1947 TFRAQGVVG 1955


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914195|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_B05.
(615 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******